Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_028927.1 Length=167298 Score E Sequences producing significant alignments: (Bits) Value seq449735 199 4e-46 seq506238 138 1e-27 seq509673 109 6e-19 seq487923 109 6e-19 seq351952 102 9e-17 seq326422 89.7 5e-13 seq510909 84.2 2e-11 >seq449735 Length=3187 Score = 199 bits (220), Expect = 4e-46 Identities = 405/593 (68%), Gaps = 15/593 (3%) Strand=Plus/Minus Query 43382 AATAGTTCACGGGCTTTAATACGCTTTTTGCGAAT--ATTAGGGTCTTTTTCTGCTGCTT 43439 || |||||| |||||||| || ||||| ||||| ||| | |||| ||| | | Sbjct 611 AACAGTTCAATAGCTTTAATGCGTTTTTTACGAATTGATTCG--TCTTGTTCGTATTTTA 554 Query 43440 CGTATAATTCACGG-AAACG-GTCTTGGTCTTTAAAATAAGAATAATAAAGCTCGCCACC 43497 | |||| | || |||| ||||||||||| |||| | | || ||||| ||| Sbjct 553 C--ATAAAGCGCGTCAAACTCGTCTTGGTCTTCAAAAAATGCATCGTAAAG---GCCTGG 499 Query 43498 CATTTCATGCGGACTGAACAAAGTAATGTAGTCGTTCTTTCCAAAACGTTCCATCATTAG 43557 || ||| || || ||||| ||||||||||||| || ||||| |||||| Sbjct 498 CACATCAGAGGGGCTAAACAAGGTAATGTAGTCGTCTTTAATTAAACGCGAGTACATTAG 439 Query 43558 ATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACCTTTGTT 43617 | ||| | || || || ||||| | |||||| | |||||| || || || || ||| Sbjct 438 TTTATTAAACTGTACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTT 379 Query 43618 ATTTTTCAAAACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATA--ATAAGCAGTA 43675 |||||| | || | || ||||| ||||| |||||||||| || || | ||| || Sbjct 378 ATTTTTAAGTACTAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAG--GTT 321 Query 43676 GCAGCGCCGCCACGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTC 43735 || ||||||||||| | || ||||| || || |||||| || || ||||| || || Sbjct 320 GCTGCGCCGCCACGTACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTA 261 Query 43736 CAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCGGCA 43795 ||||||||||| ||| |||||| |||| || ||| ||| | ||| ||| Sbjct 260 TAAAAAGGAATACAACCCGTATGGTACGCTTCGCCATTGCGAATGTGGCTACCCAGTGCA 201 Query 43796 CGAATCATACCAACGTTAATACCAATTCCAGCACGTTTGGAGATATATTCAACAATTGAA 43855 ||||| ||| ||||||| ||||| || ||||||| || | |||| |||||||| | Sbjct 200 CGAATGCGACCTGCGTTAATGCCAATGCCGGCACGTTGCGATACGTATTTAACAATTGCA 141 Query 43856 GCGGAAGCCTTATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACACATGAACTA 43915 | || | || || || | | || || ||| || | ||||| || ||| Sbjct 140 GACGAGGTGGCGTTAATTGAATCAAGGCTGTCGCCACACTCTATTAATACACACGAGCTA 81 Query 43916 AACTGTCGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAAT 43968 ||||| || || || |||||| ||| |||||||| || || |||| |||||| Sbjct 80 AACTGGCGTGTTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAGTGAAAT 28 >seq506238 Length=275 Score = 138 bits (152), Expect = 1e-27 Identities = 141/184 (77%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 131499 ATTATAAGCTCTCAGTAAAGGTACGAGCAATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 131558 |||| || | || ||||| ||||| | | ||||| |||| ||||| || || | | Sbjct 38 ATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATG 97 Query 131559 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 131618 ||||||| || ||||| ||||| |||||||| || || | || ||||||||||| || | Sbjct 98 AGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGT 157 Query 131619 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 131678 | ||||| |||||||||| ||||||||||| | || || ||||| | |||||||||| Sbjct 158 GTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCAC 217 Query 131679 CTTC 131682 |||| Sbjct 218 CTTC 221 >seq509673 Length=441 Score = 109 bits (120), Expect = 6e-19 Identities = 142/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 43568 TGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACCTTTGTTATTTTTCA-A 43626 || || || |||||||||||||| | ||||| ||||| || || ||||||||||| Sbjct 228 TGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATTTTTCAGT 287 Query 43627 AACAAGAA-GATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGC 43685 | ||| || || |||||||| |||||||| | || ||| | || || || |||| Sbjct 288 ACCAATAATGA--CTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGCACCGC 345 Query 43686 CACGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAA 43745 |||| | || ||||||||||| ||||||||||||| || || |||| | || || | Sbjct 346 CACGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAATGGGA 405 Query 43746 TAACACCAGTATG 43758 || ||| ||||| Sbjct 406 TACAACCCGTATG 418 >seq487923 Length=1072 Score = 109 bits (120), Expect = 6e-19 Identities = 290/429 (68%), Gaps = 23/429 (5%) Strand=Plus/Minus Query 95159 ATACTAATTTATCTAATACGTATTTTTGCCATGCATAATCATTACGGAATCCGAAGACCA 95218 ||| |||||||| |||| || || |||||||| ||||||||| |||||||| || Sbjct 528 ATAGTAATTTAT---ATACATACTTATGCCATGCTAAATCATTACCAAATCCGAATACTG 472 Query 95219 CGTCATTTGAGCGCATGCTT-ACTAC-TGCATTGACTTTCTTATCACGAATCAGGTATTG 95276 ||||| ||||||| || || || | | ||| | ||| ||||||||||| | ||| Sbjct 471 CGTCACATGAGCGC-TGATTGACAATATAGATTAA-TTTATTATCACGAATAAATACTTG 414 Query 95277 TACTGTATTAGTACACATGAAATCTGACATGCCATCTTTATTGTAGTCAAATTGCATGGA 95336 || |||||||||| || ||||||||||| ||| |||| | ||| ||| || || Sbjct 413 AACATTATTAGTACAAATAAAATCTGACATTTCATTAGTATTCCATTCACTTTGAATAGA 354 Query 95337 TGGACGAGTATAAATCATGATACCACGTCGAGAATCAGGGTTTTGACCAAGTTCAGCT-A 95395 || | |||||||||||| || | || | || | || | | || ||| | Sbjct 353 AGGTCTAGTATAAATCATAATTGCTTTACGTGTATTTTTATCTTTAAGTAATT--GCTCA 296 Query 95396 AACACATA-TCATACTGGGCATAGTTATCTTCTG-AC--CAAATAGCCCAACCATAATTT 95451 | || | |||| || ||| |||| | | || ||||| ||||||||||||| Sbjct 295 CGCGCAGACGCATATTG---ATAATTATTAGCAGCACTAAAAATACACCAACCATAATTT 239 Query 95452 GAGTTAATTTCACCTTTAGAAGATGCTACCTGCTGCCAAATCTTTGG---TGTTTCACCT 95508 |||||||||| ||||| | || ||| | | |||||||||||| | | |||| Sbjct 238 GAGTTAATTTTACCTTCTGTGCTTGATACATCTTCCCAAATCTTTGGAATAGGTGCACC- 180 Query 95509 GGAATATCTTTAACAAACAAGCTTTTAGATTTATACCATTCAAGTTCACGCTGAATGTAT 95568 |||||||| ||||| | || ||| ||||||| | ||| | |||| ||| Sbjct 179 --CATATCTTTTACAAATAGTGATTGAGAACGATACCATAATAATTCTTTCCGAATATAT 122 Query 95569 TCATCATTA 95577 || | |||| Sbjct 121 TCTTTATTA 113 >seq351952 Length=416 Score = 102 bits (112), Expect = 9e-17 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 131500 TTATAAGCTCTCAGTAAAGGTACGAGCAATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 131559 ||||| || | ||||||||||| | || || || ||| ||||| | ||| | || Sbjct 21 TTATAGCGTCGCTGTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGA 80 Query 131560 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 131619 |||||| || ||||| ||||| |||||||| || || | || ||||| || || |||| Sbjct 81 GTTAAATCGTACTGCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATT 140 Query 131620 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 131679 | | |||||| | ||||||| || || |||||||| | |||||||||||| Sbjct 141 TTCCATTGCATCCAATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACC 200 Query 131680 TTCAAT 131685 |||||| Sbjct 201 TTCAAT 206 >seq326422 Length=2068 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/115 (79%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 140713 GCGCTCTACCAAACTGAGCTACAC--GGAGTAAATTAAATTGGAGCGGATAATGAGAATC 140770 |||||||||||| |||||||| | | | | |||| |||||||| | | ||||| Sbjct 291 GCGCTCTACCAA-CTGAGCTATATCAGCATCACCATAAACTGGAGCGGGCAGCGGGAATC 349 Query 140771 GAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGC 140824 |||| | ||||||||| ||||||| ||||||||||| |||||||||||| |||| Sbjct 350 GAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 404 >seq510909 Length=431 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 131512 AGTAAAGGTACGAGCAATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 131571 |||||| ||||||| ||| ||||| ||||||| || ||||| || | ||||||||||| Sbjct 350 AGTAAATGTACGAGTAATCACGTCTTGCTGCTGCTCAGGAGTGAGCGCATTAAAGCGAAC 409 Query 131572 TGCATAACCGGATACACGGAT 131592 |||||||| |||||||| || Sbjct 410 GGCATAACCCGATACACGAAT 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531709823459360