Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq449735 203 4e-47 seq506238 156 5e-33 seq508109 127 2e-24 seq128994 102 9e-17 seq351952 95.1 1e-14 seq522862 89.7 6e-13 >seq449735 Length=3187 Score = 203 bits (224), Expect = 4e-47 Identities = 422/623 (68%), Gaps = 14/623 (2%) Strand=Plus/Minus Query 76965 CGTCCGGTCTGTGCGCGTTCCTGAACAAGCAACTGGAACAAATCTGCTGCTTTAATGCGT 77024 || ||||| ||| ||||| || ||| || ||||| || |||||||||||| Sbjct 647 CGACCGGTACTTGCACGTTCTTGCGCAAACATTGAGAACAGTTCAATAGCTTTAATGCGT 588 Query 77025 TTCTTGCGTACCGTTGGGTCTTTTTCCAAACTGGTATAGAGTTCTTCGAACTCAGTCTGA 77084 || || || | | | ||||| ||| | | ||| || | || ||||| |||| Sbjct 587 TTTTTACGAATTGATTCGTCTTGTTCGTATTTTACATAAAGCGCGTCAAACTC-GTCT-- 531 Query 77085 TCAGCTTGATAGAAAGCATCATACAGGCGATCATTTGCAACGTCAG---GGCTGAACAGT 77141 | ||| | | || ||||| || |||| || || |||| |||| |||| Sbjct 530 TGGTCTTCAAAAAATGCATCGTAAAGGCC------TGGCACATCAGAGGGGCTAAACAAG 477 Query 77142 GTGATGTAATCGTTATTGATTAAACGCTTATACATCAAATCGTTAAGCTGAACGCCATAA 77201 || ||||| |||| || ||||||||| ||||| | | |||| ||| ||||| ||| Sbjct 476 GTAATGTAGTCGTCTTTAATTAAACGCGAGTACATTAGTTTATTAAACTGTACGCCGTAA 417 Query 77202 TCCAGGTGACGAATACGGTTATTCTCAACACCTTTGTTGTTTTTCAGAACCAGCAGGTTT 77261 || | ||||| | ||||| | ||||| || ||| ||||| || || | ||||||| Sbjct 416 TCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAGTACTAACAGGTTT 357 Query 77262 TCAACTTCCAAATGCCAGATCGGATAATACAACGTTGCAGCACCACCACGAACGCCACCT 77321 || ||||| |||||||| | ||| || |||| ||||| || || ||||| || || ||| Sbjct 356 TCTACTTCTAAATGCCAAAGCGGGTAGAACAAGGTTGCTGCGCCGCCACGTACACCGCCT 297 Query 77322 TGTGAACAGGATTTAACCGCTGTCTGAATATGTTTCCAGAACGGGATCACGCCTGTAT-G 77380 || |||||| |||||||||||| |||| || || | || || || || |||| | Sbjct 296 TGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAATACAACCCGTATGG 237 Query 77381 TACTGCTTCACCACCACGGATTTTAGAACCCATTGCGCGAATGTGTCCAGCATTAACACC 77440 ||| ||||| ||| || || | ||||| ||| |||||| | || || |||| || Sbjct 236 TAC-GCTTCGCCATTGCGAATGTGGCTACCCAGTGCACGAATGCGACCTGCGTTAATGCC 178 Query 77441 GATACCCGCGCGTTGTGAAATATACTTCACGATCGCAGAGGTTACAGCATTCAGAGAACC 77500 || || || ||||| || | || || || || ||||| | || || | ||| | Sbjct 177 AATGCCGGCACGTTGCGATACGTATTTAACAATTGCAGACGAGGTGGCGTTAATTGAATC 118 Query 77501 CAGTGAATCACCTGATTCAATCACTACGCAACTGGAAAACTGACGCGTAGGAGTACGCAC 77560 || || || | || || | ||| || | |||||| || || || ||||| || Sbjct 117 AAGGCTGTCGCCACACTCTATTAATACACACGAGCTAAACTGGCGTGTTGGCGTACGAAC 58 Query 77561 ACCCGCCATAATAGGCGTAGGTA 77583 ||| |||||||| |||||||||| Sbjct 57 ACCTGCCATAATTGGCGTAGGTA 35 >seq506238 Length=275 Score = 156 bits (172), Expect = 5e-33 Identities = 145/184 (79%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 67742 ATTACATGCTTTCCGTAAAGGTTCTGGCGATAACGTCGCGCTGTTGTTCTGGAGTCAGTG 67801 |||||| |||| ||||| || | | | ||||| ||||||||||||| || | || Sbjct 38 ATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATG 97 Query 67802 CATTAAAGCGAACTGCGTAACCTGAAACGCGGATCGTTAACTGTGGGTACTTCTCAGGAT 67861 ||||| || |||||||||||||| || || || ||||| ||||| || || ||||| | Sbjct 98 AGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGT 157 Query 67862 GTTTCACAGCATCTTCCAGGGTTTCGCGACGTAGCACATTCACGTTTAGGTGCTGTCCAC 67921 |||| ||||||||||||| ||||| ||||||| |||||||||||||| || || |||| Sbjct 158 GTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCAC 217 Query 67922 CTTC 67925 |||| Sbjct 218 CTTC 221 >seq508109 Length=334 Score = 127 bits (140), Expect = 2e-24 Identities = 211/305 (69%), Gaps = 0/305 (0%) Strand=Plus/Plus Query 27230 GCGCGTTCTAAAGGCATTGTGCCGAACCTTACCATTGCCGATGTATCAAAAGACGTTGCA 27289 || ||||| |||| ||| | || || || || ||||| ||||| ||| |||| ||||| Sbjct 1 GCTCGTTCACAAGGTATTATCCCAAATCTAACAATTGCTGATGTGTCAGAAGAAGTTGCT 60 Query 27290 GCGCGGTTAGCGGCTGTTGCTGGGGCTGTTGCGGTATCGGTTTATAAACATGCTGGCTTC 27349 || ||||| | |||||||| ||| |||| ||||| ||||||||||| ||||| || Sbjct 61 GCTAAATTAGCATCAGTTGCTGGTGCTATTGCTGTATCAGTTTATAAACACGCTGGTTTT 120 Query 27350 GATGTCGCTTTCGACTCGGTAGCGAACCTGGCAGAAGCAGGACAACAGCAAATCAACCTT 27409 ||||| || || ||| || ||| | | | || || ||| ||||||||||||| Sbjct 121 GATGTAGCGTTTGACAGTGTTGCGCGTTTAACCGCTGCTGGTCAAAAGCAAATCAACCTA 180 Query 27410 CATTTCATGGTTAGCTCTAAAACCTATGATGACGCGTTTAACGTGGTTGACGCTGTGAAG 27469 || || ||| | || | || ||| || |||| || || ||| ||| |||| Sbjct 181 CACTTTATGATCAGTGGTCGTACTATTGAAGATGCGTATACTGTAACTGAAGCTATGAAA 240 Query 27470 AATGATCCGCGCCTGAAACAAGTCAATGCGATTGTGTTCCTGGGGCTGAAACAAAAGGGA 27529 | ||| || || | | || ||||| ||||||||| | |||| |||||||| Sbjct 241 ACTGACCCACGATTAGCTAATGTAAATGCTATTGTGTTCTTATCATTGAAGCAAAAGGGT 300 Query 27530 CGCGG 27534 ||||| Sbjct 301 CGCGG 305 >seq128994 Length=861 Score = 102 bits (112), Expect = 9e-17 Identities = 202/297 (68%), Gaps = 4/297 (1%) Strand=Plus/Plus Query 74998 TGAATAAGTGTTCAGCCCATTCTTTTTCCTGCTCGTAAACTTCGAGGAAAATCTTTGTTG 75057 ||||||||| | |||||||||||||| || || ||| || ||| | | | Sbjct 178 TGAATAAGTACTTGGCCCATTCTTTTTCTTGTTCCGCCGCTTTGACGAATAAGTCATACG 237 Query 75058 CTTCTTCTTCGTACTGATACGCGATTTCTGCCATTTCTGGGTCATCTTTACCCATCTGC- 75116 |||||| | ||| | || |||||| ||||||||||||| |||||||| |||| Sbjct 238 CTTCTTGCTTACACTCAGCAGCAATTTCTCCCATTTCTGGGTCGTCTTTACCACCCTGCA 297 Query 75117 -CAGAGTCGGATCTTGCTTTGAGTACCTTTCTGATGAAGTGCTTCATCACGGGCAATCAG 75175 ||||| | || ||| |||| || | || | ||||||||||||||||| | Sbjct 298 TCAGAGCTAAAATGTG--TTGTGTACTATTGAGGTGTAAGGCTTCATCACGGGCAATTAA 355 Query 75176 ACGCATGATCTTCGCGTTACCTTCCATCTTGCCCTGTTCGGCAAAGTTGAAAGTAAAGGT 75235 || || || || || ||||||||||| | |||| |||||| || | | ||| Sbjct 356 GCGAATAATTTTAGCATTACCTTCCATAACACGACGTTCAGCAAAGGCAAACGAACAGGC 415 Query 75236 AAACGAGACATAGAAACGGATCGCTTCCAGAGCGTTGACAGCGTGCATACACAGATA 75292 ||| ||||||||| || |||||||| | || ||||| | ||| |||| ||| Sbjct 416 AAAACTGACATAGAAGCGAATCGCTTCTAAGGCATTGACTGACATCATGCACAAATA 472 >seq351952 Length=416 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 67756 GTAAAGGTTCTGGCGATAACGTCGCGCTGTTGTTCTGGAGTCAGTGCATTAAAGCGAACT 67815 |||||||| | | ||| || || ||| |||||||| ||| | | ||||| || ||| Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTACT 93 Query 67816 GCGTAACCTGAAACGCGGATCGTTAACTGTGGGTACTTCTCAGGATGTTTCACAGCATCT 67875 |||||||| || || || || ||||| ||||| ||||| || |||| || || ||||| Sbjct 94 GCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATCC 153 Query 67876 TCCAGGGTTTCGCGACGTAGCACATTCACGTTTAGGTGCTGTCCACCTTCAA 67927 | |||| || | ||||| ||||||| ||| || |||||||||| Sbjct 154 AATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCAA 205 >seq522862 Length=256 Score = 89.7 bits (98), Expect = 6e-13 Identities = 122/168 (73%), Gaps = 12/168 (7%) Strand=Plus/Minus Query 75524 GTTACGCTGAATATGCGTATAACTGCGACTGTGAATTGTTTCACTGAAAGCCCATGTTTC 75583 |||||| ||||||| || || || | ||||| || || |||||||| | ||| ||||| Sbjct 163 GTTACGAAGAATATGTGTGTAGCTCTGGCTGTGGATAGTCTCACTGAAGGACCAGGTTTC 104 Query 75584 GATCCACGTTTCCATTGAAACATCAG---AGG---CAATCGGGAGAAACGCCAGGTTAGG 75637 |||||| || || ||| |||| ||| | ||||| || || |||| |||||| Sbjct 103 GATCCATGTCTC-----TAAC-TCAGGTAAGGATACGATCGGAAGTAATGCCATGTTAGG 50 Query 75638 GCCGCGTCCCTGAATGGTATCTAACAGGGTTTGATATTGCAGGTTAGA 75685 | || ||||| || | ||||| || |||||||||| |||||| || Sbjct 49 ACTACGACCCTGTATCGAGTCTAATAGTGTTTGATATTTCAGGTTTGA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564739424828160