Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_028940.1 Length=170286 Score E Sequences producing significant alignments: (Bits) Value seq449735 131 2e-25 >seq449735 Length=3187 Score = 131 bits (144), Expect = 2e-25 Identities = 321/480 (67%), Gaps = 19/480 (4%) Strand=Plus/Minus Query 145189 ACATCAG---GACTAAAAAGAGTAATGTAATCGTTTTTAATCAGACGTTCAATCATCAAA 145245 ||||||| | ||||| | |||||||| |||| |||||| | ||| ||| | Sbjct 497 ACATCAGAGGGGCTAAACAAGGTAATGTAGTCGTCTTTAATTAAACGCGAGTACATTAGT 438 Query 145246 TCATTGATTTGAATTCCATAATCAAGATGCCTGATTCGATTTTCTTCTACGCCTTTGTTG 145305 | ||| | || | || ||||| | ||| | | || || || || || || ||| Sbjct 437 TTATTAAACTGTACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTTA 378 Query 145306 TTTTTAAGGACTAAAAGATTTTCTGCTTCAAGGTGCCACATTGGGTAATATAATGTTGCC 145365 |||||||| ||||| || |||||| |||| | ||||| | ||||| | || ||||| Sbjct 377 TTTTTAAGTACTAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAGGTTGCT 318 Query 145366 GCACCACCACGAATTCCACCTTGAGAACAACTTTTAACAGAAGCC---AAGTGAGTTTTC 145422 || || ||||| | || ||||| ||||| |||||||| | | ||||| | | Sbjct 317 GCGCCGCCACGTACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTAT-- 260 Query 145423 CAGAATGGAATAACACCCGTATGCCGCACTTCACCGTGACCAATCTTAGAACCTTCAGCG 145482 | || |||||| ||||||||| | |||| || | | ||| | ||| || Sbjct 259 -AAAAAGGAATACAACCCGTATGGTACGCTTCGCCATTGCGAATGTGGCTACCCAGTGCA 201 Query 145483 CGATACATTCCGGCGTTAACACCAATACCAGCGCGTTTACTGATA--TATTTGATAAT-G 145539 ||| || ||||||| ||||| || || |||| |||| ||||| | ||| | Sbjct 200 CGAATGCGACCTGCGTTAATGCCAATGCCGGCACGTTGC--GATACGTATTTAACAATTG 143 Query 145540 CTTTCGT--TCACTTTGTTAATTGAATTTAGCGAATCGCCACCTTCAATTACTACACATG 145597 | || | | ||||||||||| || ||||||| || |||| |||||| | Sbjct 142 CAGACGAGGTGGC---GTTAATTGAATCAAGGCTGTCGCCACACTCTATTAATACACACG 86 Query 145598 AACTGAATTGACGAGTTGGTGTACGTACACCTGCCATAATAGGAGTAGGCAAAGAAATTT 145657 | || || || || ||||| ||||| |||||||||||||| || ||||| | ||||||| Sbjct 85 AGCTAAACTGGCGTGTTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAGTGAAATTT 26 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541208615460320