Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_029100.1
Length=33399
Score E
Sequences producing significant alignments: (Bits) Value
seq260826 170 4e-38
seq521789 140 7e-29
seq518294 132 1e-26
seq501628 116 8e-22
seq520901 96.9 7e-16
>seq260826
Length=726
Score = 170 bits (188), Expect = 4e-38
Identities = 383/560 (68%), Gaps = 34/560 (6%)
Strand=Plus/Minus
Query 24228 GTCAATGACTTGCTTAAAAAGTTAGATCGTAAACGTATTGACCTAGCCAAGGATTATAAG 24287
|| || ||||| ||||||||| |||| || || ||||| |||||| | ||| | |||||
Sbjct 725 GTTAACGACTTACTTAAAAAGCTAGACCGCAAGCGTATCGACCTATCAAAGCAATATAA- 667
Query 24288 AAAGCTG-TTGAAGCAGAAGCCAAGGAAGTGCGTA--CA-CGACTTGAAAAGGCAAACAG 24343
| || | ||||| ||||||| || ||| | || || ||||||||||| |||||||
Sbjct 666 AGCGCAGGTTGAATCAGAAGCTAAAGAAAT---TAAGCATCGACTTGAAAACGCAAACAA 610
Query 24344 TCCATTTACAGCATTGATTGATGAATGGAATG-AGAAACGCGCTA--AAATCCTAGCAGA 24400
|| ||||| || ||||| || ||||||| ||| |||| | | || | ||
Sbjct 609 GCCGTTTACGCTTTTAATTGACGAGTGGAATGTAGA---GCGCAAGCGTGTACTCGATGA 553
Query 24401 AGAAAAGCGCATCCAAGCTGAGAAAGAATTGGCCGAGCAAATCGAGCGTGACCATGAAGA 24460
|||||||||| | |||||||| | ||| | | ||||| || ||||| || |||||
Sbjct 552 AGAAAAGCGCCTACAAGCTGAAATAGAGCTACAGGCACAAATTGAACGTGATCACGAAGA 493
Query 24461 AGCGTTGCAACTTAATCGCCTGTGGGATTTAGAAGCAA-AAGAGCGCGAAGC----GC-- 24513
|||||||||||||||| || ||||| || ||||| |||||||||||| ||
Sbjct 492 AGCGTTGCAACTTAATAAACTTTGGGA-ATACGAGCAATTAGAGCGCGAAGCTAATGCTG 434
Query 24514 AAAGAGAAGCTGAGAAGCAAGCTCAGATTCAGCGTGAAAAAGATATTGCTGAGCAAGCAC 24573
||| ||| || |||||| ||| |||| ||||| | || || ||||||||
Sbjct 433 AAAAAGAGCGCCAGCAGCAAG--CAG----AGCGCGAAAAGCAAATAGCCGAGCAAGCGG 380
Query 24574 GAAAACAAGCTTTGATTGATGCTGAAAACGCCAAATTAGCAGAGCAGCAACGCATAGAAG 24633
||| ||||| || ||||||||||| || || | |||| || || || |||
Sbjct 379 CAAAGCAAGCGTTAATTGATGCTGAGAATGCACGACAAGCACAGTTACAGCGTGAAGAGC 320
Query 24634 ATGA---GCGAAAGCAGCGAGAAGCTAACAAGGCTTATATGGCTGGCGTAAATAACTCAA 24690
| || || || |||| || ||| | | || | | ||| | || || || |||
Sbjct 319 ACGACAGGCTAA---AGCGTGAGGCTGATACAGCGCACAAGGCGAGAGTTAACAATGCAA 263
Query 24691 TTCTTGCAGTGCTTATGCAAAACGGCATTAGCGAGCAAGATGGTAAAACAGTAATTAAAT 24750
| ||||| || | |||| ||||||||||| | |||| || || || || ||
Sbjct 262 TACTTGCCACACTGGTTGAAAATGGCATTAGCGAAGATGATGCAAAGACCGTTATCAAGC 203
Query 24751 TGGCTGCAAAAGGTCAGCTA 24770
|||||| || || |||||
Sbjct 202 TGGCTGTAACCGGCAAGCTA 183
>seq521789
Length=232
Score = 140 bits (154), Expect = 7e-29
Identities = 162/216 (75%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 15244 GCTTGCACTGGTTTCTAACTGTGTTAACGCTCTCACCGTCCTGTTTAGCTATTTGAGAAT 15303
|||||||||| || ||| || ||| |||||||||| || || |||| || | ||
Sbjct 3 GCTTGCACTGATTCTCAACAGTTAAAACATTCTCACCGTCTTGCTTTGCTACCTGTGCAT 62
Query 15304 ACCAAACGTAGATTTGTGCGTTAGCTGATAGTGTGCGCTTTTCAGACCATGGCTCAATGG 15363
||||||||| ||||| || || || | ||||||||| || |||| ||||| | |
Sbjct 63 ACCAAACGTGAATTTGAGCATTGGCGCTAATTGTGCGCTTATCGCACCAGGGCTCGACAG 122
Query 15364 TGATTTTGAGCGCTCCGCTATGCCTGAAAAGCTCTTGCATTAGCTGAATGACAACCTTTG 15423
| | ||| ||| ||||||||| |||| ||||||||||||||||| ||||| || | |
Sbjct 123 TCACTTTAAGCTGTCCGCTATGATTGAATAGCTCTTGCATTAGCTGGATGACTACTTGCG 182
Query 15424 CGTTTGTGCCGATAAATTTAATCTGCTTT-ACTAGA 15458
||| ||||| || |||||||| || ||| ||||||
Sbjct 183 TGTTAGTGCCTATGAATTTAAT-TGATTTAACTAGA 217
>seq518294
Length=326
Score = 132 bits (146), Expect = 1e-26
Identities = 126/161 (78%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 23758 CGAGTGGATGAGTAGTATTTTAACCCTACCAATGACAAAACAAGATCCACAAGCGGCTGG 23817
||||||||||| || | || | | || ||| || |||||||| |||||||||||
Sbjct 326 CGAGTGGATGAAAAGCGTCTTGATGTTGCCTATGGTTAAGCAAGATCCTCAAGCGGCTGG 267
Query 23818 CTCTGCCATCACATACGCAAGACGCTATGCTTTACAAGCTATTGCTGGTATTCCTGCTGA 23877
|| || || |||||||| ||||| ||||||||||||||||| || || || || || ||
Sbjct 266 TTCAGCTATAACATACGCTAGACGGTATGCTTTACAAGCTATCGCAGGAATACCAGCGGA 207
Query 23878 GGATGATGACGGTAATGCAGCAAGCCAAAGTAAGCCAGCAA 23918
||||||||||||||| |||| ||||||| ||||||||
Sbjct 206 AGATGATGACGGTAATTCAGCTAGCCAAAAAGCGCCAGCAA 166
>seq501628
Length=456
Score = 116 bits (128), Expect = 8e-22
Identities = 109/139 (78%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 23497 ATTTTAAGTGCGAGGTCTTAGTATGCAAAAGTCAGAATCAATCAAAGAGCTTGCCACCGC 23556
|| ||| ||||||| | ||| ||| ||| ||||||||||||||| | |||| ||
Sbjct 318 ATATTAGATGCGAGGGCATAGCATGGAAATGTCAGAATCAATCAAGCATATTGCTGAGGC 377
Query 23557 TTTAAATAAAGCGCAAGCAGAAATGAGTGGCGCAAAGAAAGGTGCTAATAATCCATTCTT 23616
||||||||||| || || |||||||| || |||||||| || ||||| || ||||||||
Sbjct 378 GTTAAATAAAGCTCAGGCTGAAATGAGCGGAGCAAAGAAGGGGGCTAAAAACCCATTCTT 437
Query 23617 TAAAAGCAAGTATGCAGAC 23635
|||||||| || || |||
Sbjct 438 CAAAAGCAATTACGCGGAC 456
>seq520901
Length=491
Score = 96.9 bits (106), Expect = 7e-16
Identities = 154/219 (70%), Gaps = 9/219 (4%)
Strand=Plus/Minus
Query 29656 ATAATCACCGTTGGAAATATAAAACTCAACAACACCATCACTTCCCGAT---TTATTGTC 29712
|||||| || | | |||||||||||||||||| ||| |||| | ||| ||| | |
Sbjct 242 ATAATCGCCATCTGCAATATAAAACTCAACAACGCCAGCACTATCAGATACGTTACTTT- 184
Query 29713 AGTGCCATCTTGCAAAATCTCAGTCGTACCGGCTGCATCACTGTAAATAGTAGCTAATGA 29772
| |||| ||||| ||||| |||||||| || |||| ||||||||| |||||||
Sbjct 183 --TACCATTTTGCACAATCTTAGTCGTACTTGCCGCATTCGAGTAAATAGTCGCTAATGT 126
Query 29773 ATCGTCAGAAGTTTTGCGTACTTCGTACACTTCACCCGCGTCAACTGTACGAGTTTGTAT 29832
| | || || ||| || ||||| || |||| | || | ||||| || | ||
Sbjct 125 ACCATCTGACACTTTACGCACTTCATAAACTTGGCTAGCAGTTAGAGTACGGGTGTTAAT 66
Query 29833 TTCAGTTAATCCGCCATCGGTAGGTGACTGGAAAATCTT 29871
|| ||||||| ||||| || |||| ||| || || ||
Sbjct 65 TTTAGTTAAT---CCATCAGTTGGTGCCTGAAATATTTT 30
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 106089011655564
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |