Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_028927.1
Length=167298
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 199 4e-46
seq506238 138 1e-27
seq509673 109 6e-19
seq487923 109 6e-19
seq351952 102 9e-17
seq326422 89.7 5e-13
seq510909 84.2 2e-11
>seq449735
Length=3187
Score = 199 bits (220), Expect = 4e-46
Identities = 405/593 (68%), Gaps = 15/593 (3%)
Strand=Plus/Minus
Query 43382 AATAGTTCACGGGCTTTAATACGCTTTTTGCGAAT--ATTAGGGTCTTTTTCTGCTGCTT 43439
|| |||||| |||||||| || ||||| ||||| ||| | |||| ||| | |
Sbjct 611 AACAGTTCAATAGCTTTAATGCGTTTTTTACGAATTGATTCG--TCTTGTTCGTATTTTA 554
Query 43440 CGTATAATTCACGG-AAACG-GTCTTGGTCTTTAAAATAAGAATAATAAAGCTCGCCACC 43497
| |||| | || |||| ||||||||||| |||| | | || ||||| |||
Sbjct 553 C--ATAAAGCGCGTCAAACTCGTCTTGGTCTTCAAAAAATGCATCGTAAAG---GCCTGG 499
Query 43498 CATTTCATGCGGACTGAACAAAGTAATGTAGTCGTTCTTTCCAAAACGTTCCATCATTAG 43557
|| ||| || || ||||| ||||||||||||| || ||||| ||||||
Sbjct 498 CACATCAGAGGGGCTAAACAAGGTAATGTAGTCGTCTTTAATTAAACGCGAGTACATTAG 439
Query 43558 ATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACCTTTGTT 43617
| ||| | || || || ||||| | |||||| | |||||| || || || || |||
Sbjct 438 TTTATTAAACTGTACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTT 379
Query 43618 ATTTTTCAAAACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATA--ATAAGCAGTA 43675
|||||| | || | || ||||| ||||| |||||||||| || || | ||| ||
Sbjct 378 ATTTTTAAGTACTAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAG--GTT 321
Query 43676 GCAGCGCCGCCACGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTC 43735
|| ||||||||||| | || ||||| || || |||||| || || ||||| || ||
Sbjct 320 GCTGCGCCGCCACGTACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTA 261
Query 43736 CAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCGGCA 43795
||||||||||| ||| |||||| |||| || ||| ||| | ||| |||
Sbjct 260 TAAAAAGGAATACAACCCGTATGGTACGCTTCGCCATTGCGAATGTGGCTACCCAGTGCA 201
Query 43796 CGAATCATACCAACGTTAATACCAATTCCAGCACGTTTGGAGATATATTCAACAATTGAA 43855
||||| ||| ||||||| ||||| || ||||||| || | |||| |||||||| |
Sbjct 200 CGAATGCGACCTGCGTTAATGCCAATGCCGGCACGTTGCGATACGTATTTAACAATTGCA 141
Query 43856 GCGGAAGCCTTATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACACATGAACTA 43915
| || | || || || | | || || ||| || | ||||| || |||
Sbjct 140 GACGAGGTGGCGTTAATTGAATCAAGGCTGTCGCCACACTCTATTAATACACACGAGCTA 81
Query 43916 AACTGTCGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAAT 43968
||||| || || || |||||| ||| |||||||| || || |||| ||||||
Sbjct 80 AACTGGCGTGTTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAGTGAAAT 28
>seq506238
Length=275
Score = 138 bits (152), Expect = 1e-27
Identities = 141/184 (77%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 131499 ATTATAAGCTCTCAGTAAAGGTACGAGCAATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 131558
|||| || | || ||||| ||||| | | ||||| |||| ||||| || || | |
Sbjct 38 ATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATG 97
Query 131559 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 131618
||||||| || ||||| ||||| |||||||| || || | || ||||||||||| || |
Sbjct 98 AGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGT 157
Query 131619 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 131678
| ||||| |||||||||| ||||||||||| | || || ||||| | ||||||||||
Sbjct 158 GTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCAC 217
Query 131679 CTTC 131682
||||
Sbjct 218 CTTC 221
>seq509673
Length=441
Score = 109 bits (120), Expect = 6e-19
Identities = 142/193 (74%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 43568 TGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACCTTTGTTATTTTTCA-A 43626
|| || || |||||||||||||| | ||||| ||||| || || |||||||||||
Sbjct 228 TGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATTTTTCAGT 287
Query 43627 AACAAGAA-GATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGC 43685
| ||| || || |||||||| |||||||| | || ||| | || || || ||||
Sbjct 288 ACCAATAATGA--CTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGCACCGC 345
Query 43686 CACGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAA 43745
|||| | || ||||||||||| ||||||||||||| || || |||| | || || |
Sbjct 346 CACGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAATGGGA 405
Query 43746 TAACACCAGTATG 43758
|| ||| |||||
Sbjct 406 TACAACCCGTATG 418
>seq487923
Length=1072
Score = 109 bits (120), Expect = 6e-19
Identities = 290/429 (68%), Gaps = 23/429 (5%)
Strand=Plus/Minus
Query 95159 ATACTAATTTATCTAATACGTATTTTTGCCATGCATAATCATTACGGAATCCGAAGACCA 95218
||| |||||||| |||| || || |||||||| ||||||||| |||||||| ||
Sbjct 528 ATAGTAATTTAT---ATACATACTTATGCCATGCTAAATCATTACCAAATCCGAATACTG 472
Query 95219 CGTCATTTGAGCGCATGCTT-ACTAC-TGCATTGACTTTCTTATCACGAATCAGGTATTG 95276
||||| ||||||| || || || | | ||| | ||| ||||||||||| | |||
Sbjct 471 CGTCACATGAGCGC-TGATTGACAATATAGATTAA-TTTATTATCACGAATAAATACTTG 414
Query 95277 TACTGTATTAGTACACATGAAATCTGACATGCCATCTTTATTGTAGTCAAATTGCATGGA 95336
|| |||||||||| || ||||||||||| ||| |||| | ||| ||| || ||
Sbjct 413 AACATTATTAGTACAAATAAAATCTGACATTTCATTAGTATTCCATTCACTTTGAATAGA 354
Query 95337 TGGACGAGTATAAATCATGATACCACGTCGAGAATCAGGGTTTTGACCAAGTTCAGCT-A 95395
|| | |||||||||||| || | || | || | || | | || ||| |
Sbjct 353 AGGTCTAGTATAAATCATAATTGCTTTACGTGTATTTTTATCTTTAAGTAATT--GCTCA 296
Query 95396 AACACATA-TCATACTGGGCATAGTTATCTTCTG-AC--CAAATAGCCCAACCATAATTT 95451
| || | |||| || ||| |||| | | || ||||| |||||||||||||
Sbjct 295 CGCGCAGACGCATATTG---ATAATTATTAGCAGCACTAAAAATACACCAACCATAATTT 239
Query 95452 GAGTTAATTTCACCTTTAGAAGATGCTACCTGCTGCCAAATCTTTGG---TGTTTCACCT 95508
|||||||||| ||||| | || ||| | | |||||||||||| | | ||||
Sbjct 238 GAGTTAATTTTACCTTCTGTGCTTGATACATCTTCCCAAATCTTTGGAATAGGTGCACC- 180
Query 95509 GGAATATCTTTAACAAACAAGCTTTTAGATTTATACCATTCAAGTTCACGCTGAATGTAT 95568
|||||||| ||||| | || ||| ||||||| | ||| | |||| |||
Sbjct 179 --CATATCTTTTACAAATAGTGATTGAGAACGATACCATAATAATTCTTTCCGAATATAT 122
Query 95569 TCATCATTA 95577
|| | ||||
Sbjct 121 TCTTTATTA 113
>seq351952
Length=416
Score = 102 bits (112), Expect = 9e-17
Identities = 134/186 (72%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 131500 TTATAAGCTCTCAGTAAAGGTACGAGCAATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 131559
||||| || | ||||||||||| | || || || ||| ||||| | ||| | ||
Sbjct 21 TTATAGCGTCGCTGTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGA 80
Query 131560 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 131619
|||||| || ||||| ||||| |||||||| || || | || ||||| || || ||||
Sbjct 81 GTTAAATCGTACTGCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATT 140
Query 131620 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 131679
| | |||||| | ||||||| || || |||||||| | ||||||||||||
Sbjct 141 TTCCATTGCATCCAATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACC 200
Query 131680 TTCAAT 131685
||||||
Sbjct 201 TTCAAT 206
>seq326422
Length=2068
Score = 89.7 bits (98), Expect = 5e-13
Identities = 91/115 (79%), Gaps = 4/115 (3%)
Strand=Plus/Plus
Query 140713 GCGCTCTACCAAACTGAGCTACAC--GGAGTAAATTAAATTGGAGCGGATAATGAGAATC 140770
|||||||||||| |||||||| | | | | |||| |||||||| | | |||||
Sbjct 291 GCGCTCTACCAA-CTGAGCTATATCAGCATCACCATAAACTGGAGCGGGCAGCGGGAATC 349
Query 140771 GAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGC 140824
|||| | ||||||||| ||||||| ||||||||||| |||||||||||| ||||
Sbjct 350 GAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 404
>seq510909
Length=431
Score = 84.2 bits (92), Expect = 2e-11
Identities = 67/81 (83%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 131512 AGTAAAGGTACGAGCAATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 131571
|||||| ||||||| ||| ||||| ||||||| || ||||| || | |||||||||||
Sbjct 350 AGTAAATGTACGAGTAATCACGTCTTGCTGCTGCTCAGGAGTGAGCGCATTAAAGCGAAC 409
Query 131572 TGCATAACCGGATACACGGAT 131592
|||||||| |||||||| ||
Sbjct 410 GGCATAACCCGATACACGAAT 430
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531709823459360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |