Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_029013.1
Length=177688
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 203 4e-47
seq506238 156 5e-33
seq508109 127 2e-24
seq128994 102 9e-17
seq351952 95.1 1e-14
seq522862 89.7 6e-13
>seq449735
Length=3187
Score = 203 bits (224), Expect = 4e-47
Identities = 422/623 (68%), Gaps = 14/623 (2%)
Strand=Plus/Minus
Query 76965 CGTCCGGTCTGTGCGCGTTCCTGAACAAGCAACTGGAACAAATCTGCTGCTTTAATGCGT 77024
|| ||||| ||| ||||| || ||| || ||||| || ||||||||||||
Sbjct 647 CGACCGGTACTTGCACGTTCTTGCGCAAACATTGAGAACAGTTCAATAGCTTTAATGCGT 588
Query 77025 TTCTTGCGTACCGTTGGGTCTTTTTCCAAACTGGTATAGAGTTCTTCGAACTCAGTCTGA 77084
|| || || | | | ||||| ||| | | ||| || | || ||||| ||||
Sbjct 587 TTTTTACGAATTGATTCGTCTTGTTCGTATTTTACATAAAGCGCGTCAAACTC-GTCT-- 531
Query 77085 TCAGCTTGATAGAAAGCATCATACAGGCGATCATTTGCAACGTCAG---GGCTGAACAGT 77141
| ||| | | || ||||| || |||| || || |||| |||| ||||
Sbjct 530 TGGTCTTCAAAAAATGCATCGTAAAGGCC------TGGCACATCAGAGGGGCTAAACAAG 477
Query 77142 GTGATGTAATCGTTATTGATTAAACGCTTATACATCAAATCGTTAAGCTGAACGCCATAA 77201
|| ||||| |||| || ||||||||| ||||| | | |||| ||| ||||| |||
Sbjct 476 GTAATGTAGTCGTCTTTAATTAAACGCGAGTACATTAGTTTATTAAACTGTACGCCGTAA 417
Query 77202 TCCAGGTGACGAATACGGTTATTCTCAACACCTTTGTTGTTTTTCAGAACCAGCAGGTTT 77261
|| | ||||| | ||||| | ||||| || ||| ||||| || || | |||||||
Sbjct 416 TCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAGTACTAACAGGTTT 357
Query 77262 TCAACTTCCAAATGCCAGATCGGATAATACAACGTTGCAGCACCACCACGAACGCCACCT 77321
|| ||||| |||||||| | ||| || |||| ||||| || || ||||| || || |||
Sbjct 356 TCTACTTCTAAATGCCAAAGCGGGTAGAACAAGGTTGCTGCGCCGCCACGTACACCGCCT 297
Query 77322 TGTGAACAGGATTTAACCGCTGTCTGAATATGTTTCCAGAACGGGATCACGCCTGTAT-G 77380
|| |||||| |||||||||||| |||| || || | || || || || |||| |
Sbjct 296 TGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAATACAACCCGTATGG 237
Query 77381 TACTGCTTCACCACCACGGATTTTAGAACCCATTGCGCGAATGTGTCCAGCATTAACACC 77440
||| ||||| ||| || || | ||||| ||| |||||| | || || |||| ||
Sbjct 236 TAC-GCTTCGCCATTGCGAATGTGGCTACCCAGTGCACGAATGCGACCTGCGTTAATGCC 178
Query 77441 GATACCCGCGCGTTGTGAAATATACTTCACGATCGCAGAGGTTACAGCATTCAGAGAACC 77500
|| || || ||||| || | || || || || ||||| | || || | ||| |
Sbjct 177 AATGCCGGCACGTTGCGATACGTATTTAACAATTGCAGACGAGGTGGCGTTAATTGAATC 118
Query 77501 CAGTGAATCACCTGATTCAATCACTACGCAACTGGAAAACTGACGCGTAGGAGTACGCAC 77560
|| || || | || || | ||| || | |||||| || || || ||||| ||
Sbjct 117 AAGGCTGTCGCCACACTCTATTAATACACACGAGCTAAACTGGCGTGTTGGCGTACGAAC 58
Query 77561 ACCCGCCATAATAGGCGTAGGTA 77583
||| |||||||| ||||||||||
Sbjct 57 ACCTGCCATAATTGGCGTAGGTA 35
>seq506238
Length=275
Score = 156 bits (172), Expect = 5e-33
Identities = 145/184 (79%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 67742 ATTACATGCTTTCCGTAAAGGTTCTGGCGATAACGTCGCGCTGTTGTTCTGGAGTCAGTG 67801
|||||| |||| ||||| || | | | ||||| ||||||||||||| || | ||
Sbjct 38 ATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATG 97
Query 67802 CATTAAAGCGAACTGCGTAACCTGAAACGCGGATCGTTAACTGTGGGTACTTCTCAGGAT 67861
||||| || |||||||||||||| || || || ||||| ||||| || || ||||| |
Sbjct 98 AGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGT 157
Query 67862 GTTTCACAGCATCTTCCAGGGTTTCGCGACGTAGCACATTCACGTTTAGGTGCTGTCCAC 67921
|||| ||||||||||||| ||||| ||||||| |||||||||||||| || || ||||
Sbjct 158 GTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCAC 217
Query 67922 CTTC 67925
||||
Sbjct 218 CTTC 221
>seq508109
Length=334
Score = 127 bits (140), Expect = 2e-24
Identities = 211/305 (69%), Gaps = 0/305 (0%)
Strand=Plus/Plus
Query 27230 GCGCGTTCTAAAGGCATTGTGCCGAACCTTACCATTGCCGATGTATCAAAAGACGTTGCA 27289
|| ||||| |||| ||| | || || || || ||||| ||||| ||| |||| |||||
Sbjct 1 GCTCGTTCACAAGGTATTATCCCAAATCTAACAATTGCTGATGTGTCAGAAGAAGTTGCT 60
Query 27290 GCGCGGTTAGCGGCTGTTGCTGGGGCTGTTGCGGTATCGGTTTATAAACATGCTGGCTTC 27349
|| ||||| | |||||||| ||| |||| ||||| ||||||||||| ||||| ||
Sbjct 61 GCTAAATTAGCATCAGTTGCTGGTGCTATTGCTGTATCAGTTTATAAACACGCTGGTTTT 120
Query 27350 GATGTCGCTTTCGACTCGGTAGCGAACCTGGCAGAAGCAGGACAACAGCAAATCAACCTT 27409
||||| || || ||| || ||| | | | || || ||| |||||||||||||
Sbjct 121 GATGTAGCGTTTGACAGTGTTGCGCGTTTAACCGCTGCTGGTCAAAAGCAAATCAACCTA 180
Query 27410 CATTTCATGGTTAGCTCTAAAACCTATGATGACGCGTTTAACGTGGTTGACGCTGTGAAG 27469
|| || ||| | || | || ||| || |||| || || ||| ||| ||||
Sbjct 181 CACTTTATGATCAGTGGTCGTACTATTGAAGATGCGTATACTGTAACTGAAGCTATGAAA 240
Query 27470 AATGATCCGCGCCTGAAACAAGTCAATGCGATTGTGTTCCTGGGGCTGAAACAAAAGGGA 27529
| ||| || || | | || ||||| ||||||||| | |||| ||||||||
Sbjct 241 ACTGACCCACGATTAGCTAATGTAAATGCTATTGTGTTCTTATCATTGAAGCAAAAGGGT 300
Query 27530 CGCGG 27534
|||||
Sbjct 301 CGCGG 305
>seq128994
Length=861
Score = 102 bits (112), Expect = 9e-17
Identities = 202/297 (68%), Gaps = 4/297 (1%)
Strand=Plus/Plus
Query 74998 TGAATAAGTGTTCAGCCCATTCTTTTTCCTGCTCGTAAACTTCGAGGAAAATCTTTGTTG 75057
||||||||| | |||||||||||||| || || ||| || ||| | | |
Sbjct 178 TGAATAAGTACTTGGCCCATTCTTTTTCTTGTTCCGCCGCTTTGACGAATAAGTCATACG 237
Query 75058 CTTCTTCTTCGTACTGATACGCGATTTCTGCCATTTCTGGGTCATCTTTACCCATCTGC- 75116
|||||| | ||| | || |||||| ||||||||||||| |||||||| ||||
Sbjct 238 CTTCTTGCTTACACTCAGCAGCAATTTCTCCCATTTCTGGGTCGTCTTTACCACCCTGCA 297
Query 75117 -CAGAGTCGGATCTTGCTTTGAGTACCTTTCTGATGAAGTGCTTCATCACGGGCAATCAG 75175
||||| | || ||| |||| || | || | ||||||||||||||||| |
Sbjct 298 TCAGAGCTAAAATGTG--TTGTGTACTATTGAGGTGTAAGGCTTCATCACGGGCAATTAA 355
Query 75176 ACGCATGATCTTCGCGTTACCTTCCATCTTGCCCTGTTCGGCAAAGTTGAAAGTAAAGGT 75235
|| || || || || ||||||||||| | |||| |||||| || | | |||
Sbjct 356 GCGAATAATTTTAGCATTACCTTCCATAACACGACGTTCAGCAAAGGCAAACGAACAGGC 415
Query 75236 AAACGAGACATAGAAACGGATCGCTTCCAGAGCGTTGACAGCGTGCATACACAGATA 75292
||| ||||||||| || |||||||| | || ||||| | ||| |||| |||
Sbjct 416 AAAACTGACATAGAAGCGAATCGCTTCTAAGGCATTGACTGACATCATGCACAAATA 472
>seq351952
Length=416
Score = 95.1 bits (104), Expect = 1e-14
Identities = 124/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 67756 GTAAAGGTTCTGGCGATAACGTCGCGCTGTTGTTCTGGAGTCAGTGCATTAAAGCGAACT 67815
|||||||| | | ||| || || ||| |||||||| ||| | | ||||| || |||
Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTACT 93
Query 67816 GCGTAACCTGAAACGCGGATCGTTAACTGTGGGTACTTCTCAGGATGTTTCACAGCATCT 67875
|||||||| || || || || ||||| ||||| ||||| || |||| || || |||||
Sbjct 94 GCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATCC 153
Query 67876 TCCAGGGTTTCGCGACGTAGCACATTCACGTTTAGGTGCTGTCCACCTTCAA 67927
| |||| || | ||||| ||||||| ||| || ||||||||||
Sbjct 154 AATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCAA 205
>seq522862
Length=256
Score = 89.7 bits (98), Expect = 6e-13
Identities = 122/168 (73%), Gaps = 12/168 (7%)
Strand=Plus/Minus
Query 75524 GTTACGCTGAATATGCGTATAACTGCGACTGTGAATTGTTTCACTGAAAGCCCATGTTTC 75583
|||||| ||||||| || || || | ||||| || || |||||||| | ||| |||||
Sbjct 163 GTTACGAAGAATATGTGTGTAGCTCTGGCTGTGGATAGTCTCACTGAAGGACCAGGTTTC 104
Query 75584 GATCCACGTTTCCATTGAAACATCAG---AGG---CAATCGGGAGAAACGCCAGGTTAGG 75637
|||||| || || ||| |||| ||| | ||||| || || |||| ||||||
Sbjct 103 GATCCATGTCTC-----TAAC-TCAGGTAAGGATACGATCGGAAGTAATGCCATGTTAGG 50
Query 75638 GCCGCGTCCCTGAATGGTATCTAACAGGGTTTGATATTGCAGGTTAGA 75685
| || ||||| || | ||||| || |||||||||| |||||| ||
Sbjct 49 ACTACGACCCTGTATCGAGTCTAATAGTGTTTGATATTTCAGGTTTGA 2
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 564739424828160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |