Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_028895.1 Length=116138 Score E Sequences producing significant alignments: (Bits) Value seq426744 201 8e-47 seq417094 176 3e-39 seq427934 129 4e-25 seq399133 116 3e-21 seq517141 113 3e-20 seq435060 113 3e-20 seq519962 107 1e-18 seq484804 102 6e-17 seq75992 91.5 1e-13 seq521152 87.8 1e-12 seq466100 86.0 5e-12 seq516866 84.2 2e-11 seq520451 82.4 6e-11 >seq426744 Length=341 Score = 201 bits (222), Expect = 8e-47 Identities = 206/266 (77%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 100086 CGTTGTAGGTTAACACGTTGAGTAACGTAGTACGCATCACGTTGCTCGGAAGCACGGCGC 100145 ||||||||||||| ||||||||| |||||||| ||||||||||||| ||| | ||| Sbjct 79 CGTTGTAGGTTAAGACGTTGAGTTACGTAGTATGCATCACGTTGCTTACCAGCTTGACGC 138 Query 100146 TCATACTCAACTGTTACTGTACGTTGACGCGGTACAACGAACTCATTGCGGTACACAATA 100205 ||| || ||||| | ||||||||||| || |||||||| | | ||||| || ||| Sbjct 139 TCACGTTCTACTGTAATAGTACGTTGACGAGGAACAACGAAGTTCTCACGGTAAACGATA 198 Query 100206 GCACAGAATGGTACGTTAACTGCTTTAGCTGGGAAGTAGCTAGAAACTACTACAGGCAGA 100265 | ||||||| | | || |||||||||||||||||| ||||||||| || | ||| Sbjct 199 GTACAGAATTCTGAACTGACAGCTTTAGCTGGGAAGTAGTTAGAAACTAGAACTGCTAGA 258 Query 100266 CCGTAGATACGACCAACTTGTCCTTGTAGTTTGA--TAGCT-GCTGCAGCAGTTACTTGA 100322 |||||||||||||||||||||||||| ||||| | || | | ||| || ||||| Sbjct 259 CCGTAGATACGACCAACTTGTCCTTGAAGTTTTAACGAGTTATCCGCACCA---ACTTGG 315 Query 100323 GTAACGTCTTGCCACTCATCATCTTC 100348 |||| || ||||| || |||||||| Sbjct 316 TTAACATCCTGCCATTCTTCATCTTC 341 >seq417094 Length=394 Score = 176 bits (194), Expect = 3e-39 Identities = 217/295 (74%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 48186 GGTTGAATGTAACAGTTGCCTGGCAGTGGCTCAATACCTTGAGATACTCCGCCACATAGC 48245 |||||| | |||| ||| || | || ||||| |||||| ||| | ||| | | Sbjct 14 GGTTGATTATAACTGTTAGCTACAATAGGTTCAATGCCTTGACTAACTGCTTGACAAATC 73 Query 48246 AAGGAACTG--CTAGTATTAGGTGCTATAGCTAGTCTATGGGTGTTCCTTACGCCATAAC 48303 || | ||| ||||||||||| || | |||||| ||| || || | |||||||||| Sbjct 74 AATG--CTGAACTAGTATTAGGAGCAAGTGCTAGTAAATGTGTATTACGAACGCCATAAC 131 Query 48304 CCTTACACCACTCAGGCTCACCTAGCTCCTTGGCCATCCACTCTGACGCCCTCAAAGACT 48363 |||||||||| || ||||| || ||| || |||||||||| |||||| | || | || Sbjct 132 CCTTACACCATTCTGGCTCGCCCCACTCTTTAGCCATCCACTGTGACGCACGTAATGCCT 191 Query 48364 CCTTATTCAGGTGCTCGAAGATTTCTAGGTTCTTCATATGTGCTTCGAAAGACTCGAAAG 48423 | | || | || || ||||||||||| |||||||||||| |||||||| || || || | Sbjct 192 CACTTTTGATGTTCTTGAAGATTTCTAAGTTCTTCATATGAGCTTCGAATGATTCAAACG 251 Query 48424 CAATCATATTATCTTGTAGATAAGTATGGTATCCTAGAAGCCCTAGACCCAGTGC 48478 |||||||||| | |||| || |||||| |||| ||| || ||||| | ||| Sbjct 252 CAATCATATTTTGCTGTAAGTATGTATGGAATCCAAGAGCACCAAGACCTAATGC 306 >seq427934 Length=2050 Score = 129 bits (142), Expect = 4e-25 Identities = 194/276 (70%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 36826 TTGGTCTTCATAAATGTGCGCATTTACTATCTTATGAAACGCTCTGCCAGGTTCTAGTCC 36885 ||||||||| ||||| || ||||| ||||||||||| | || | ||||||| | || Sbjct 1365 TTGGTCTTCGTAAATATGAGCATTGACTATCTTATGGTATGCCTTACCAGGTTTATGGCC 1306 Query 36886 AGTTATTTGAGCAACTATAGCTAGGAATGCGTACACTTGTACCATGTTGAAGTTAAGTCC 36945 ||| || || || | || || || ||| | || |||||||||||||||||||| | || Sbjct 1305 AGTAATCTGGGCCATTAACGCAAGTAATACATATACTTGTACCATGTTGAAGTTTAACCC 1246 Query 36946 TAACGGTACGTCACAAGAGCGCTGAGTAGCGTTAAGGTACAGTTTACTATTTAGTATAGA 37005 || ||| || |||||| |||||| || ||| ||||||| || | |||| || Sbjct 1245 TAGCGGAACATCACAACTGCGCTGTGTGCTGTTGAGGTACAAAGTATCACCGAGTAATGA 1186 Query 37006 GAACTGGAAGTTGTACATACAAGGGCGTAGGCAGCCCTGGTCGAACTCGCCTGGATTCCA 37065 || ||| | ||||||||| || || | ||| || ||| || | || |||| | Sbjct 1185 AAAATGGTGTTCGTACATACATGGTCGCAAGCAACCTAAGTCAAATGCTCCAGGATGAAA 1126 Query 37066 GTAGCTTAGAATTTCGCCACGGTCGTCAATCCCCTT 37101 | || ||| ||| || || |||| || || || || Sbjct 1125 GAAGGTTAAAATCTCACCGCGGTTATCTATACCATT 1090 >seq399133 Length=2727 Score = 116 bits (128), Expect = 3e-21 Identities = 247/364 (68%), Gaps = 16/364 (4%) Strand=Plus/Minus Query 102324 CCTCCCTCTTGACCTGATACACCCGTATTAGAACCCGCAATATTTTGAGGTATCCTAATT 102383 ||||||||||| || | ||| || ||| ||||| ||||||||| || || | ||| Sbjct 2710 CCTCCCTCTTGTCCGGTTACTCCAGTAGCTGAACCTGCAATATTTGCTGGGATACGAATC 2651 Query 102384 TTATCCATTTCAGGGTCGTTAAGTGGCTCATACCTAAGCTCAATCCTACCCTCGTTACCG 102443 |||||||| || ||||| | | | || |||| || || || || ||| Sbjct 2650 TTATCCATATCGGGGTCTTGCATTTTATCTAGTCTAATAGCAGCTCTTCCTTCATTAGGA 2591 Query 102444 GTGATTATTCCATTATTTACTTTGGAACTAA------CGGCTTTAGCTTTCGCCTCTTCA 102497 |||||||| |||||||| ||| | ||| | |||||| |||||| | Sbjct 2590 GTGATTATACCATTATTAACTAGTGCACTGATTCTATCGGCTTCTGCTTTC------TGG 2537 Query 102498 TCTGGGGCTAGGGCTGCTATATCATCAGTCATTAACTTTA-TATCGTAAGCGAAGAACAA 102556 ||||| || ||| | | | || |||| |||| || | ||||| | ||||| || | Sbjct 2536 TCTGGTTTTAAGGCAGGGACTTTATGAGTC-TTAAGTTCAATATCGAATGCGAAAAATAC 2478 Query 102557 CTCAAACACAGACTCGAA-TTTCTTCATCATTGGAAGTATAGTCATGTAGAAGAGCAGGT 102615 | || ||| |||||| |||||| | |||||||| ||| | |||||| | | | Sbjct 2477 TACGAAAACACTCTCGAACTTTCTT-AGCATTGGAATTATTTGTAAGTAGAATAATAACT 2419 Query 102616 CAATGTTAGGCCTAATGTTAGCGTTATTACCAGAGTCTAGTAGTAGGGGAGGAACTCCCA 102675 | | ||| ||| ||||||| |||||||||||||| | ||||| || ||||| ||||| | Sbjct 2418 CTAAGTTTGGCTTAATGTTGGCGTTATTACCAGAATTTAGTAATATAGGAGGGACTCCTA 2359 Query 102676 GAGC 102679 ||| Sbjct 2358 TAGC 2355 >seq517141 Length=371 Score = 113 bits (124), Expect = 3e-20 Identities = 125/164 (76%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 50154 GTAGAATGGTGCGTGGATGTTTATTTCAGCAAACGAAAATGA-GTTGCCCATCTGACGGA 50212 ||||||||||| ||| ||||| || |||| | | ||| | | |||| || | | Sbjct 337 GTAGAATGGTGAGTGTATGTTAATCTCAGTATTTGCAAAGGCTGCTGCC-ATACGTGCAA 279 Query 50213 AGTCATGCCTAGGGAACATTCTCTTGAAACGACCGCCCCAATACTCGTTACCTGCAACTA 50272 |||| | ||||||||||| | ||| || ||||| ||||||||||| ||||| || ||| Sbjct 278 AGTCTGGTCTAGGGAACATACGCTTAAATCGACCACCCCAATACTCATTACCAGCTACTT 219 Query 50273 GCTCATATAATGTGAATAGTTTTAAGGTTGTGATTACCCCATGA 50316 ||||||||| |||||||| |||||| | || ||||| |||||| Sbjct 218 GCTCATATAGTGTGAATAACTTTAAGTTAGTTATTACACCATGA 175 >seq435060 Length=507 Score = 113 bits (124), Expect = 3e-20 Identities = 286/434 (66%), Gaps = 21/434 (5%) Strand=Plus/Plus Query 69688 GACTTCCACTCAACTATCGCACACATGGTATTTAACCTGCCATGTACACCTAACGAGGTT 69747 ||||||||| | || || |||||||| |||||||| || |||| ||| | || ||| Sbjct 53 GACTTCCACAGTAACATAGCTCACATGGTGTTTAACCTACCTTGTAAGCCTGAGGAAGTT 112 Query 69748 AAAAAGAAGTTCCCGGCTATGCGTCAGGCTGCAAAGGCGATTACGTTCGGAATCCTGTAC 69807 || || ||||| || | | |||||||| |||||||| || || || || || | | Sbjct 113 AAGAAACTATTCCCAGCCCTAAGGCAGGCTGCGAAGGCGATAACATTTGGTATTCTATTC 172 Query 69808 GGGTCAGGGCCAGCTAAGGTTGCTGAGTCTGTTAACATCGCGCTACTAGAACAAAGTATC 69867 || ||||| |||| || || ||| |||||| | || |||||| | Sbjct 173 GGTTCAGGAGCAGCATCTGTAGCAGAGCAAGTTAACTTAGCTAAGCTAGAATTA------ 226 Query 69868 GCGACTGGTCAACCCTTTGAACCTTGTTCAATCGAAGATGCAAAAGACCACATCAACACA 69927 ||| || | ||| |||| | | ||| || || ||||| | Sbjct 227 ------GGTGAAGCAGCTGA---TTGTACTAAAGAAATCGCCGCAGGTTACATCGAAGTG 277 Query 69928 TACTTCCGTAAGTTCCC-ACAATTACGTAAG--TGGATTGATGCTTCGCATGACCAGATT 69984 |||||| |||||| | | ||| ||| ||||||||| ||| ||||| | || Sbjct 278 TACTTCAAGCGGTTCCCTAGACTTA---AAGCGTGGATTGATTCTTGTCATGATGAAATC 334 Query 69985 CGTCAGTACGGATTCATCTATAGCTTCTATGGTCGTAAACGTAGACTGCGTAACTACAAG 70044 |||||| | ||||| || || | | || || ||||| |||||| | | ||| | Sbjct 335 CGTCAGAAAGGATTTATATACAACCACTTCGGCCGTAAGCGTAGATTACACAACATCTCT 394 Query 70045 TCTACTGATAGGGCAGTCGTAGGTGCAGAGATTCGCTCAGGATTTAACGCTATAATCCAA 70104 |||| ||||| | || ||||||| ||| || || ||||||||||| ||||| || || Sbjct 395 TCTAGCGATAGAGGCGTTGTAGGTGGAGAAATCCGTTCAGGATTTAATGCTATCATACAG 454 Query 70105 TCTGCGTCTTCTGA 70118 |||||||| ||||| Sbjct 455 TCTGCGTCATCTGA 468 >seq519962 Length=460 Score = 107 bits (118), Expect = 1e-18 Identities = 121/161 (75%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 69469 ACTACTTCTGGACGACTAAGCTCTTCCGGTACATTTAACGCGCAACAATTACCTCGTGAT 69528 |||||||| || ||| | || ||||||||| || ||| ||| || | || |||||| Sbjct 161 ACTACTTCAGGTCGATTGAGTAGTTCCGGTACGTTCAACATGCAGCAGCTGCCACGTGAT 102 Query 69529 AA-CCCAATTATCAAGGGATGTATTGTGGCTCCACCAGGCTACAAAGTAGTGGCAAAAGA 69587 || |||||| ||||| || ||| || ||||||| |||||||| || |||| || || Sbjct 101 AACCCCAATCATCAAAGGTTGTGTTATGGCTCCTCCAGGCTATAAGATAGTAGCTGCCGA 42 Query 69588 CTTAACAACAGCTGAGGTATACTACGCAGCGGCACTGTCAG 69628 |||||||| ||||| || |||| ||| |||| | | |||| Sbjct 41 TTTAACAACCGCTGAAGTTTACTTCGCTGCGGTATTATCAG 1 >seq484804 Length=980 Score = 102 bits (112), Expect = 6e-17 Identities = 193/281 (69%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 37181 CCCTGTACCCCGTAAACACGCCCCATGTCGTCTTCACCGCGCCTGTGAGGGTTTTTCAAC 37240 || || | ||||||||| |||||||| || |||||||| | |||| ||| || | | Sbjct 103 CCTTGAATCCCGTAAACGCGCCCCATATCATCTTCACCTTTGCGGTGAATGTTATTAAGC 162 Query 37241 CAAGCCTCATTGATGTTCGCGTTAGCATCCCAGGTCTTCGTACCTAGGTTTCTGAAGTCT 37300 ||||| ||||| | || || |||||||||||||| || |||||||| || | || || Sbjct 163 CAAGCATCATTTAAATTGGCATTAGCATCCCAGGTTTTAGTACCTAGTTTACGAAAATCA 222 Query 37301 TCTGCGTTAGAATAGCCTCTAATGTACCCTAGCAGCTCTGCTACTGCGGACTTCCAGAAA 37360 | || || ||| || | || || || | | ||| || | || ||||| | ||| Sbjct 223 GCGGCATTGTCATAACCACGGATATAACCAATAAACTCAGCAATCGCTGACTT-GAAAAA 281 Query 37361 GATTTT---CTAAGGCTAAGCAAGGGGAACTCGCCCGCCCCTACATTATACTCTAGGTCA 37417 | | || | || | | || || |||||| || || ||||| || | || ||| Sbjct 282 GCTCTTACGCGTAG--TTATTAATGGAAACTCGTTAGCACCAACATTGTATTGTAAATCA 339 Query 37418 TAGTTAATTACTGTTAGACAGCGCTTACCTGTGCGTTCGTT 37458 ||||| || |||| ||| || ||||| || |||||||| Sbjct 340 GCATTAATGACGGTTAAACAACGTTTACCGGTACGTTCGTT 380 >seq75992 Length=1236 Score = 91.5 bits (100), Expect = 1e-13 Identities = 99/130 (76%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 68723 AAGAAAATAGAT-TGCACGACACGATGGTAATGCACTACGTTCTTGATGAAAGACAAGGT 68781 || ||| |||| | |||||||| | || ||||| ||| |||| || |||||||||||| Sbjct 134 AATAAAGTAGAAGTACACGACACTTTAGTTATGCATTACATTCTAGACGAAAGACAAGGT 75 Query 68782 ACACACGGTCTGAAGTCCCTAGCCATGAAACACACCGACATGGGCGACTATGACTTCGAG 68841 || |||||||| ||||| ||||| || || | || ||| | || || || ||| ||| Sbjct 74 ACGCACGGTCTTAAGTCTCTAGCAATTAAGTATACAGACCTAGGGGATTACGACCGAGAG 15 Query 68842 CTAGACGAGT 68851 ||||||||| Sbjct 14 TTAGACGAGT 5 >seq521152 Length=754 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 49077 GGGCGAATATCTCCTAGGTACGCGGAAGTACCAAACCCATTCTTAGTCAGCATAGCTGTC 49136 || ||||| || |||| ||| | |||||||| |||||||| || |||||||| || Sbjct 736 GGACGAATGTCACCTAAGTAACCACTTGTACCAAAGCCATTCTTTGTAAGCATAGCAGTA 677 Query 49137 TCGTGCAGGGTAGAATAGAATCCGTCAATGGAGTCGTCAATGTACCCACCTGAGCAACTT 49196 || || | || |||||| || | || || ||||||||| | || || ||||| Sbjct 676 TCATGTCTAGCAGTATAGAAACCATGGATACTATCATCAATGTACGCGCCAGAACAACTA 617 Query 49197 ACAGGGAGTCCTTTATCTGTCCCCATATTTGCCATTACGGGTGTAGATGCCGCTAACCAA 49256 || || | ||||| | ||| ||||| |||| | || || ||| ||||||||| Sbjct 616 ACTGGCATACCTTTGTTTGTACCCATGTTTGATAACACTGGAGTACTACAAGCTAACCAA 557 Query 49257 CCTTTCCAGAAAAGTTCAAAGAA 49279 || ||||| | | |||||||| Sbjct 556 CCATTCCACATTACATCAAAGAA 534 >seq466100 Length=556 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 100797 TCTGGCTCGATTTGCATTGTGATTTTCTTGCTAGTCATTGGCAGTTCTTGGAACATTGAA 100856 |||||||| || ||| || | |||| ||||||||||| || |||| ||| | | Sbjct 6 TCTGGCTCAATCATCATAGTAAGAATCTTACTAGTCATTGGAAGCTCTTCGAATAAGTTA 65 Query 100857 CCAACTACTAGAAGCTTTTGAATATCCCGTAGAATGCGGTTAGAGAACACAGTCTCGTAC 100916 || || || | | ||| || ||||| ||||| || || | |||||| | ||||||||| Sbjct 66 CCTACAACCATTAACTTCTGCATATCACGTAGGATACGTTGAGAGAAAATAGTCTCGTAG 125 Query 100917 TCTTCACTAGAAACAGTGATTGAAGAGCTAGAGTTAACTGCTTTTTGTAGGTTTTCACCG 100976 | ||||||||||| ||| || || | ||| || ||||| | | |||||| Sbjct 126 TTCTCACTAGAAACTTCGATACTTGAACTTGCGTTCACAGCTTTAAGGTGAGCTTCACCA 185 Query 100977 AAAGTGGTTTCGAAAACGCCTTTCTTAGTGATAAA 101011 | ||||||| || | ||||| | ||| || || Sbjct 186 TATTTGGTTTCAAACATTCCTTTTTCAGTAATGAA 220 >seq516866 Length=361 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/216 (69%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 16373 AGTAGCTTTGACAGCAGTACCGTGAGTATCACGAGTGACATACTGGTAAGTAAAGCTACC 16432 ||||||||| || || | ||| || |||||||| |||||||||||||| || | ||| Sbjct 147 AGTAGCTTTAACTGCTGAACCATGGGTATCACGGGTGACATACTGGTAGCTATAAGAACC 206 Query 16433 AATACCCAATACTACAGCAGGTACAAAGCGTTTCGCTAACAAGCGGCTG-ATGATCTTGT 16491 ||| || || || || || |||||| ||| | | || | |||| | |||| Sbjct 207 AATTCCTAAAACCACTTTAGACGCAAAGCCTTTATCCATTAAAC-GCTGTAATATCTGAC 265 Query 16492 CTTGGCGCTCTAGAGTAATAGAGTCGCCATAGATTGCCCCAACGTGAGAATCTAGACGTT 16551 ||||||| ||||||||| | |||||||| || || ||||| || ||| || | Sbjct 266 GTTGGCGCGGTAGAGTAATTGCATCGCCATAAATGGCACCAACATGCTCATCAAGTAACT 325 Query 16552 TCAATCCGTTCTCGATTGTA---CCACCAAAAGTAT 16584 | || || || || | ||| ||||||||| ||| Sbjct 326 TAAAACCTTTGTCTGTAGTAGTGCCACCAAAAATAT 361 >seq520451 Length=342 Score = 82.4 bits (90), Expect = 6e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 48599 TTTCCACTCGTCGTACTTAGCCCCATTCATAGAGCTTAGTACACAGGTAAATGTGTGCAT 48658 |||||| || ||||||||||| |||||||| || | |||||| ||||| || || Sbjct 342 TTTCCATTCATCGTACTTAGCTAAGTTCATAGAACTCAATACACATGTAAACGTATGGTC 283 Query 48659 GTGATCGGAGAATAGGTTAATTTCAGTACATAGGTTAGAGCCTTTTACAGTAAGACCCCT 48718 | ||| || | ||| ||||| |||||| |||||| ||||||| | | ||| | Sbjct 282 GATATCACTAAACAAGTTGATTTCGATACATAAGTTAGACGCTTTTACTTTCAAGCCCAT 223 Query 48719 GTCTTTGTACATT 48731 ||||||||||||| Sbjct 222 GTCTTTGTACATT 210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369137399988778