Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_029094.1
Length=131903
Score E
Sequences producing significant alignments: (Bits) Value
seq461164 369 3e-97
seq522553 183 3e-41
seq519289 152 4e-32
seq520901 141 8e-29
seq517215 120 3e-22
seq434712 91.5 1e-13
>seq461164
Length=583
Score = 369 bits (408), Expect = 3e-97
Identities = 404/531 (76%), Gaps = 11/531 (2%)
Strand=Plus/Minus
Query 103695 GCAAGTGCGGCGTTATGGGTTTTATTCTTTTGGGTGTTGTTAGTATGAACTGGTCTGAAT 103754
|| |||| || | | ||| | | ||||||||| || || |||||| ||||| || |
Sbjct 525 GCTAGTGTGGTGCTGTGGACTCTGTTCTTTTGG---TTAATACTATGAATTGGTCAGACT 469
Query 103755 TAGGTAAAAAGGTTGCTGATTTTGCTCCGCTGTTAGGCTCTGTACTTGGTCCTGCTGGTG 103814
||||||||||||||||||||||||| ||||| ||||| || | | | || || | ||||
Sbjct 468 TAGGTAAAAAGGTTGCTGATTTTGCACCGCTTTTAGGGTCAGCATTAGGCCCAGTCGGTG 409
Query 103815 CGGGTGTTGGTGCGCTAATATCGTCTGAGTTTGGCACAGATAACACGCCAGACGCGATTA 103874
|||||||||| ||| |||||||||| |||||||| || || |||||||||||||| ||||
Sbjct 408 CGGGTGTTGGCGCGTTAATATCGTCAGAGTTTGGTACTGAAAACACGCCAGACGCTATTA 349
Query 103875 ATAGCTTTTTAGTTGGCAATCCTGAATCGCAAGTGAAGTTAAAAGAAATAGAGTTAACAC 103934
| ||||| | ||||||||| || ||||||| ||| | ||||| ||| ||||||
Sbjct 348 ACAGCTTCATTACTGGCAATCCAGAGGCGCAAGTTAAGCTCCGTGAAATTGAGCTAACAC 289
Query 103935 ACAAAACAAGATTGCAGCAAATTAAGCTGGAAACACTACAGGCTGAGCTTGGTGATAAAG 103994
| ||| || | | || ||||||| || ||||| || || |||||| | | || || |
Sbjct 288 ATAAATCACAACTTCAAAAAATTAAACTTGAAACTCTGCAAGCTGAGTTAAGCGACAAGG 229
Query 103995 CCAATGCAAGGCAAGCGCACAGCCAAAGTAAAATGCCAGCCTATTTAAG-TGTTGGCTT- 104052
| || |||||||| |||||||| ||||| ||||||||||| |||||||| | | |||||
Sbjct 228 CAAACGCAAGGCAGGCGCACAGACAAAGCAAAATGCCAGCTTATTTAAGCTTTGGGCTTA 169
Query 104053 -AACTGTGCTTATAGCATTGCTAGTTTTCTTGTTG-TTTTACGTTGATGTGCC-TACAGG 104109
|| || || | ||| || |||||| || ||||||||||||||||| | |
Sbjct 168 CAATATTGATTGGTACTTTG---GTATTCTTGCTGTTTTTACGTTGATGTGCCGGAGGGT 112
Query 104110 AAGTCGCGAGGTTTTGTTTATGTTGCTTGGCGTTGTTGTTAAGGAATGGGGTAGCGCTAT 104169
| |||| || || || |||||| | | |||||||| ||||| || ||||| ||||| ||
Sbjct 111 ATGTCGTGAAGTCTTATTTATGCTTTTGGGCGTTGTAGTTAAAGAGTGGGGCAGCGCAAT 52
Query 104170 GCAGTTCTGGTTTGGTACAACTCGCAGCAGTGCAGACAAAACAAGATTGAT 104220
||| ||||||||||| ||||| | || ||||| || ||||| ||||| ||
Sbjct 51 GCAATTCTGGTTTGGAACAACAAGAAGTAGTGCTGATAAAACTAGATTAAT 1
Score = 125 bits (138), Expect = 6e-24
Identities = 153/206 (74%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 19520 ATCAATCTTGTTTTATCTGCGCTACTGCGTGTTGTGCCAAACCAAAACTGCATAGCACTA 19579
|| ||||| |||||||| || ||||| | |||||| |||||||| || ||||| || ||
Sbjct 1 ATTAATCTAGTTTTATCAGCACTACTTCTTGTTGTTCCAAACCAGAATTGCATTGCGCTG 60
Query 19580 CCCCACTCTTTAACCACAACGCCTAGCAGCATAAATAACACCTCACGGC-TACCTGTAGG 19638
|||||||||||||| |||||||| | ||||||||||| || ||||| | |||| ||
Sbjct 61 CCCCACTCTTTAACTACAACGCCCAAAAGCATAAATAAGACTTCACGACATACCCTCCGG 120
Query 19639 TACATCGACCCAAAACAACATAAACACTATCAACAT---TATGATTAAAGTTAACCCTAC 19695
||||| || ||| |||| || | || ||| | || | || || | ||| |
Sbjct 121 CACATCAACGTAAA--AACAGCAAGAATACCAAAGTACCAATCAATATTGTAAGCCCAAA 178
Query 19696 ACTTAAATAGACTGGCATTTTACTTT 19721
|||||||| |||||||||| ||||
Sbjct 179 GCTTAAATAAGCTGGCATTTTGCTTT 204
>seq522553
Length=510
Score = 183 bits (202), Expect = 3e-41
Identities = 194/253 (77%), Gaps = 2/253 (1%)
Strand=Plus/Plus
Query 123576 ATGAGTTATACTAAAAGAGAGGATATTAAGCCTCAAAAAGGGAAACAATCCCTTGTTATG 123635
||||||||| || | ||||||||| || ||| ||||| ||| || || |||
Sbjct 258 ATGAGTTATGAGAAGAAGGAGGATATTCGCCCCCAAGCGGGGAAGCAACTCCAAGTAATG 317
Query 123636 AAAATGATAAGAGACCAAGAAGTAGATTTCATGTTATGTGGAGGG-GCACGTGCAGGGGG 123694
| ||||| || ||||||||||||| |||||| | ||||| || || ||||| || ||
Sbjct 318 CAGATGATCAGGAACCAAGAAGTAGACTTCATGCTCTGTGGTGGATGCTCGTGC-GGTGG 376
Query 123695 TAAGAGTGAGCTCTTATCTATGATGCCCTTACTTTTTGCACACGATAAACAATACCGTGG 123754
||| ||||| || | || ||||||||| |||| ||||| ||||||||||| ||||||||
Sbjct 377 TAAAAGTGAACTACTCTCCATGATGCCCCTACTCTTTGCTCACGATAAACAGTACCGTGG 436
Query 123755 TATATTCTTCCGTAAATCGTTCCAAGAAATTATGGGAGCTAATGGTCTTTGGCAAAAAGC 123814
|||||||||| | | | || | | ||||| |||||||| ||||| | ||||| || ||
Sbjct 437 TATATTCTTCAGAAGACAGTACGATGAAATAATGGGAGCCAATGGCTTGTGGCAGAAGGC 496
Query 123815 TCAGAACATGTAT 123827
||||||||||||
Sbjct 497 ACAGAACATGTAT 509
>seq519289
Length=421
Score = 152 bits (168), Expect = 4e-32
Identities = 154/199 (77%), Gaps = 1/199 (1%)
Strand=Plus/Plus
Query 64196 GTCCACTCCATACCTTCGTACTCATGTCCTTTCTTCTCACAGTGCCCCATTTCTATACCA 64255
||||| ||||| ||||| |||| ||| |||||||||||||| ||||| || |||||
Sbjct 138 GTCCAGTCCATGCCTTCATACTTATGACCTTTCTTCTCACATACTCCCATCTCAATACCG 197
Query 64256 ATAGCATTTCTGTTGAGGTTGTTTGCTGCCTTGATAGTAGACCCACTACCCATTGTAAAA 64315
||||| || | ||| |||||| | || || ||| |||| ||||||||||| || |||
Sbjct 198 ATAGCTTTACGGTTCAGGTTGGTAGCAGCTCTGAATGTAGCACCACTACCCATGGTGAAA 257
Query 64316 TCTAAGATAGTTTCACCTCCATTAGTGTAGGTTTTTATTAGGTACTCCATTAGAGCAACT 64375
|||| || ||| |||||| ||| |||||| || || || | || |||||| || | |||
Sbjct 258 TCTAGGACAGTCTCACCTTCATCAGTGTATGTCTTAATCATGT-CTCCATGAGTTCCACT 316
Query 64376 GGTTTTTGTGTTGGATGTA 64394
|| |||||||| || ||||
Sbjct 317 GGCTTTTGTGTAGGGTGTA 335
>seq520901
Length=491
Score = 141 bits (156), Expect = 8e-29
Identities = 137/176 (78%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 17485 AAGTGTACGAAGTGCGTAAAACTTCTGATGATTCATTAGCTACCATTTACAGTGATGCCG 17544
|||| || |||||||||||| || |||| | ||||||| || |||||| |||| |
Sbjct 94 AAGTTTATGAAGTGCGTAAAGTGTCAGATGGTACATTAGCGACTATTTACTCGAATGCGG 153
Query 17545 CTGGTACGGCTGAGATCGTGCAGAATGGTACGAGTAACGTATCGGGTAGTGATGGTGTTG 17604
| ||||| || |||| ||||| ||||||| ||||||||||| | ||||| ||| ||||
Sbjct 154 CAAGTACGACTAAGATTGTGCAAAATGGTAAAAGTAACGTATCTGATAGTGCTGGCGTTG 213
Query 17605 TTGAGTTTTTTATTGCTGAGGGGGATTATTATGTTGAGGTTGGTGGGGTTAGTGCT 17660
||||||||| |||||| || || |||||| | ||| || | || ||||||||||
Sbjct 214 TTGAGTTTTATATTGCAGATGGCGATTATAAAGTTACGGCTAATGCGGTTAGTGCT 269
Score = 91.5 bits (100), Expect = 1e-13
Identities = 134/189 (71%), Gaps = 3/189 (2%)
Strand=Plus/Minus
Query 106357 AACAACCCCATCACTACCCGATTTATTATCAGTACCATTCTGCACAATCTCAGTCGTACC 106416
|||||| ||| ||||| | ||| ||| ||||||| |||||||||| ||||||||
Sbjct 215 AACAACGCCAGCACTATCAGATACGTTACTTTTACCATTTTGCACAATCTTAGTCGTACT 156
Query 106417 AGCTGCATCACTGTATATAGTTGCTAATGAGTCATCGGAAGTCTTACGTACTTCGTACAC 106476
|| |||| ||| ||||| ||||||| |||| || ||||| ||||| || ||
Sbjct 155 TGCCGCATTCGAGTAAATAGTCGCTAATGTACCATCTGACACTTTACGCACTTCATAAAC 96
Query 106477 TTCACCAGCGTCAACCGTGCGAGTTTGTATTTCAGTTAATCCGCCATCAGTAGGCGATTG 106536
|| | ||| | || || || | |||| ||||||||| |||||| || | ||
Sbjct 95 TTGGCTAGCAGTTAGAGTACGGGTGTTAATTTTAGTTAATCC---ATCAGTTGGTGCCTG 39
Query 106537 AAATATTTT 106545
|||||||||
Sbjct 38 AAATATTTT 30
>seq517215
Length=535
Score = 120 bits (132), Expect = 3e-22
