Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_029067.1 Length=138234 Score E Sequences producing significant alignments: (Bits) Value seq382105 125 6e-24 seq139160 120 3e-22 seq502529 98.7 9e-16 seq72118 96.9 3e-15 >seq382105 Length=334 Score = 125 bits (138), Expect = 6e-24 Identities = 219/315 (70%), Gaps = 13/315 (4%) Strand=Plus/Minus Query 18735 TAAATCCTCTTCCAGTGTAACCCCATCCCACTCACAAGT-AAAGCCTTCATAACCCGTAC 18793 ||| |||||||| | || || || ||||| | ||| ||| |||| || || | || Sbjct 333 TAAGTCCTCTTCAATAGTTACACCTTCCCAATTACATTCGAAATCCTTTGTAGCCAGCAC 274 Query 18794 CCGTCTTACGATCTGTTCTGGCAAGAGCATACTCATCTCCGGTTTCTGGATGTAAGAATA 18853 | | |||||| || || | || || ||||| ||||| ||| | || |||| |||| Sbjct 273 CAGACTTACGTTCAGTACGAGCTAGGGCATATTCATCCTTTGTTACAGGGTGTAGAAATA 214 Query 18854 CGGGAAAGTCTTTACCTACCTGCTTGAAACCTAACGACAACATTTCCTC--TGGACTACT 18911 | ||||| ||| ||| || | ||||| || | || ||||||||||| |||| ||| Sbjct 213 CAGGAAAATCTGCACCAACTTTATTGAAGCCAAGTGATAACATTTCCTCAGTGGA--ACT 156 Query 18912 CCCAACCACAACATAATCTTTATCTTTAGGGATCTTACCCATGAAGTGGTCACGAACAAA 18971 || || || |||||||| ||||||||||| || || | |||| | ||||| ||||| Sbjct 155 ACCCACAACTACATAATCCTTATCTTTAGGTATTACTCCTAAGAAGCGATCACGTACAAA 96 Query 18972 ACCTCCAACCAAGTATATTGTGGCATTTTTAAAATC------TCCATGAACACCCATAAT 19025 ||||| || | ||| ||||| | || | ||||| ||| || | || |||||| Sbjct 95 TCCTCCTACAAGGTAGATTGTCACTTTACTGAAATCAAAGTTTCCGTGTATACTCATAAT 36 Query 19026 ACTTCTCCTCCTCTT 19040 || | ||||||| Sbjct 35 --TTATTATCCTCTT 23 >seq139160 Length=2870 Score = 120 bits (132), Expect = 3e-22 Identities = 240/352 (68%), Gaps = 14/352 (4%) Strand=Plus/Plus Query 18588 GCGTAAGGGATCTTCTTTAAATGCATCCGACACGGGACGTAACATTTTATTTTTAATATC 18647 |||||| |||||||| |||| ||||| ||||| | || | |||||| |||||||| Sbjct 853 GCGTAAAGGATCTTCAGTAAAGGCATCTGACACATGGCGAAGTATTTTAGCGTTAATATC 912 Query 18648 TCCCCTTCCATTGAAAGGGTCGTACACTTTACCAAGGTTTCGTGAACAATCCCAAGCAAT 18707 | | | || | ||| ||||| | | ||| || |||| || || || || Sbjct 913 TGCGATACCGTGGAACGGGTC-----CGT---CAATGTGCCGTGCTCA-TCTTGTGCGAT 963 Query 18708 TGCATTGATGGTTAGATCACGTCTACGTAAATCCTCTTCCAGTGTAACCCCATCC----C 18763 ||||| ||||||| |||||| | ||| || || || || || | | | Sbjct 964 GGCATTAATGGTTAAATCACGGCGTAATAAGTCTTCGGTGAGGGTGACATCTTTGTTGGC 1023 Query 18764 ACTCACAAGTAAAGCCTTCATAACCCGTACCCGTCTTACGATCTGTTCTGGCAAGAGCAT 18823 | |||||| |||| |||| ||| || ||| || || || ||||||||||| || || | Sbjct 1024 A-TCACAACTAAAACCTTGATAGCCATAACCGGTTTTCCGTTCTGTTCTGGCTAGTGCGT 1082 Query 18824 ACTCATCTCCGGTTTCTGGATGTAAGAATACGGGAAAGTCTTTACCTACCTGCTTGAAAC 18883 | || | |||| || ||||| || || |||||||||||||| || |||| ||| Sbjct 1083 ATTCTTGCTGAGTTTTAGGGTGTAAAAAAACAGGAAAGTCTTTACCGACTTGCTGATAAC 1142 Query 18884 CTAACGACAACATTTCCTCTGGACTACTCCCAACCACAACATAATCTTTATC 18935 | || | | |||||| ||| || || ||||| || |||||||||||||| Sbjct 1143 CCAATGCGAGCATTTCTTCTACGCTGCTGCCAACAACCACATAATCTTTATC 1194 >seq502529 Length=487 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/187 (73%), Gaps = 5/187 (3%) Strand=Plus/Minus Query 18702 AGCAATTGCATTGATGGTTAGATCACGTC-TACGTAAATCCTCTTCCAGTGTAACCCCAT 18760 ||| |||||||||||||| ||||| |||| | || | ||| ||||| | | || | | Sbjct 472 AGCTATTGCATTGATGGTGAGATCGCGTCGTGCG-AGATCATCTTCTAAACTGACATCTT 414 Query 18761 --CCCAC-TCACAAGTAAAGCCTTCATAACCCGTACCCGTCTTACGATCTGTTCTGGCAA 18817 ||| | | || |||| ||| |||||| | || ||| || |||||||| || | Sbjct 413 GACCCGCGTAGCAGCTAAAACCTGTATAACCAATCCCTTGCTTGCGCTCTGTTCTTGCCA 354 Query 18818 GAGCATACTCATCTCCGGTTTCTGGATGTAAGAATACGGGAAAGTCTTTACCTACCTGCT 18877 | ||||| || ||||| |||| |||||||| ||||| || |||||||| ||||| || | Sbjct 353 GTGCATATTCTTCTCCTGTTTTAGGATGTAAAAATACTGGGAAGTCTTTGCCTACTTGAT 294 Query 18878 TGAAACC 18884 |||| || Sbjct 293 TGAAGCC 287 >seq72118 Length=817 Score = 96.9 bits (106), Expect = 3e-15 Identities = 224/336 (67%), Gaps = 34/336 (10%) Strand=Plus/Plus Query 26445 CTCGTGGTGGTGACCGTAACTTCGCTGGTGACGATCAAGCACAAAAAGAAAGCTTCCGTA 26504 ||||||||| ||||||||| | || ||| | ||| | | | ||||| | |||| Sbjct 291 CTCGTGGTGCTGACCGTAATTATGCGGGTCAAGATAACTCTCGTAAAGAGATGTTCCCAG 350 Query 26505 TTCCTTTCTTCCCACTAGATAAAGTGACTACTCCTGCAGAAGTTCAAGGCTTCCGTCAAT 26564 |||| |||||||| |||||| || ||| |||||||| || | ||||||| || Sbjct 351 TTCCATTCTTCCCTCTAGATGCTAAGATTACCCCTGCAGATGTATTAAACTTCCGT--AT 408 Query 26565 GG--GGTACTGAGGATGCACCTGCTAACG------TTGAGACTCTAGTTAATCGTCGTGT 26616 | |||||||| | || |||||| | |||| | |||| || ||||| Sbjct 409 GATTGGTACTGAA-----AGCT-CTAACGAAACAATCGAGAATAAAGTTCGTCAACGTGT 462 Query 26617 TGAGCGTATCCAACGTTCTCATGCTAAACTTCGTCGTGATGCATTCTACACAGCTCTTGT 26676 || | |||||||||||| |||||| |||| |||| | ||| | |||| |||||||| Sbjct 463 TGGTCATATCCAACGTTCACATGCTGAACTAGTTCGTAAAGCAATGTACAAGGCTCTTGT 522 Query 26677 TTCTAA----------CAA--GGTTCACGCTAAGAAAGGTGGCGTAGATACTGCACTTGC 26724 ||||| ||| | || | |||| ||| |||| | | || Sbjct 523 ATCTAACTCTACTTACCAACCGATTGATGCTA------TTGGTACAGATGGTCCTGATGT 576 Query 26725 TAAGAACTTCTCTACAGTTTGGGGTGGTGCTCGTAA 26760 |||||||||||| ||||| ||||||| | ||||||| Sbjct 577 TAAGAACTTCTCAACAGTATGGGGTGCTCCTCGTAA 612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 439315951064480