Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq471061 93.3 1e-14 seq498792 82.4 2e-11 >seq471061 Length=546 Score = 93.3 bits (102), Expect = 1e-14 Identities = 142/201 (71%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 39515 AAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCT-CGAAGAT 39573 ||||| || || | ||||||||||| || ||||||||||| | || |||| | || | Sbjct 60 AAGTCAATATCGAAATCGGGCATGGACACACGCTCAGGGTTTAAAAAGCGCTACAAATAA 119 Query 39574 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39633 | ||| | | || ||||| |||||||| || ||| | || || | || ||||| Sbjct 120 TAAGTCGTAATGAATAGGGTCGAGGTCGGTAATATTGAGCGAATAAGCAACGAGTGAGCC 179 Query 39634 AGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAA 39693 || |||| ||||| ||||| ||||| || || || | || ||||| | ||| || Sbjct 180 TGCACCAGAACCACGACCAGGACCGACTGGTACGCCATTGGCTTTTGCCCAACGGATAAA 239 Query 39694 GTCGGCGACGACGAGGAAGTA 39714 ||| ||||| ||||||||| Sbjct 240 GTCCATGACGATGAGGAAGTA 260 >seq498792 Length=554 Score = 82.4 bits (90), Expect = 2e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 39534 GCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGT 39593 |||| || || || || ||||| ||||| |||||||| | || ||| | |||| Sbjct 1 GCATCGATACCCGTTCCGGGTTAAGGAATCGCTCGAACAGCAGGTCGTATTCCAGAGGGT 60 Query 39594 CCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAG 39653 | ||||| || ||| | | || || ||||||| || || | || ||||| |||| Sbjct 61 CAAGGTCAGTAATCTTTTGCACATAGGCCACCAGCGACCCGGCACCCGAACCACGGCCAG 120 Query 39654 GGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGT 39713 | || || || ||||| ||| ||||| ||| ||||| |||| ||||||| Sbjct 121 GACCTACTGGTACGCCGTTACTCTTGGCCCACTGGATAAAGTCCATCACGATCAGGAAGT 180 Query 39714 ACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCG 39751 | |||||||||||||||| | || || || | |||| Sbjct 181 AACCCGGGAACCCCATCTGGATAATGATATCCAGCTCG 218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159240048519300