Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq471061 98.7 3e-16 seq498792 82.4 2e-11 seq479375 80.6 8e-11 >seq471061 Length=546 Score = 98.7 bits (108), Expect = 3e-16 Identities = 143/201 (71%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 39082 AAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCT-CGAAGAT 39140 ||||| || || | ||||||||||| |||||||||||||| | || |||| | || | Sbjct 60 AAGTCAATATCGAAATCGGGCATGGACACACGCTCAGGGTTTAAAAAGCGCTACAAATAA 119 Query 39141 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39200 | ||| | | || ||||| |||||||| || ||| | || || | || ||||| Sbjct 120 TAAGTCGTAATGAATAGGGTCGAGGTCGGTAATATTGAGCGAATAAGCAACGAGTGAGCC 179 Query 39201 AGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAA 39260 || |||| || || ||||| ||||| ||||| || | || ||||| | ||| || Sbjct 180 TGCACCAGAACCACGACCAGGACCGACTGGTACGCCATTGGCTTTTGCCCAACGGATAAA 239 Query 39261 GTCGGCGACGACGAGGAAGTA 39281 ||| ||||| ||||||||| Sbjct 240 GTCCATGACGATGAGGAAGTA 260 >seq498792 Length=554 Score = 82.4 bits (90), Expect = 2e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 39101 GCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGT 39160 |||| || || || || ||||| ||||| |||||||| | || ||| | |||| Sbjct 1 GCATCGATACCCGTTCCGGGTTAAGGAATCGCTCGAACAGCAGGTCGTATTCCAGAGGGT 60 Query 39161 CCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAG 39220 | ||||| || ||| | | || || ||||||| || || | || || || |||| Sbjct 61 CAAGGTCAGTAATCTTTTGCACATAGGCCACCAGCGACCCGGCACCCGAACCACGGCCAG 120 Query 39221 GGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGT 39280 | || || |||||||| ||| ||||| ||| ||||| |||| ||||||| Sbjct 121 GACCTACTGGTACGCCGTTACTCTTGGCCCACTGGATAAAGTCCATCACGATCAGGAAGT 180 Query 39281 ACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCG 39318 | |||||||||||||||| | || || || | |||| Sbjct 181 AACCCGGGAACCCCATCTGGATAATGATATCCAGCTCG 218 >seq479375 Length=664 Score = 80.6 bits (88), Expect = 8e-11 Identities = 152/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 39082 AAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATG 39141 ||||||| ||| | ||||||||||| ||||| |||||||||| ||| || ||||| | Sbjct 94 AAGTCGACGTCGAAATCGGGCATGGATACACGTTCAGGGTTCAAGAAACGTTCGAACAGT 153 Query 39142 AGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCA 39201 | ||| | || || | |||||| || || ||||| ||| | | ||| || Sbjct 154 AAATCGTATTCTAGTGGATCTAAGTCGGTAATTTTAAGCGCGTATGCGACTAACGATCCC 213 Query 39202 GCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAG 39261 || |||| || || || || || || | |||||| || || |||| || || Sbjct 214 GCACCAGAACCACGGCCGGGACCAACTGGAATGCCGTTGTCTTTGCCCCACTGAATAAAC 273 Query 39262 TCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGAT 39305 || |||| |||||||| ||||| ||||||||||| || Sbjct 274 TCCATCACGATAAGGAAGTAACCGGGGAAACCCATCTGGTTAAT 317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158718523447764