Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_029100.1 Length=33399 Score E Sequences producing significant alignments: (Bits) Value seq260826 170 4e-38 seq521789 140 7e-29 seq518294 132 1e-26 seq501628 116 8e-22 seq520901 96.9 7e-16 >seq260826 Length=726 Score = 170 bits (188), Expect = 4e-38 Identities = 383/560 (68%), Gaps = 34/560 (6%) Strand=Plus/Minus Query 24228 GTCAATGACTTGCTTAAAAAGTTAGATCGTAAACGTATTGACCTAGCCAAGGATTATAAG 24287 || || ||||| ||||||||| |||| || || ||||| |||||| | ||| | ||||| Sbjct 725 GTTAACGACTTACTTAAAAAGCTAGACCGCAAGCGTATCGACCTATCAAAGCAATATAA- 667 Query 24288 AAAGCTG-TTGAAGCAGAAGCCAAGGAAGTGCGTA--CA-CGACTTGAAAAGGCAAACAG 24343 | || | ||||| ||||||| || ||| | || || ||||||||||| ||||||| Sbjct 666 AGCGCAGGTTGAATCAGAAGCTAAAGAAAT---TAAGCATCGACTTGAAAACGCAAACAA 610 Query 24344 TCCATTTACAGCATTGATTGATGAATGGAATG-AGAAACGCGCTA--AAATCCTAGCAGA 24400 || ||||| || ||||| || ||||||| ||| |||| | | || | || Sbjct 609 GCCGTTTACGCTTTTAATTGACGAGTGGAATGTAGA---GCGCAAGCGTGTACTCGATGA 553 Query 24401 AGAAAAGCGCATCCAAGCTGAGAAAGAATTGGCCGAGCAAATCGAGCGTGACCATGAAGA 24460 |||||||||| | |||||||| | ||| | | ||||| || ||||| || ||||| Sbjct 552 AGAAAAGCGCCTACAAGCTGAAATAGAGCTACAGGCACAAATTGAACGTGATCACGAAGA 493 Query 24461 AGCGTTGCAACTTAATCGCCTGTGGGATTTAGAAGCAA-AAGAGCGCGAAGC----GC-- 24513 |||||||||||||||| || ||||| || ||||| |||||||||||| || Sbjct 492 AGCGTTGCAACTTAATAAACTTTGGGA-ATACGAGCAATTAGAGCGCGAAGCTAATGCTG 434 Query 24514 AAAGAGAAGCTGAGAAGCAAGCTCAGATTCAGCGTGAAAAAGATATTGCTGAGCAAGCAC 24573 ||| ||| || |||||| ||| |||| ||||| | || || |||||||| Sbjct 433 AAAAAGAGCGCCAGCAGCAAG--CAG----AGCGCGAAAAGCAAATAGCCGAGCAAGCGG 380 Query 24574 GAAAACAAGCTTTGATTGATGCTGAAAACGCCAAATTAGCAGAGCAGCAACGCATAGAAG 24633 ||| ||||| || ||||||||||| || || | |||| || || || ||| Sbjct 379 CAAAGCAAGCGTTAATTGATGCTGAGAATGCACGACAAGCACAGTTACAGCGTGAAGAGC 320 Query 24634 ATGA---GCGAAAGCAGCGAGAAGCTAACAAGGCTTATATGGCTGGCGTAAATAACTCAA 24690 | || || || |||| || ||| | | || | | ||| | || || || ||| Sbjct 319 ACGACAGGCTAA---AGCGTGAGGCTGATACAGCGCACAAGGCGAGAGTTAACAATGCAA 263 Query 24691 TTCTTGCAGTGCTTATGCAAAACGGCATTAGCGAGCAAGATGGTAAAACAGTAATTAAAT 24750 | ||||| || | |||| ||||||||||| | |||| || || || || || Sbjct 262 TACTTGCCACACTGGTTGAAAATGGCATTAGCGAAGATGATGCAAAGACCGTTATCAAGC 203 Query 24751 TGGCTGCAAAAGGTCAGCTA 24770 |||||| || || ||||| Sbjct 202 TGGCTGTAACCGGCAAGCTA 183 >seq521789 Length=232 Score = 140 bits (154), Expect = 7e-29 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 15244 GCTTGCACTGGTTTCTAACTGTGTTAACGCTCTCACCGTCCTGTTTAGCTATTTGAGAAT 15303 |||||||||| || ||| || ||| |||||||||| || || |||| || | || Sbjct 3 GCTTGCACTGATTCTCAACAGTTAAAACATTCTCACCGTCTTGCTTTGCTACCTGTGCAT 62 Query 15304 ACCAAACGTAGATTTGTGCGTTAGCTGATAGTGTGCGCTTTTCAGACCATGGCTCAATGG 15363 ||||||||| ||||| || || || | ||||||||| || |||| ||||| | | Sbjct 63 ACCAAACGTGAATTTGAGCATTGGCGCTAATTGTGCGCTTATCGCACCAGGGCTCGACAG 122 Query 15364 TGATTTTGAGCGCTCCGCTATGCCTGAAAAGCTCTTGCATTAGCTGAATGACAACCTTTG 15423 | | ||| ||| ||||||||| |||| ||||||||||||||||| ||||| || | | Sbjct 123 TCACTTTAAGCTGTCCGCTATGATTGAATAGCTCTTGCATTAGCTGGATGACTACTTGCG 182 Query 15424 CGTTTGTGCCGATAAATTTAATCTGCTTT-ACTAGA 15458 ||| ||||| || |||||||| || ||| |||||| Sbjct 183 TGTTAGTGCCTATGAATTTAAT-TGATTTAACTAGA 217 >seq518294 Length=326 Score = 132 bits (146), Expect = 1e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 23758 CGAGTGGATGAGTAGTATTTTAACCCTACCAATGACAAAACAAGATCCACAAGCGGCTGG 23817 ||||||||||| || | || | | || ||| || |||||||| ||||||||||| Sbjct 326 CGAGTGGATGAAAAGCGTCTTGATGTTGCCTATGGTTAAGCAAGATCCTCAAGCGGCTGG 267 Query 23818 CTCTGCCATCACATACGCAAGACGCTATGCTTTACAAGCTATTGCTGGTATTCCTGCTGA 23877 || || || |||||||| ||||| ||||||||||||||||| || || || || || || Sbjct 266 TTCAGCTATAACATACGCTAGACGGTATGCTTTACAAGCTATCGCAGGAATACCAGCGGA 207 Query 23878 GGATGATGACGGTAATGCAGCAAGCCAAAGTAAGCCAGCAA 23918 ||||||||||||||| |||| ||||||| |||||||| Sbjct 206 AGATGATGACGGTAATTCAGCTAGCCAAAAAGCGCCAGCAA 166 >seq501628 Length=456 Score = 116 bits (128), Expect = 8e-22 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 23497 ATTTTAAGTGCGAGGTCTTAGTATGCAAAAGTCAGAATCAATCAAAGAGCTTGCCACCGC 23556 || ||| ||||||| | ||| ||| ||| ||||||||||||||| | |||| || Sbjct 318 ATATTAGATGCGAGGGCATAGCATGGAAATGTCAGAATCAATCAAGCATATTGCTGAGGC 377 Query 23557 TTTAAATAAAGCGCAAGCAGAAATGAGTGGCGCAAAGAAAGGTGCTAATAATCCATTCTT 23616 ||||||||||| || || |||||||| || |||||||| || ||||| || |||||||| Sbjct 378 GTTAAATAAAGCTCAGGCTGAAATGAGCGGAGCAAAGAAGGGGGCTAAAAACCCATTCTT 437 Query 23617 TAAAAGCAAGTATGCAGAC 23635 |||||||| || || ||| Sbjct 438 CAAAAGCAATTACGCGGAC 456 >seq520901 Length=491 Score = 96.9 bits (106), Expect = 7e-16 Identities = 154/219 (70%), Gaps = 9/219 (4%) Strand=Plus/Minus Query 29656 ATAATCACCGTTGGAAATATAAAACTCAACAACACCATCACTTCCCGAT---TTATTGTC 29712 |||||| || | | |||||||||||||||||| ||| |||| | ||| ||| | | Sbjct 242 ATAATCGCCATCTGCAATATAAAACTCAACAACGCCAGCACTATCAGATACGTTACTTT- 184 Query 29713 AGTGCCATCTTGCAAAATCTCAGTCGTACCGGCTGCATCACTGTAAATAGTAGCTAATGA 29772 | |||| ||||| ||||| |||||||| || |||| ||||||||| ||||||| Sbjct 183 --TACCATTTTGCACAATCTTAGTCGTACTTGCCGCATTCGAGTAAATAGTCGCTAATGT 126 Query 29773 ATCGTCAGAAGTTTTGCGTACTTCGTACACTTCACCCGCGTCAACTGTACGAGTTTGTAT 29832 | | || || ||| || ||||| || |||| | || | ||||| || | || Sbjct 125 ACCATCTGACACTTTACGCACTTCATAAACTTGGCTAGCAGTTAGAGTACGGGTGTTAAT 66 Query 29833 TTCAGTTAATCCGCCATCGGTAGGTGACTGGAAAATCTT 29871 || ||||||| ||||| || |||| ||| || || || Sbjct 65 TTTAGTTAAT---CCATCAGTTGGTGCCTGAAATATTTT 30 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 106089011655564