Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_029009.1
Length=147589
Score E
Sequences producing significant alignments: (Bits) Value
seq511551 170 2e-37
seq516580 109 5e-19
seq250551 89.7 5e-13
>seq511551
Length=634
Score = 170 bits (188), Expect = 2e-37
Identities = 266/372 (72%), Gaps = 14/372 (4%)
Strand=Plus/Minus
Query 38489 TTAAATGAACCTGTTAGCTCAACAATTTTGTCATAGTTCAAAATATCAGGGTACATACGT 38548
||||| ||| || | ||| ||||| || || ||||| | ||||||||||||||||||
Sbjct 384 TTAAAACCACCAGTAACCTCTACAATCTTATCGTAGTTGATAATATCAGGGTACATACGC 325
Query 38549 TTAGCTGAACATTCTAATGCTAACTGTTTTACTTCATAGTTAGGGTCTTCTGGTTTACGG 38608
||| | ||| |||| ||||||||||| | | |||||| |||||||| ||||| |
Sbjct 324 TTACTGGCACACTCTAGAGCTAACTGTTTAATATTATAGTTTGGGTCTTCCTGTTTAAAG 265
Query 38609 TTAACTCCGTCTTTAATAGTGAACAATAATTTAGGGAAGATTGCTGTACGTCCTT-CTGT 38667
|| || |||||||||||||| | | | |||||||| | ||||| | || || ||
Sbjct 264 TTGACACCGTCTTTAATAGTTAGGATAAGCTTAGGGAATACCGCTGT-CCTCTTTGATGC 206
Query 38668 TCCTAGACCTTGGATACGTACTTTAAAAATAGCTTTTTGGATTTCTCTT----TCCCAAC 38723
|||| |||| ||||| || | || || | ||| | || || ||| ||||||
Sbjct 205 ACCTAAGCCTTTAATACGCACCTCAAGGATGGATTTCT-GAATTAGCTTAGACTCCCAA- 148
Query 38724 GTCCAGTACCTAAACCAAAACCAATAG-ACGTGAAAGGGG-TCTGACCATTCGATGTAAA 38781
| |||||||||||||||||| | | || ||||||| | || ||||| | |||
Sbjct 147 --CAAGTACCTAAACCAAAACCTACCGTAC--AAAAGGGGCTTTGTCCATTTGCTGTGTG 92
Query 38782 TAACGTATTGATTTCATACTCTAGGCTTTGCATTGCATCGTAAATATCTTTGTTTGTTTT 38841
||| || || ||||| ||||| || ||||| | ||||| ||| | ||||| | ||| |
Sbjct 91 TAAGGTGTTAATTTCGTACTCAAGACTTTGGAAAGCATCATAAGTCTCTTTCTCTGTCAT 32
Query 38842 CTCGATTGCATA 38853
|| |||||||
Sbjct 31 CTTCGTTGCATA 20
>seq516580
Length=413
Score = 109 bits (120), Expect = 5e-19
Identities = 219/323 (68%), Gaps = 5/323 (2%)
Strand=Plus/Plus
Query 38380 ACGTGGTAAGTTAAGGGTTACTACTCCTAAATTCATACGACCAGAGTTTACTTCGTTTCC 38439
||| |||||||| | | ||| || || || || |||| ||| | |||| ||| |
Sbjct 92 ACGAGGTAAGTTGATTGATACAACACCCAAGTTATTACGTCCATCATATACTG-GTTCAC 150
Query 38440 ATGTTCAT----CTTTCCATCCTTGTAAGAATGAACGACAACCCATAGGACATTTAAATG 38495
|||| | || |||| | |||| |||||||||||| ||||| || | || ||
Sbjct 151 CTGTTACTGGGTCTGACCATTCGTGTAGGAATGAACGACAGCCCATTGGGTACTTGAACC 210
Query 38496 AACCTGTTAGCTCAACAATTTTGTCATAGTTCAAAATATCAGGGTACATACGTTTAGCTG 38555
||| || ||||| | ||||| |||||||||||||| || |||||||| || | |
Sbjct 211 CACCAGTAGTTTCAACTAACTTGTCGTAGTTCAAAATATCTGGATACATACGCTTGGTAG 270
Query 38556 AACATTCTAATGCTAACTGTTTTACTTCATAGTTAGGGTCTTCTGGTTTACGGTTAACTC 38615
|||||| | |||||||||||| | || |||||||| || || | ||||||| |
Sbjct 271 CACATTCAACTGCTAACTGTTTGATGTCGTAGTTAGGATCATCAACTGAGTGGTTAACAC 330
Query 38616 CGTCTTTAATAGTGAACAATAATTTAGGGAAGATTGCTGTACGTCCTTCTGTTCCTAGAC 38675
| || | | || | |||||| || || | ||| ||| || ||| | || | ||
Sbjct 331 CCGACTTCACACCAAATACTAATTTTGGAAACACTGCGGTATTACCGTCTTTACCGATAC 390
Query 38676 CTTGGATACGTACTTTAAAAATA 38698
| ||||| ||||| || |||
Sbjct 391 CAGCTATACGCACTTTCAAGATA 413
>seq250551
Length=853
Score = 89.7 bits (98), Expect = 5e-13
Identities = 209/311 (67%), Gaps = 6/311 (2%)
Strand=Plus/Minus
Query 37604 GGGTCATTATTACCACATTGCGGGCATTCATAACCAT--CTGATGTAGGGTTAAACTCTC 37661
|| |||| ||||||||||| ||||| || | || | ||| ||| |||||||| |
Sbjct 699 GGCTCATGATTACCACATTTAGGGCACACAAACCCCTTACTG--GTACAATTAAACTCAC 642
Query 37662 CATCAAAACCGCATTCATGACATTTATCAATTGGGGTGTTTGTTCCAAGATAACCAACTT 37721
|| ||||||||| || | ||| | |||||| || || || || || ||| |||
Sbjct 641 CAATAAAACCGCAATCGTAACACTCATCAATGGGAGTATTGGTGCCGTAATATGGCACTC 582
Query 37722 TATCGTAGCTGTAGTCCCAAACAGCTTCTAACGCCTTAAGGTTGTGAACTAGTTTAGGGT 37781
|| ||||| |||||||| ||| | ||| | || ||||| | || || |
Sbjct 581 GGCTATAACTGTAATCCCAAACGTTTTCGAGCGCTTCAATATTGTGCTGCATGTTGGGAT 522
Query 37782 ATTCTACATAATGGATAAAACCACCGGAAGCATATTTTGGAAACTCTTTTTCAAAATCAA 37841
|||| | ||| ||||| || || || |||| | || |||||||||||
Sbjct 521 ATTCGCCGTAACAAATAAACCCGCCATTGGCGATGGCTGGATAAGGTTGTTCAAAATCAA 462
Query 37842 TCTTTTCAAAAGG-TGTTGGAGCTTTGCGAACATCATAGTGGAAGCTATTTGTATAATAT 37900
|||| |||||||| | | |||| | |||||| ||||||||||||| || |||||
Sbjct 461 TCTTATCAAAAGGATTTACTTTCTTTTC-AACATCTAAGTGGAAGCTATTGGTGTAATAG 403
Query 37901 TCTTTATCTGT 37911
|||| || ||
Sbjct 402 CCTTTGTCGGT 392
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 469055308216080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |