Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_029094.1 Length=131903 Score E Sequences producing significant alignments: (Bits) Value seq461164 369 3e-97 seq522553 183 3e-41 seq519289 152 4e-32 seq520901 141 8e-29 seq517215 120 3e-22 seq434712 91.5 1e-13 >seq461164 Length=583 Score = 369 bits (408), Expect = 3e-97 Identities = 404/531 (76%), Gaps = 11/531 (2%) Strand=Plus/Minus Query 103695 GCAAGTGCGGCGTTATGGGTTTTATTCTTTTGGGTGTTGTTAGTATGAACTGGTCTGAAT 103754 || |||| || | | ||| | | ||||||||| || || |||||| ||||| || | Sbjct 525 GCTAGTGTGGTGCTGTGGACTCTGTTCTTTTGG---TTAATACTATGAATTGGTCAGACT 469 Query 103755 TAGGTAAAAAGGTTGCTGATTTTGCTCCGCTGTTAGGCTCTGTACTTGGTCCTGCTGGTG 103814 ||||||||||||||||||||||||| ||||| ||||| || | | | || || | |||| Sbjct 468 TAGGTAAAAAGGTTGCTGATTTTGCACCGCTTTTAGGGTCAGCATTAGGCCCAGTCGGTG 409 Query 103815 CGGGTGTTGGTGCGCTAATATCGTCTGAGTTTGGCACAGATAACACGCCAGACGCGATTA 103874 |||||||||| ||| |||||||||| |||||||| || || |||||||||||||| |||| Sbjct 408 CGGGTGTTGGCGCGTTAATATCGTCAGAGTTTGGTACTGAAAACACGCCAGACGCTATTA 349 Query 103875 ATAGCTTTTTAGTTGGCAATCCTGAATCGCAAGTGAAGTTAAAAGAAATAGAGTTAACAC 103934 | ||||| | ||||||||| || ||||||| ||| | ||||| ||| |||||| Sbjct 348 ACAGCTTCATTACTGGCAATCCAGAGGCGCAAGTTAAGCTCCGTGAAATTGAGCTAACAC 289 Query 103935 ACAAAACAAGATTGCAGCAAATTAAGCTGGAAACACTACAGGCTGAGCTTGGTGATAAAG 103994 | ||| || | | || ||||||| || ||||| || || |||||| | | || || | Sbjct 288 ATAAATCACAACTTCAAAAAATTAAACTTGAAACTCTGCAAGCTGAGTTAAGCGACAAGG 229 Query 103995 CCAATGCAAGGCAAGCGCACAGCCAAAGTAAAATGCCAGCCTATTTAAG-TGTTGGCTT- 104052 | || |||||||| |||||||| ||||| ||||||||||| |||||||| | | ||||| Sbjct 228 CAAACGCAAGGCAGGCGCACAGACAAAGCAAAATGCCAGCTTATTTAAGCTTTGGGCTTA 169 Query 104053 -AACTGTGCTTATAGCATTGCTAGTTTTCTTGTTG-TTTTACGTTGATGTGCC-TACAGG 104109 || || || | ||| || |||||| || ||||||||||||||||| | | Sbjct 168 CAATATTGATTGGTACTTTG---GTATTCTTGCTGTTTTTACGTTGATGTGCCGGAGGGT 112 Query 104110 AAGTCGCGAGGTTTTGTTTATGTTGCTTGGCGTTGTTGTTAAGGAATGGGGTAGCGCTAT 104169 | |||| || || || |||||| | | |||||||| ||||| || ||||| ||||| || Sbjct 111 ATGTCGTGAAGTCTTATTTATGCTTTTGGGCGTTGTAGTTAAAGAGTGGGGCAGCGCAAT 52 Query 104170 GCAGTTCTGGTTTGGTACAACTCGCAGCAGTGCAGACAAAACAAGATTGAT 104220 ||| ||||||||||| ||||| | || ||||| || ||||| ||||| || Sbjct 51 GCAATTCTGGTTTGGAACAACAAGAAGTAGTGCTGATAAAACTAGATTAAT 1 Score = 125 bits (138), Expect = 6e-24 Identities = 153/206 (74%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 19520 ATCAATCTTGTTTTATCTGCGCTACTGCGTGTTGTGCCAAACCAAAACTGCATAGCACTA 19579 || ||||| |||||||| || ||||| | |||||| |||||||| || ||||| || || Sbjct 1 ATTAATCTAGTTTTATCAGCACTACTTCTTGTTGTTCCAAACCAGAATTGCATTGCGCTG 60 Query 19580 CCCCACTCTTTAACCACAACGCCTAGCAGCATAAATAACACCTCACGGC-TACCTGTAGG 19638 |||||||||||||| |||||||| | ||||||||||| || ||||| | |||| || Sbjct 61 CCCCACTCTTTAACTACAACGCCCAAAAGCATAAATAAGACTTCACGACATACCCTCCGG 120 Query 19639 TACATCGACCCAAAACAACATAAACACTATCAACAT---TATGATTAAAGTTAACCCTAC 19695 ||||| || ||| |||| || | || ||| | || | || || | ||| | Sbjct 121 CACATCAACGTAAA--AACAGCAAGAATACCAAAGTACCAATCAATATTGTAAGCCCAAA 178 Query 19696 ACTTAAATAGACTGGCATTTTACTTT 19721 |||||||| |||||||||| |||| Sbjct 179 GCTTAAATAAGCTGGCATTTTGCTTT 204 >seq522553 Length=510 Score = 183 bits (202), Expect = 3e-41 Identities = 194/253 (77%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 123576 ATGAGTTATACTAAAAGAGAGGATATTAAGCCTCAAAAAGGGAAACAATCCCTTGTTATG 123635 ||||||||| || | ||||||||| || ||| ||||| ||| || || ||| Sbjct 258 ATGAGTTATGAGAAGAAGGAGGATATTCGCCCCCAAGCGGGGAAGCAACTCCAAGTAATG 317 Query 123636 AAAATGATAAGAGACCAAGAAGTAGATTTCATGTTATGTGGAGGG-GCACGTGCAGGGGG 123694 | ||||| || ||||||||||||| |||||| | ||||| || || ||||| || || Sbjct 318 CAGATGATCAGGAACCAAGAAGTAGACTTCATGCTCTGTGGTGGATGCTCGTGC-GGTGG 376 Query 123695 TAAGAGTGAGCTCTTATCTATGATGCCCTTACTTTTTGCACACGATAAACAATACCGTGG 123754 ||| ||||| || | || ||||||||| |||| ||||| ||||||||||| |||||||| Sbjct 377 TAAAAGTGAACTACTCTCCATGATGCCCCTACTCTTTGCTCACGATAAACAGTACCGTGG 436 Query 123755 TATATTCTTCCGTAAATCGTTCCAAGAAATTATGGGAGCTAATGGTCTTTGGCAAAAAGC 123814 |||||||||| | | | || | | ||||| |||||||| ||||| | ||||| || || Sbjct 437 TATATTCTTCAGAAGACAGTACGATGAAATAATGGGAGCCAATGGCTTGTGGCAGAAGGC 496 Query 123815 TCAGAACATGTAT 123827 |||||||||||| Sbjct 497 ACAGAACATGTAT 509 >seq519289 Length=421 Score = 152 bits (168), Expect = 4e-32 Identities = 154/199 (77%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 64196 GTCCACTCCATACCTTCGTACTCATGTCCTTTCTTCTCACAGTGCCCCATTTCTATACCA 64255 ||||| ||||| ||||| |||| ||| |||||||||||||| ||||| || ||||| Sbjct 138 GTCCAGTCCATGCCTTCATACTTATGACCTTTCTTCTCACATACTCCCATCTCAATACCG 197 Query 64256 ATAGCATTTCTGTTGAGGTTGTTTGCTGCCTTGATAGTAGACCCACTACCCATTGTAAAA 64315 ||||| || | ||| |||||| | || || ||| |||| ||||||||||| || ||| Sbjct 198 ATAGCTTTACGGTTCAGGTTGGTAGCAGCTCTGAATGTAGCACCACTACCCATGGTGAAA 257 Query 64316 TCTAAGATAGTTTCACCTCCATTAGTGTAGGTTTTTATTAGGTACTCCATTAGAGCAACT 64375 |||| || ||| |||||| ||| |||||| || || || | || |||||| || | ||| Sbjct 258 TCTAGGACAGTCTCACCTTCATCAGTGTATGTCTTAATCATGT-CTCCATGAGTTCCACT 316 Query 64376 GGTTTTTGTGTTGGATGTA 64394 || |||||||| || |||| Sbjct 317 GGCTTTTGTGTAGGGTGTA 335 >seq520901 Length=491 Score = 141 bits (156), Expect = 8e-29 Identities = 137/176 (78%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 17485 AAGTGTACGAAGTGCGTAAAACTTCTGATGATTCATTAGCTACCATTTACAGTGATGCCG 17544 |||| || |||||||||||| || |||| | ||||||| || |||||| |||| | Sbjct 94 AAGTTTATGAAGTGCGTAAAGTGTCAGATGGTACATTAGCGACTATTTACTCGAATGCGG 153 Query 17545 CTGGTACGGCTGAGATCGTGCAGAATGGTACGAGTAACGTATCGGGTAGTGATGGTGTTG 17604 | ||||| || |||| ||||| ||||||| ||||||||||| | ||||| ||| |||| Sbjct 154 CAAGTACGACTAAGATTGTGCAAAATGGTAAAAGTAACGTATCTGATAGTGCTGGCGTTG 213 Query 17605 TTGAGTTTTTTATTGCTGAGGGGGATTATTATGTTGAGGTTGGTGGGGTTAGTGCT 17660 ||||||||| |||||| || || |||||| | ||| || | || |||||||||| Sbjct 214 TTGAGTTTTATATTGCAGATGGCGATTATAAAGTTACGGCTAATGCGGTTAGTGCT 269 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/189 (71%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 106357 AACAACCCCATCACTACCCGATTTATTATCAGTACCATTCTGCACAATCTCAGTCGTACC 106416 |||||| ||| ||||| | ||| ||| ||||||| |||||||||| |||||||| Sbjct 215 AACAACGCCAGCACTATCAGATACGTTACTTTTACCATTTTGCACAATCTTAGTCGTACT 156 Query 106417 AGCTGCATCACTGTATATAGTTGCTAATGAGTCATCGGAAGTCTTACGTACTTCGTACAC 106476 || |||| ||| ||||| ||||||| |||| || ||||| ||||| || || Sbjct 155 TGCCGCATTCGAGTAAATAGTCGCTAATGTACCATCTGACACTTTACGCACTTCATAAAC 96 Query 106477 TTCACCAGCGTCAACCGTGCGAGTTTGTATTTCAGTTAATCCGCCATCAGTAGGCGATTG 106536 || | ||| | || || || | |||| ||||||||| |||||| || | || Sbjct 95 TTGGCTAGCAGTTAGAGTACGGGTGTTAATTTTAGTTAATCC---ATCAGTTGGTGCCTG 39 Query 106537 AAATATTTT 106545 ||||||||| Sbjct 38 AAATATTTT 30 >seq517215 Length=535 Score = 120 bits (132), Expect = 3e-22 Identities = 192/273 (70%), Gaps = 11/273 (4%) Strand=Plus/Plus Query 64637 AAGTGTCCTGTTCCTTTAGGTTTCTTCCAAACCCAGTCATATTTAAACATTTTCAAATTA 64696 |||| ||||| |||| ||| | |||| |||| |||||||||||| |||| ||| Sbjct 44 AAGTTTCCTG---CTTTTTCTTTTTCCCAATACCAGCAATATTTAAACATCTTCATATT- 99 Query 64697 CTTGAAACCAACACGC----TGGTAAACGGTTGCGCGGCAGTTATAACAATTGCCCCGTT 64752 |||| |||| | || | || || || || ||||| ||||| || || || || Sbjct 100 --TGAA-CCAATAAGCACTGTAGTGAAAGGCTGACTAGCAGTCATAACTATAGCGCCATT 156 Query 64753 AGGCTTAATGATTCGCTTCAACTGCTCCCACATAGGTTCGAGTGGTATTACACTGTCCCA 64812 |||||| || ||||| || ||||| |||||||| ||||| || || || || ||||| Sbjct 157 AGGCTTTATAATTCGTTTTAACTGTTCCCACATCGGTTCAAGAGGAATAACTGAATCCCA 216 Query 64813 TTTACAGGAAATCTTCCCATAAGGAGGATCGCACATAATCATATCCACACTTCCATCAGG 64872 || || | | | |||||||| ||||| || |||||||| || || || || Sbjct 217 CTTGCACGCTGTTGTGCCATAAGGCGGATCAGTCAATATCATATCAACCGAACCGTCTGG 276 Query 64873 AATCTCTTTCATCCGCTCCAAACAATCGCCCTG 64905 ||||||||||| ||||| | ||||| || || Sbjct 277 GATCTCTTTCATACGCTCAAGGCAATCTCCGTG 309 >seq434712 Length=477 Score = 91.5 bits (100), Expect = 1e-13 Identities = 177/258 (69%), Gaps = 4/258 (2%) Strand=Plus/Minus Query 114727 TTGTGGTTGTTAGGAGATAACTTTACTAAGCCTAAAGAATTTTGGAGGTTATCTGAGTAT 114786 |||||| | ||||| ||| |||| || | ||| || || ||| | ||| || ||| Sbjct 342 TTGTGGATTTTAGGCGATTCCTTTTTTAGGTCTAGTGAGTTCTGGCGATTAGACGAATAT 283 Query 114787 GCTAAAGCTTTCCAACAATTACAGTTATTGATGGGTAACCATTGC-CACACAGGATTGCC 114845 || || || || ||| || || | || | | || |||||||| | || | | | || Sbjct 282 GCAAAGGCATTTCAAAAAGTAAACATAGTCTTAGGAAACCATTGTGCCCATACGCTA-CC 224 Query 114846 CCGTTATGCGTTACAGTTTAAGAATGTAAATGTATTCGGTGTGGTGCAGAAGTTTGGATT 114905 | || ||| | |||||||| || || || ||||| || || || ||| ||||| | Sbjct 223 AAGATACGCGCTGCAGTTTAACAACGTCAACGTATTTGGCGTAGTACAGCGTTTTGGTGT 164 Query 114906 ATGGTTGACACACGTACCTGTACCAGATTATGAATTGTACAGGGGGAATTGTATACATGG 114965 ||| | ||||| || || || || | |||||| | | ||||| || ||||||||||| Sbjct 163 TTGGCTTACACATGTTCCAGTGCCTGTATATGAACTAGATAGGGGCAACTGTATACATGG 104 Query 114966 ACACCTTCACA--ATGAA 114981 || || |||| ||||| Sbjct 103 CCATCTGCACAGTATGAA 86 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419262302966608