Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_029057.1 Length=134742 Score E Sequences producing significant alignments: (Bits) Value seq511551 114 1e-20 seq516866 104 2e-17 >seq511551 Length=634 Score = 114 bits (126), Expect = 1e-20 Identities = 192/273 (70%), Gaps = 6/273 (2%) Strand=Plus/Minus Query 77365 CATACTTGCTTTAAAACTACCTGTAACTTCTACAGTTTTATCATAATTTAAGATATCAGG 77424 ||| ||||| ||||||| ||| ||||| |||||| | ||||| || || | |||||||| Sbjct 394 CATGCTTGCCTTAAAACCACCAGTAACCTCTACAATCTTATCGTAGTTGATAATATCAGG 335 Query 77425 GTAAAGTCGTTTACTTGAACATTCCAAAGCTAATTGTTTAATGTCATAGTTCGGATCTTC 77484 ||| | || ||||| | ||| || | |||||| |||||||| | |||||| || ||||| Sbjct 334 GTACATACGCTTACTGGCACACTCTAGAGCTAACTGTTTAATATTATAGTTTGGGTCTTC 275 Query 77485 TGGTTTATGATTTACACCATCCTTTACACTGTAGATTAGTTTAGGGAAAATTGGTGT--T 77542 ||||| || ||||| || || | | | ||| || |||||||| | | ||| | Sbjct 274 CTGTTTAAAGTTGACACCGTCTTTAATAGTTAGGATAAGCTTAGGGAATACCGCTGTCCT 215 Query 77543 ACATGATTCTTACCTAATCCATCAATTTGTGCTTGTAGTAT-CATCTCTTGAACTAATTT 77601 |||| | |||||| || | ||| | | | || || || || |||| || || Sbjct 214 CTTTGATGC--ACCTAAGCCTTTAATACGCACCTCAAGGATGGATTTC-TGAATTAGCTT 158 Query 77602 AGCTTCCCATGATGTCCCTAATCCAAACCCGAC 77634 || ||||| | || ||||| ||||| || || Sbjct 157 AGACTCCCAACAAGTACCTAAACCAAAACCTAC 125 Score = 114 bits (126), Expect = 1e-20 Identities = 192/273 (70%), Gaps = 6/273 (2%) Strand=Plus/Minus Query 76357 CATACTTGCTTTAAAACTACCTGTAACTTCTACAGTTTTATCATAATTTAAGATATCAGG 76416 ||| ||||| ||||||| ||| ||||| |||||| | ||||| || || | |||||||| Sbjct 394 CATGCTTGCCTTAAAACCACCAGTAACCTCTACAATCTTATCGTAGTTGATAATATCAGG 335 Query 76417 GTAAAGTCGTTTACTTGAACATTCCAAAGCTAATTGTTTAATGTCATAGTTCGGATCTTC 76476 ||| | || ||||| | ||| || | |||||| |||||||| | |||||| || ||||| Sbjct 334 GTACATACGCTTACTGGCACACTCTAGAGCTAACTGTTTAATATTATAGTTTGGGTCTTC 275 Query 76477 TGGTTTATGATTTACACCATCCTTTACACTGTAGATTAGTTTAGGGAAAATTGGTGT--T 76534 ||||| || ||||| || || | | | ||| || |||||||| | | ||| | Sbjct 274 CTGTTTAAAGTTGACACCGTCTTTAATAGTTAGGATAAGCTTAGGGAATACCGCTGTCCT 215 Query 76535 ACATGATTCTTACCTAATCCATCAATTTGTGCTTGTAGTAT-CATCTCTTGAACTAATTT 76593 |||| | |||||| || | ||| | | | || || || || |||| || || Sbjct 214 CTTTGATGC--ACCTAAGCCTTTAATACGCACCTCAAGGATGGATTTC-TGAATTAGCTT 158 Query 76594 AGCTTCCCATGATGTCCCTAATCCAAACCCGAC 76626 || ||||| | || ||||| ||||| || || Sbjct 157 AGACTCCCAACAAGTACCTAAACCAAAACCTAC 125 >seq516866 Length=361 Score = 104 bits (114), Expect = 2e-17 Identities = 187/271 (69%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 130365 AGGTTTGAAACTTCTACATGATAACATTGGAGCCATCTACGGTGATAGTATTACACTAGA 130424 |||||| || | || |||| | |||| ||||| || || ||| ||||| ||| Sbjct 333 AGGTTTTAAGTTACTTGATGAGCATGTTGGTGCCATTTATGGCGATGCAATTACTCTACC 274 Query 130425 ACGTCAGAAAGAGATTATTA-AGCGTTTAGAAGCTAAAGGCTATGCAGCTATGGTTGTTC 130483 || || |||| |||| |||||||| | |||||||| ||| ||| || ||| Sbjct 273 GCGCCAACGTCAGAT-ATTACAGCGTTTAATGGATAAAGGCTTTGCGTCTAAAGTGGTTT 215 Query 130484 TTGGTGTTGGTAGTTACTCATATCAATACGTAACTCGTGATACACATGGGTCTGCTGTAA 130543 | || ||||| ||| || || || || || |||||||| ||||| || || || | Sbjct 214 TAGGAATTGGTTCTTATAGCTACCAGTATGTCACCCGTGATACCCATGGTTCAGCAGTTA 155 Query 130544 AAGCAACTTGGGTTGAGAAGGCTGGTAAGGGTGTGGATGTATTCAAAGACCCTAAAACAG 130603 |||| ||| | || | || ||| || | |||| |||| ||||| |||||||||| Sbjct 154 AAGCTACTAGTGTGGTTAAAAACGGTGAGCGAGTGGCGATATTTAAAGATCCTAAAACAG 95 Query 130604 ACAGTAAGAAGAAATCTGCAAAAGGGTTACT 130634 | ||||| |||||||| ||||| ||||| Sbjct 94 ATGCGAAGAAAAAATCTGCTAAAGGATTACT 64 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428288918859666