Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_029009.1 Length=147589 Score E Sequences producing significant alignments: (Bits) Value seq511551 170 2e-37 seq516580 109 5e-19 seq250551 89.7 5e-13 >seq511551 Length=634 Score = 170 bits (188), Expect = 2e-37 Identities = 266/372 (72%), Gaps = 14/372 (4%) Strand=Plus/Minus Query 38489 TTAAATGAACCTGTTAGCTCAACAATTTTGTCATAGTTCAAAATATCAGGGTACATACGT 38548 ||||| ||| || | ||| ||||| || || ||||| | |||||||||||||||||| Sbjct 384 TTAAAACCACCAGTAACCTCTACAATCTTATCGTAGTTGATAATATCAGGGTACATACGC 325 Query 38549 TTAGCTGAACATTCTAATGCTAACTGTTTTACTTCATAGTTAGGGTCTTCTGGTTTACGG 38608 ||| | ||| |||| ||||||||||| | | |||||| |||||||| ||||| | Sbjct 324 TTACTGGCACACTCTAGAGCTAACTGTTTAATATTATAGTTTGGGTCTTCCTGTTTAAAG 265 Query 38609 TTAACTCCGTCTTTAATAGTGAACAATAATTTAGGGAAGATTGCTGTACGTCCTT-CTGT 38667 || || |||||||||||||| | | | |||||||| | ||||| | || || || Sbjct 264 TTGACACCGTCTTTAATAGTTAGGATAAGCTTAGGGAATACCGCTGT-CCTCTTTGATGC 206 Query 38668 TCCTAGACCTTGGATACGTACTTTAAAAATAGCTTTTTGGATTTCTCTT----TCCCAAC 38723 |||| |||| ||||| || | || || | ||| | || || ||| |||||| Sbjct 205 ACCTAAGCCTTTAATACGCACCTCAAGGATGGATTTCT-GAATTAGCTTAGACTCCCAA- 148 Query 38724 GTCCAGTACCTAAACCAAAACCAATAG-ACGTGAAAGGGG-TCTGACCATTCGATGTAAA 38781 | |||||||||||||||||| | | || ||||||| | || ||||| | ||| Sbjct 147 --CAAGTACCTAAACCAAAACCTACCGTAC--AAAAGGGGCTTTGTCCATTTGCTGTGTG 92 Query 38782 TAACGTATTGATTTCATACTCTAGGCTTTGCATTGCATCGTAAATATCTTTGTTTGTTTT 38841 ||| || || ||||| ||||| || ||||| | ||||| ||| | ||||| | ||| | Sbjct 91 TAAGGTGTTAATTTCGTACTCAAGACTTTGGAAAGCATCATAAGTCTCTTTCTCTGTCAT 32 Query 38842 CTCGATTGCATA 38853 || ||||||| Sbjct 31 CTTCGTTGCATA 20 >seq516580 Length=413 Score = 109 bits (120), Expect = 5e-19 Identities = 219/323 (68%), Gaps = 5/323 (2%) Strand=Plus/Plus Query 38380 ACGTGGTAAGTTAAGGGTTACTACTCCTAAATTCATACGACCAGAGTTTACTTCGTTTCC 38439 ||| |||||||| | | ||| || || || || |||| ||| | |||| ||| | Sbjct 92 ACGAGGTAAGTTGATTGATACAACACCCAAGTTATTACGTCCATCATATACTG-GTTCAC 150 Query 38440 ATGTTCAT----CTTTCCATCCTTGTAAGAATGAACGACAACCCATAGGACATTTAAATG 38495 |||| | || |||| | |||| |||||||||||| ||||| || | || || Sbjct 151 CTGTTACTGGGTCTGACCATTCGTGTAGGAATGAACGACAGCCCATTGGGTACTTGAACC 210 Query 38496 AACCTGTTAGCTCAACAATTTTGTCATAGTTCAAAATATCAGGGTACATACGTTTAGCTG 38555 ||| || ||||| | ||||| |||||||||||||| || |||||||| || | | Sbjct 211 CACCAGTAGTTTCAACTAACTTGTCGTAGTTCAAAATATCTGGATACATACGCTTGGTAG 270 Query 38556 AACATTCTAATGCTAACTGTTTTACTTCATAGTTAGGGTCTTCTGGTTTACGGTTAACTC 38615 |||||| | |||||||||||| | || |||||||| || || | ||||||| | Sbjct 271 CACATTCAACTGCTAACTGTTTGATGTCGTAGTTAGGATCATCAACTGAGTGGTTAACAC 330 Query 38616 CGTCTTTAATAGTGAACAATAATTTAGGGAAGATTGCTGTACGTCCTTCTGTTCCTAGAC 38675 | || | | || | |||||| || || | ||| ||| || ||| | || | || Sbjct 331 CCGACTTCACACCAAATACTAATTTTGGAAACACTGCGGTATTACCGTCTTTACCGATAC 390 Query 38676 CTTGGATACGTACTTTAAAAATA 38698 | ||||| ||||| || ||| Sbjct 391 CAGCTATACGCACTTTCAAGATA 413 >seq250551 Length=853 Score = 89.7 bits (98), Expect = 5e-13 Identities = 209/311 (67%), Gaps = 6/311 (2%) Strand=Plus/Minus Query 37604 GGGTCATTATTACCACATTGCGGGCATTCATAACCAT--CTGATGTAGGGTTAAACTCTC 37661 || |||| ||||||||||| ||||| || | || | ||| ||| |||||||| | Sbjct 699 GGCTCATGATTACCACATTTAGGGCACACAAACCCCTTACTG--GTACAATTAAACTCAC 642 Query 37662 CATCAAAACCGCATTCATGACATTTATCAATTGGGGTGTTTGTTCCAAGATAACCAACTT 37721 || ||||||||| || | ||| | |||||| || || || || || ||| ||| Sbjct 641 CAATAAAACCGCAATCGTAACACTCATCAATGGGAGTATTGGTGCCGTAATATGGCACTC 582 Query 37722 TATCGTAGCTGTAGTCCCAAACAGCTTCTAACGCCTTAAGGTTGTGAACTAGTTTAGGGT 37781 || ||||| |||||||| ||| | ||| | || ||||| | || || | Sbjct 581 GGCTATAACTGTAATCCCAAACGTTTTCGAGCGCTTCAATATTGTGCTGCATGTTGGGAT 522 Query 37782 ATTCTACATAATGGATAAAACCACCGGAAGCATATTTTGGAAACTCTTTTTCAAAATCAA 37841 |||| | ||| ||||| || || || |||| | || ||||||||||| Sbjct 521 ATTCGCCGTAACAAATAAACCCGCCATTGGCGATGGCTGGATAAGGTTGTTCAAAATCAA 462 Query 37842 TCTTTTCAAAAGG-TGTTGGAGCTTTGCGAACATCATAGTGGAAGCTATTTGTATAATAT 37900 |||| |||||||| | | |||| | |||||| ||||||||||||| || ||||| Sbjct 461 TCTTATCAAAAGGATTTACTTTCTTTTC-AACATCTAAGTGGAAGCTATTGGTGTAATAG 403 Query 37901 TCTTTATCTGT 37911 |||| || || Sbjct 402 CCTTTGTCGGT 392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 469055308216080