Identities = 192/273 (70%), Gaps = 11/273 (4%)
Strand=Plus/Plus
Query 64637 AAGTGTCCTGTTCCTTTAGGTTTCTTCCAAACCCAGTCATATTTAAACATTTTCAAATTA 64696
|||| ||||| |||| ||| | |||| |||| |||||||||||| |||| |||
Sbjct 44 AAGTTTCCTG---CTTTTTCTTTTTCCCAATACCAGCAATATTTAAACATCTTCATATT- 99
Query 64697 CTTGAAACCAACACGC----TGGTAAACGGTTGCGCGGCAGTTATAACAATTGCCCCGTT 64752
|||| |||| | || | || || || || ||||| ||||| || || || ||
Sbjct 100 --TGAA-CCAATAAGCACTGTAGTGAAAGGCTGACTAGCAGTCATAACTATAGCGCCATT 156
Query 64753 AGGCTTAATGATTCGCTTCAACTGCTCCCACATAGGTTCGAGTGGTATTACACTGTCCCA 64812
|||||| || ||||| || ||||| |||||||| ||||| || || || || |||||
Sbjct 157 AGGCTTTATAATTCGTTTTAACTGTTCCCACATCGGTTCAAGAGGAATAACTGAATCCCA 216
Query 64813 TTTACAGGAAATCTTCCCATAAGGAGGATCGCACATAATCATATCCACACTTCCATCAGG 64872
|| || | | | |||||||| ||||| || |||||||| || || || ||
Sbjct 217 CTTGCACGCTGTTGTGCCATAAGGCGGATCAGTCAATATCATATCAACCGAACCGTCTGG 276
Query 64873 AATCTCTTTCATCCGCTCCAAACAATCGCCCTG 64905
||||||||||| ||||| | ||||| || ||
Sbjct 277 GATCTCTTTCATACGCTCAAGGCAATCTCCGTG 309
>seq434712
Length=477
Score = 91.5 bits (100), Expect = 1e-13
Identities = 177/258 (69%), Gaps = 4/258 (2%)
Strand=Plus/Minus
Query 114727 TTGTGGTTGTTAGGAGATAACTTTACTAAGCCTAAAGAATTTTGGAGGTTATCTGAGTAT 114786
|||||| | ||||| ||| |||| || | ||| || || ||| | ||| || |||
Sbjct 342 TTGTGGATTTTAGGCGATTCCTTTTTTAGGTCTAGTGAGTTCTGGCGATTAGACGAATAT 283
Query 114787 GCTAAAGCTTTCCAACAATTACAGTTATTGATGGGTAACCATTGC-CACACAGGATTGCC 114845
|| || || || ||| || || | || | | || |||||||| | || | | | ||
Sbjct 282 GCAAAGGCATTTCAAAAAGTAAACATAGTCTTAGGAAACCATTGTGCCCATACGCTA-CC 224
Query 114846 CCGTTATGCGTTACAGTTTAAGAATGTAAATGTATTCGGTGTGGTGCAGAAGTTTGGATT 114905
| || ||| | |||||||| || || || ||||| || || || ||| ||||| |
Sbjct 223 AAGATACGCGCTGCAGTTTAACAACGTCAACGTATTTGGCGTAGTACAGCGTTTTGGTGT 164
Query 114906 ATGGTTGACACACGTACCTGTACCAGATTATGAATTGTACAGGGGGAATTGTATACATGG 114965
||| | ||||| || || || || | |||||| | | ||||| || |||||||||||
Sbjct 163 TTGGCTTACACATGTTCCAGTGCCTGTATATGAACTAGATAGGGGCAACTGTATACATGG 104
Query 114966 ACACCTTCACA--ATGAA 114981
|| || |||| |||||
Sbjct 103 CCATCTGCACAGTATGAA 86
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419262302966608
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |