Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_029091.1
Length=168771
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 192 6e-44
seq509673 132 5e-26
seq506238 120 3e-22
>seq449735
Length=3187
Score = 192 bits (212), Expect = 6e-44
Identities = 485/734 (66%), Gaps = 5/734 (1%)
Strand=Plus/Plus
Query 41901 AAGTTTCATTGCCAACCCCAATTATGGCAGGTGCTCGTACTCCGACTCGCCAGTTCT-CT 41959
|| ||||| | || || |||||||||||||||| |||||| || || |||||||| ||
Sbjct 26 AAATTTCACTACCTACGCCAATTATGGCAGGTGTTCGTACGCCAACACGCCAGTTTAGCT 85
Query 41960 AGTTGTGTAGTTATTGAAGCCGGTGATTCGTTAAAATCTATTAACAAAACTTCAGCATCA 42019
|| ||||| | || || || || | | || |||||| || || | ||
Sbjct 86 CGT-GTGTATTAATAGAGTGTGGCGACAGCCTTGATTCAATTAACGCCACCTCGTCTGCA 144
Query 42020 ATTATTGAATATATTTCTAAACGAGCTGGTATCGGTATCAACGTTGGTATGCTTCGTGCA 42079
||| || |||| | || |||| || || || || || |||| ||| ||||||||
Sbjct 145 ATTGTTAAATACGTATCGCAACGTGCCGGCATTGGCATTAACGCAGGTCGCATTCGTGCA 204
Query 42080 GAAGGTTCTAAGATCGGTATGGGTGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAA 42139
||| | || | | || |||| ||||||||| |||||| || | ||
Sbjct 205 CTGGGTAGCCACATTCGCAATGGCGAAGCGTACCATACGGGTTGTATTCCTTTTTATAAG 264
Query 42140 CATTTCCAAACTGCAGTAAAATCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACA 42199
|| || ||||| || || ||| ||||| ||||| ||| | ||||| || || || ||
Sbjct 265 CACTTTCAAACAGCGGTTAAAAGCTGTTCGCAAGGCGGTGTACGTGGCGGCGCAGCAACC 324
Query 42200 GCGTATTATCCGATGTGGCACTTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAA 42259
|| || ||| | ||||| ||||||||||| ||||| ||||| || |||||||||
Sbjct 325 TTGTTCTACCCGCTTTGGCATTTAGAAGTAGAAAACCTGTTAGTACTTAAAAATAACCGC 384
Query 42260 GGCGTGGATGAAAACCGTATTCGACATATGGACTACGGAATTCAGATTAATGACCTTATG 42319
|| || ||||| ||||| | || ||| | || ||||| | ||| ||||| | || |||
Sbjct 385 GGGGTTGATGACAACCGCGTGCGTCATTTAGATTACGGCGTACAGTTTAATAAACTAATG 444
Query 42320 ATGGAACGCCTTGGTAAAAATGATTATATTACTTTATTTAGCCCTCACGAAATGTCAGGC 42379
|| | |||| | || || ||||| || |||||||| || || |||||
Sbjct 445 TACTCGCGTTTAATTAAAGACGACTACATTACCTTGTTTAGCCCCTCTGATGTGCCAGGC 504
Query 42380 GAACTATACTACTCGTTCTTTGAAGATCAAGATAAATTCCGTGAGCTTTATGAGAAAGCT 42439
|| ||| | | || |||||||| ||||| | || | |||||||| |||
Sbjct 505 ---CTTTACGATGCATTTTTTGAAGACCAAGACGAGTTTGACGCGCTTTATGTAAAATAC 561
Query 42440 GAAAAAGACCCAACAATCAGAAAGAAAAGAATCAAAGCACTAGAACTCTTTGAATTGTTC 42499
||| ||||| | |||| | || ||| | || ||||| | ||||| || | ||||
Sbjct 562 GAACAAGACGAATCAATTCGTAAAAAACGCATTAAAGCTATTGAACTGTTCTCAATGTTT 621
Query 42500 ATGACTGAACGTTCTGGCACCGCTCGAATTTATCCGCAATTCGTTGATAACACGAACAAC 42559
| |||||| | | |||| ||| ||||| ||| |||||| || || |
Sbjct 622 GCGCAAGAACGTGCAAGTACCGGTCGTATTTACTTACAAAACGTTGACCACTGTAATACG 681
Query 42560 TACACTCCATTTATTCGTGAAAAAGCTCCAATTCGTCAGAGTAACTTATGTTGTGAAATC 42619
||| || || ||| | || || || ||||| || ||| ||||||| |||||
Sbjct 682 CACAGCCCGTTCATTGCTAAAGTGGCACCTATTCGCCAATCTAATTTATGTTTAGAAATT 741
Query 42620 GCTATTCCAACTAA 42633
|| | ||||||||
Sbjct 742 GCATTACCAACTAA 755
>seq509673
Length=441
Score = 132 bits (146), Expect = 5e-26
Identities = 148/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 42113 CATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCTCAA 42172
||||||||| ||| ||||||| |||| ||||||||||| || |||| || || |||
Sbjct 418 CATACGGGTTGTATCCCATTCTATAAACTGTTCCAAACTGCTGTTAAATGCTGCTCACAA 359
Query 42173 GGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTAGAG 42232
|| || | ||||| ||||| || || || ||| || | ||||| |||||||| |||
Sbjct 358 GGCGGCGTCCGTGGCGGTGCAGCGACGTTGTTTTACCCATTATGGCATTTAGAAGTTGAG 299
Query 42233 AACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATATGGAC 42292
|||| || |||||||||||| |||||||| || |||||| | || ||||||||
Sbjct 298 TCATTATTGGTACTGAAAAATAACCGCGGCGTGGAAGACAACCGTGTCCGTCATATGGAT 239
Query 42293 TACGGAATTCAGATTAAT 42310
||||| | ||| | |||
Sbjct 238 TACGGCGTACAGTTAAAT 221
>seq506238
Length=275
Score = 120 bits (132), Expect = 3e-22
Identities = 126/166 (76%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 123121 GTCAACATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTAGAAGATGCAGTTAAGCATC 123180
|||||||| | ||||| || || | ||||||||||| | |||||||| ||||| || |
Sbjct 214 GTCAACATTTAAACGTGAATGTGTTACGTCGTGAAACATTGGAAGATGCTGTTAAACACC 155
Query 123181 CAGAAAAATATCCGCAGCTGACCATCCGTGTATCTGGTTATGCAGTTCGCTTTAACTCTC 123240
| ||||||||||| || | || || |||||||| ||||| ||||| || ||||||||
Sbjct 154 CTGAAAAATATCCACAATTAACTATTCGTGTATCAGGTTACGCAGTGCGTTTTAACTCAT 95
Query 123241 TGACTCCGGAACAGCAGCGCGACGTTATCGCTCGCACCTTTACTGA 123286
| || || ||||| |||| ||||| | | || || ||||| ||
Sbjct 94 TAACACCAGAACAACAGCAAGACGTATTAACACGTACATTTACAGA 49
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 536392460881520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |