Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_029057.1
Length=134742
Score E
Sequences producing significant alignments: (Bits) Value
seq511551 114 1e-20
seq516866 104 2e-17
>seq511551
Length=634
Score = 114 bits (126), Expect = 1e-20
Identities = 192/273 (70%), Gaps = 6/273 (2%)
Strand=Plus/Minus
Query 77365 CATACTTGCTTTAAAACTACCTGTAACTTCTACAGTTTTATCATAATTTAAGATATCAGG 77424
||| ||||| ||||||| ||| ||||| |||||| | ||||| || || | ||||||||
Sbjct 394 CATGCTTGCCTTAAAACCACCAGTAACCTCTACAATCTTATCGTAGTTGATAATATCAGG 335
Query 77425 GTAAAGTCGTTTACTTGAACATTCCAAAGCTAATTGTTTAATGTCATAGTTCGGATCTTC 77484
||| | || ||||| | ||| || | |||||| |||||||| | |||||| || |||||
Sbjct 334 GTACATACGCTTACTGGCACACTCTAGAGCTAACTGTTTAATATTATAGTTTGGGTCTTC 275
Query 77485 TGGTTTATGATTTACACCATCCTTTACACTGTAGATTAGTTTAGGGAAAATTGGTGT--T 77542
||||| || ||||| || || | | | ||| || |||||||| | | ||| |
Sbjct 274 CTGTTTAAAGTTGACACCGTCTTTAATAGTTAGGATAAGCTTAGGGAATACCGCTGTCCT 215
Query 77543 ACATGATTCTTACCTAATCCATCAATTTGTGCTTGTAGTAT-CATCTCTTGAACTAATTT 77601
|||| | |||||| || | ||| | | | || || || || |||| || ||
Sbjct 214 CTTTGATGC--ACCTAAGCCTTTAATACGCACCTCAAGGATGGATTTC-TGAATTAGCTT 158
Query 77602 AGCTTCCCATGATGTCCCTAATCCAAACCCGAC 77634
|| ||||| | || ||||| ||||| || ||
Sbjct 157 AGACTCCCAACAAGTACCTAAACCAAAACCTAC 125
Score = 114 bits (126), Expect = 1e-20
Identities = 192/273 (70%), Gaps = 6/273 (2%)
Strand=Plus/Minus
Query 76357 CATACTTGCTTTAAAACTACCTGTAACTTCTACAGTTTTATCATAATTTAAGATATCAGG 76416
||| ||||| ||||||| ||| ||||| |||||| | ||||| || || | ||||||||
Sbjct 394 CATGCTTGCCTTAAAACCACCAGTAACCTCTACAATCTTATCGTAGTTGATAATATCAGG 335
Query 76417 GTAAAGTCGTTTACTTGAACATTCCAAAGCTAATTGTTTAATGTCATAGTTCGGATCTTC 76476
||| | || ||||| | ||| || | |||||| |||||||| | |||||| || |||||
Sbjct 334 GTACATACGCTTACTGGCACACTCTAGAGCTAACTGTTTAATATTATAGTTTGGGTCTTC 275
Query 76477 TGGTTTATGATTTACACCATCCTTTACACTGTAGATTAGTTTAGGGAAAATTGGTGT--T 76534
||||| || ||||| || || | | | ||| || |||||||| | | ||| |
Sbjct 274 CTGTTTAAAGTTGACACCGTCTTTAATAGTTAGGATAAGCTTAGGGAATACCGCTGTCCT 215
Query 76535 ACATGATTCTTACCTAATCCATCAATTTGTGCTTGTAGTAT-CATCTCTTGAACTAATTT 76593
|||| | |||||| || | ||| | | | || || || || |||| || ||
Sbjct 214 CTTTGATGC--ACCTAAGCCTTTAATACGCACCTCAAGGATGGATTTC-TGAATTAGCTT 158
Query 76594 AGCTTCCCATGATGTCCCTAATCCAAACCCGAC 76626
|| ||||| | || ||||| ||||| || ||
Sbjct 157 AGACTCCCAACAAGTACCTAAACCAAAACCTAC 125
>seq516866
Length=361
Score = 104 bits (114), Expect = 2e-17
Identities = 187/271 (69%), Gaps = 2/271 (1%)
Strand=Plus/Minus
Query 130365 AGGTTTGAAACTTCTACATGATAACATTGGAGCCATCTACGGTGATAGTATTACACTAGA 130424
|||||| || | || |||| | |||| ||||| || || ||| ||||| |||
Sbjct 333 AGGTTTTAAGTTACTTGATGAGCATGTTGGTGCCATTTATGGCGATGCAATTACTCTACC 274
Query 130425 ACGTCAGAAAGAGATTATTA-AGCGTTTAGAAGCTAAAGGCTATGCAGCTATGGTTGTTC 130483
|| || |||| |||| |||||||| | |||||||| ||| ||| || |||
Sbjct 273 GCGCCAACGTCAGAT-ATTACAGCGTTTAATGGATAAAGGCTTTGCGTCTAAAGTGGTTT 215
Query 130484 TTGGTGTTGGTAGTTACTCATATCAATACGTAACTCGTGATACACATGGGTCTGCTGTAA 130543
| || ||||| ||| || || || || || |||||||| ||||| || || || |
Sbjct 214 TAGGAATTGGTTCTTATAGCTACCAGTATGTCACCCGTGATACCCATGGTTCAGCAGTTA 155
Query 130544 AAGCAACTTGGGTTGAGAAGGCTGGTAAGGGTGTGGATGTATTCAAAGACCCTAAAACAG 130603
|||| ||| | || | || ||| || | |||| |||| ||||| ||||||||||
Sbjct 154 AAGCTACTAGTGTGGTTAAAAACGGTGAGCGAGTGGCGATATTTAAAGATCCTAAAACAG 95
Query 130604 ACAGTAAGAAGAAATCTGCAAAAGGGTTACT 130634
| ||||| |||||||| ||||| |||||
Sbjct 94 ATGCGAAGAAAAAATCTGCTAAAGGATTACT 64
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428288918859666
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |