Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_029101.1 Length=72192 Score E Sequences producing significant alignments: (Bits) Value seq486019 345 2e-90 seq488807 203 1e-47 seq255804 187 1e-42 seq505100 109 3e-19 seq523594 105 3e-18 seq469180 104 1e-17 seq513583 100 1e-16 >seq486019 Length=823 Score = 345 bits (382), Expect = 2e-90 Identities = 478/665 (72%), Gaps = 3/665 (0%) Strand=Plus/Minus Query 8862 TGTACATTGCACTGTACGGTGAGCTTCCTGGTTTCGGTAAGGTAGACCTTGCTCTGTATG 8921 ||||||| || |||||||| | || || || ||||| || | | |||||||||| Sbjct 821 TGTACATAGCTTGTTACGGTGACATCCCCGGGTTTGGTAAAGTTCCCTTGGCTCTGTATG 762 Query 8922 TGTCGGACTCCATCGACAACGGTGTGAAGAACATGCGGAAGAACCTGGAGTTCCGTTGGG 8981 | || || || || |||||||| ||||||||||| |||||| ||||||||||||||| Sbjct 761 TTTCAGATAGTATAGAGAACGGTGTTAAGAACATGCGTAAGAACTTGGAGTTCCGTTGGG 702 Query 8982 AGAACTCTGAGTTCTTGAGGAAGTACATCCCTCAGACCAGCTTCACTGATATCCGTTGGA 9041 | ||||| || || || ||||| | ||| | || || ||||||||||| || ||| Sbjct 701 AAAACTCAGAATTTTTACTTAAGTATGTACCT-ACACTAGGTTCACTGATATACGCTGGG 643 Query 9042 AGTTCACCAACCTGGATGGGAAGGTGTTCATCGTCAAAGGCTACGGTGCCAAGACTGGTG 9101 | || | ||| | ||||| || || ||||| ||||| || || || ||||| |||| Sbjct 642 AATTTAATAACATTGATGGTAACCGATTTATCGTAAAAGGTTATGGCGCAAAGACCGGTG 583 Query 9102 TCCGTGGTGCGAAGGAGATGGGTAAACGTCCGCAGCTTGCGGTACTGGATGACTTGGTTT 9161 | |||||||| || ||||||||| ||||| |||||| ||||| |||||||| | | Sbjct 582 TACGTGGTGCTAAAGAGATGGGTGTTCGTCCAGTGCTTGCTGTACTAGATGACTTAATAT 523 Query 9162 CGGACGAAGATGCTCGCTCGCCCACTGTCATCGCAGCCATCGAGGACACGGTGTACAAGG 9221 |||| |||||||| | || | || || || | || | || || || |||||||||| Sbjct 522 CGGATGAAGATGCGAGGTCAGCTACAGTTATTTCTGCTGTAGAAGATACAGTGTACAAGG 463 Query 9222 CAGTGGACTATGCACTGCACCCGAAGAAGAAC-ATGATCATCTGGTCGGGTACACCGTTC 9280 | | ||||| ||| | |||| || | | | | | | |||||||| ||||| || || Sbjct 462 CTATTGACTACGCATTAGACCC-AATACGCTCTAAGGTAATCTGGTCAGGTACTCCCTTT 404 Query 9281 AACGCGAAGGATCCATTGTACAAAGCAGTGGAGTCTGGTGCTTGGAAGGTCAACGTCTAC 9340 ||| || |||||||| ||||||||||| ||||||||||||||| || ||||| ||| Sbjct 403 AACTCGCGTGATCCATTATACAAAGCAGTTGAGTCTGGTGCTTGGGCAGTTAACGTGTAC 344 Query 9341 CCGGTATGTGAGCGGTTCCCCTGCTCGCGGGAAGAGTTCCGTGGTGCATGGCCTGACCGA 9400 || || |||| || || || | |||| || | ||||| |||||||| || Sbjct 343 CCTGTGTGTGCTAATTTTCCTTGTGAAGAGAAAGACTTTAGAGGTGCGTGGCCTGATCGT 284 Query 9401 TTCACCTACGACTTCGTGTTGCAGAAGTACACCCTGGCCAAGAAGGCAGGGAAGATCGAG 9460 ||| | || | || || || | || ||||| || |||||||| ||| | || Sbjct 283 TTCTCATATCAATTTGTTTTAGACAAATACACTAAAGCTTTTAAGGCAGGTAAGGTGGAT 224 Query 9461 ACGTTCAACCAAGAGCTTATGCTCCAGATCATGTCTGACGAAGACCGGCTCATCCAGGAT 9520 || || ||||||||||||||| | | |||||||| ||||| || || || || || ||| Sbjct 223 ACATTTAACCAAGAGCTTATGTTACGAATCATGTCAGACGAGGATCGTCTAATTCAAGAT 164 Query 9521 GGTGA 9525 |||| Sbjct 163 TGTGA 159 >seq488807 Length=774 Score = 203 bits (224), Expect = 1e-47 Identities = 354/505 (70%), Gaps = 14/505 (3%) Strand=Plus/Plus Query 9209 ACGGTGTACAAGGCAGTGGACTATGCACTGCACCCGAAGAAGAACATGATCATCTGGTCG 9268 || || || || |||||||| || ||| |||| || | ||| | || |||||||| Sbjct 1 ACAGTTTATAAAGCAGTGGATTACGCATTGCATCCTACCAAGTCTAAAATAATCTGGTCA 60 Query 9269 GGTACACCGTTCAACGCGAAGGATCCATTGTACAAAGCAGTGGAGTCTGGTGCTTGGAAG 9328 ||||| ||||| ||||| || ||||||||||||||||| ||||| || |||||| | Sbjct 61 GGTACTCCGTTTAACGCCCGTGACCCATTGTACAAAGCAGTTGAGTCAGGAGCTTGGTAC 120 Query 9329 GTCAACGTCTACCCGGTATGTGAGCGGTTCCCCTGCTCGCGGGAAGAGTTCCGTGGTGCA 9388 || || || ||||| || |||||| || || || || | ||||||||| || || Sbjct 121 GTAAATGTGTACCCTGTGTGTGAGAAATTTCCTTGTACGAGAGAAGAGTTCAAAGGCTCA 180 Query 9389 TGGCCTGACCGATTCACCTACGACTTCGTGTTGCAGAAGTACACCCTGGCCAAGAAGGCA 9448 |||||||| || ||||| || |||| || || || | |||||| || || ||| Sbjct 181 TGGCCTGATCGCTTCACGTATGACTATGTAATGAAGCAATACACCAAAGCTGTTAAAGCA 240 Query 9449 GGGAAGATCGAGACGTTCAACCAAGAGCTTATGCTCCAGATCATGTCTGACGAAGACCGG 9508 || ||| | || | || ||||||||| | ||||| || ||||| || |||||| | Sbjct 241 GGTAAGGTGGATTCTTTTAACCAAGAGTTGATGCTAAGAATTATGTCAGAAGAAGACAGA 300 Query 9509 CTCATCCAGGATGGTGAGGTGGCTTGGTACATGCGACGCAACG---TGCTGGACA-ACAA 9564 | || | ||| ||||| | ||||||| || ||| || | | || | | || Sbjct 301 TTAATTAAAGATAGTGAGATTAATTGGTAC--GC-ACGTAATGCACTTCTTAAGAGTAAA 357 Query 9565 GAAGCGGTACAACTTCTACATCACCACTGACTTCGCTACCTCTGCGAAGAAGGCCAGTGA 9624 || || |||||||||||||||||| || || || || ||||||| || |||| || || Sbjct 358 GACGC-GTACAACTTCTACATCACTACGGATTTTGCAACCTCTGAAAAAGAGGCTAGCGA 416 Query 9625 CTTCAGCATCATCAGTGTCTGG--GCTTACTCCCACAACG-AGGACTGGCTGTGGGTAGA 9681 ||| ||| | || ||| ||| ||||| | || | | | | ||| | |||||||| Sbjct 417 CTTTAGCGTAATATCTGTATGGGCGCTTA-GCTCAGATGGTACG--TGGTTCTGGGTAGA 473 Query 9682 CGGTATCTGTGAACGCCAGGACATG 9706 |||||| || || | || |||||| Sbjct 474 CGGTATTTGCGAGCAACAAGACATG 498 >seq255804 Length=3791 Score = 187 bits (206), Expect = 1e-42 Identities = 641/984 (65%), Gaps = 29/984 (3%) Strand=Plus/Minus Query 8684 TTTGCCTTGCAGTTCGTTGAC-TTCATCAAGATGGTCAACGGCAACGAAGGGGAAGAGAA 8742 ||||| ||| ||||| ||||| || || ||| | || || || || || || ||||| Sbjct 2983 TTTGCATTGGAGTTC-TTGACGTTTATTAAGCTAGTTAATGGTGGTGAGGGTGAGGAGAA 2925 Query 8743 CAAGACACCAGTACTTCACCTGCGTATGCTTGACCAGATTGGATC-TGG--TCAGACCCG 8799 | |||| || ||||| | ||| | || || || ||| ||| | ||| || Sbjct 2924 CGTATCACCTGTTATTCACTTAAAGATGTTAGATAAG-TTAGATGGTGGATTAAGAAACG 2866 Query 8800 GATCGCCAACATGGTGTTCCGTGGTGCAGCGAAGACCACCGTGATGGGTGAGTACCTGTT 8859 | || |||||| | || |||||||||| ||||| || | |||| ||||||||| | Sbjct 2865 TA--GCTAACATGATCTTTCGTGGTGCAGGTAAGACTACACTAATGGCTGAGTACCTTAT 2808 Query 8860 CCTGTACATT-GCACTGTACGGTGAGCTTCCTGGTTTCGGTAAGGTAGACCTTGCTCTGT 8918 | | || || || ||||||| | || || |||||||| | | | |||| Sbjct 2807 CTTATATCTTAGCGGTGTACGGCAGAATGCCGTCCTTTGGTAAGGTTAAATTAGTGCTGT 2748 Query 8919 ATGTGTCGGACTCCATCGACAACGGTGTGAAGAACATGCGGAAGAACCTGGAGTTCCGTT 8978 |||| || || || || |||||| | ||| ||| | |||||| | |||| |||| Sbjct 2747 ATGTATCAGATAGTATTGATAACGGTATTAAGTCAATGAGAAAGAACTTAGAGTCTCGTT 2688 Query 8979 GGGAGAACTCTGAGTTCTTGAGGAAGTACATCCCTCA-----GACCA--GCTTCACTGAT 9031 |||||| ||||||||| |||||| | ||| | || | ||| ||| ||| Sbjct 2687 GGGAGAGTAGTGAGTTCTTACAGAAGTATCTACCTAAAGAAGGATTAAAGCT-CACAGAT 2629 Query 9032 ATCCGTTGGAAGTTCACCAACCTGGATGGGAAGGTGTTCATCGTCAAAGGCTACGGTGCC 9091 || | ||| |||| | || | |||| | ||| | || || || || |||||| Sbjct 2628 ATTAGGTGGGAGTTTAAGAATATTAATGGTACTAAATTCGTAGTAAAGGGGTATGGTGCC 2569 Query 9092 AAGACTGGTGTCCGTGGTGCGAAGGAGATGGGTAAACGTCCGCAGCTTGCGGTACTGGAT 9151 ||||| ||| | ||||||| |||||||||||||| ||| || ||| | || | || ||| Sbjct 2568 AAGACAGGTATTCGTGGTGTGAAGGAGATGGGTACACGCCCACAGATGGCTATCCTAGAT 2509 Query 9152 GACTTGGTTTCGGACGAAGATGCTCGCTCGCCCACTGTCATCGCAGCCATCGAGGACACG 9211 ||||| ||| | || || | || || || || || || ||| || | ||||| Sbjct 2508 GACTTAGTTAGTAATGATGACTCACGTTCACCTACAGTTATTCAAGCTATTAAAGACACA 2449 Query 9212 GTGTACAAGGCAGTGGACTATGCACTGCACCCGAAGAAGAACATGATCATCTGGTCGGGT 9271 || |||| | | |||||||| ||||| |||||| | || || ||| ||| Sbjct 2448 GTAGGTCAGGCTATTAAGTATGCACTTCACCCTAAGAAGTCTAAGACTATATGGCTTGGT 2389 Query 9272 ACACCGTTCAACGCGAAGGATCCATTGTACAAAGCAGTGGAGTCTGGTGCTTGGAAGGTC 9331 || || || || || || ||||| ||||| |||| |||| |||||||| ||| | || Sbjct 2388 ACTCCCTTTAATGCTAATGATCCTTTGTATGAAGCTATGGAATCTGGTGCATGGGATGTA 2329 Query 9332 AACGTCTACCCGGTATGTGAGCGGTTCCCCTGCTCGCGGGAAGAGTTCCGTGGTGCATGG 9391 | || || || |||||||| ||| || || | | |||||||| || |||||| Sbjct 2328 AGTGTATATCCTATATGTGAGAAGTTTCCTTGTACTAGAGAAGAGTTTAAAGGAGCATGG 2269 Query 9392 CCTGACCGATTCACCTACGACTTCGTGTTGCAG--AAGTACACCCTGGC-CAAG---AAG 9445 || || || || |||| ||| | || | |||| ||| | || ||| Sbjct 2268 GAGGATCGCTTTGATTATGACT--ATGTAGAAGCTATGTACCAAGAGGCACTAGCTCAAG 2211 Query 9446 GCAGGGAAGATCGAGACGTTCAACCAAGAGCTTATGCTCCAGATCATGTCTGACGAAGAC 9505 | | || || | ||| | |||||||||||||| || || |||||||| || || Sbjct 2210 GTATGGTGAATGG----TTTCTATCAAGAGCTTATGCTACAAATTATGTCTGATGAGGAT 2155 Query 9506 CGGCTCATCCAGGATGGTGAGGTGGCTTGGTACATGCGACGCAACGTGCTGGACAACAAG 9565 | | | |||||||| | |||| | | ||| || |||| || ||| Sbjct 2154 AGATTAGTAGTTGATGGTGATTTAAGATGGTTTACTTTAAAGAACCTGATGGATAATAAG 2095 Query 9566 AAGCGGTACAACTTCTACATCACCACTGACTTCGCTACCTCTGCGAAGAAGGCCAGTGAC 9625 || | || ||||| || || |||||||| ||||| || ||| | | |||| Sbjct 2094 AATAACTTTAATTTCTATATTACTACTGACTTTGCTACTAGTGAAAAGCAATCTGCTGAC 2035 Query 9626 TTCAGCATCATCAGTGTCTGGGCT 9649 || ||| | || ||||| |||||| Sbjct 2034 TTTAGCTTTATTAGTGTTTGGGCT 2011 >seq505100 Length=723 Score = 109 bits (120), Expect = 3e-19 Identities = 459/717 (64%), Gaps = 22/717 (3%) Strand=Plus/Minus Query 8914 TCTGTATGTGTCGGACTCCATCGACAACGGTGTGAAGAACATGCGGAAGAACCTGGAGTT 8973 ||||||| | || || ||||| || |||||||| | || ||| | |||||| | |||| Sbjct 710 TCTGTATATTTCTGATTCCATGGAGAACGGTGTTAGTAATATGAGAAAGAACTTAGAGTC 651 Query 8974 CCGTTGGGAGAACTC-TGAGTTCTTGAGGAAGTACATCCCTCAG------ACCAGCTTCA 9026 ||| |||| | ||||||||| || ||||| || | | || || | Sbjct 650 TCGTATT-AGAAATAGTGAGTTCTTACTTAAATACATACCAGAAGAGAATATGAGATTTA 592 Query 9027 CTGATATCCGTTGGAAGTTCACCAACCTGGATGGGAAGGTGTTCATCGTCAAAGGCTACG 9086 |||||| |||||| |||| | || |||| | || || | ||| | | Sbjct 591 CTGATAAGCGTTGGGAGTTTATGAATACCAATGGTAGTAAATTTTGTGTAAGAGGGTTTG 532 Query 9087 GTGCCAAGACTGGTGTCCGTGGTGCGAAGGAGATGGGTAAACGTCCGCAGCTTGCGGTAC 9146 |||| ||| ||||||| |||||| || || |||| ||||||||| ||| || Sbjct 531 GTGCTAAGTCTGGTGTTCGTGGTTTTAAAGAATATGGTATGCGTCCGCAGATTGGTATAA 472 Query 9147 TGGATGACTTGGTTTCGGACGAAGATGCTCGCTCGCCCACTGTCATCGCAGCCATCGAGG 9206 |||||||||||||| |||||||| | | || || |||| || | | || ||| Sbjct 471 TGGATGACTTGGTTAGTAACGAAGATTCAAGATCACCTACTGCTATTCAATCTATTAAGG 412 Query 9207 ACACGGTGTACAAGGCAGTGGACTATGCACTGCACCCGAAGAAGAACATGATCATCTGGT 9266 | || || |||| | | ||||| | ||||| | ||| | || || ||| Sbjct 411 ATACAGTTGGTCAGGCTATTAAGTATGCGTTACACCCAACTAAGTCTAAGAGAATATGGC 352 Query 9267 CGGGTACACCGTTCAACGCGAAGGATCCATTGTACAAAGCAGTGGAGTCTGGTGCTTGGA 9326 ||||| || || || || || ||||| || || |||| | ||||||||||||||| Sbjct 351 TTGGTACTCCCTTTAATGCTAACGATCCTTTATATCAAGCTATTGAGTCTGGTGCTTGGG 292 Query 9327 AGGTCAACGTCTACCCGGTATGTGAGCGGTTCCCCTGCTCGCGGGA--AGAGTTCCGTGG 9384 | || || || || ||||||||| ||| || || | || | |||||| || Sbjct 291 ATGTAGGTGTTTATCCAGTATGTGAGAAGTTTCCTTG--TGAGGAATCAGAGTTTAAAGG 234 Query 9385 TGCATGGCCTGACCGATTCACCTACGACTTCGTGTTGCA-GAAGTAC----ACCCTGGCC 9439 |||||| |||||| || ||||| | || | | | || |||| | ||| Sbjct 233 CGCATGGGATGACCGCTTTGGTTACGAGTATGT-TAGTACGATGTACGAAGAGTCTGTTG 175 Query 9440 AAGAAGGCAGGGAAGATCGAGACGTTCAACCAAGAGCTTATGCTCCAGATCATGTCTGAC 9499 ||||| | | ||| | ||| |||||||||||||||| ||||| ||| ||| Sbjct 174 CTGAAGGTAACGCTGATGG----TTTCTACCAAGAGCTTATGCTACAGATTATGAGTGAA 119 Query 9500 GAAGACCGGCTCATCCAGGATGGTGAGGTGGCTTGGTACATGCGACGCAACGTGCTGGAC 9559 ||||| | || | || ||| |||| || ||||| | | | || ||||| | Sbjct 118 GAAGATAGACTTGTACATGATAGTGATTTGCAGTGGTATAACAGTAGAGACTTGCTGAAT 59 Query 9560 AACAAGAAGCGGTACAACTTCTACATCACCACTGACTTCGCTACCTCTGCGAAGAAG 9616 || || | | ||||| || || | |||||||| || ||| || |||| || Sbjct 58 AAGAAAGATAACTTTAACTTTTATATTGCTACTGACTTTGCAACCAGTGAGAAGGAG 2 >seq523594 Length=514 Score = 105 bits (116), Expect = 3e-18 Identities = 98/121 (81%), Gaps = 4/121 (3%) Strand=Plus/Plus Query 43115 ACCCAGATCGGTGCTCGCTGGACAGCG-ACTGTTG-ATGTGAATGGTTTGGTTGGTGGCT 43172 ||| | ||||| || |||| ||| || || | || | || ||||||||| ||||||| | Sbjct 394 ACCAACATCGGCGC--GCTGTACACCGCACAGGTGCAGGTCAATGGTTTGATTGGTGGTT 451 Query 43173 TCGGTGTGTACAACGATGGACGTACTGTTGAAGCTGGCTTCAACGTAGACCGTTTCTGGA 43232 ||||||||||||||||||| || ||||| ||||| || ||| |||| ||||| ||||||| Sbjct 452 TCGGTGTGTACAACGATGGTCGCACTGTAGAAGCCGGTTTCGACGTGGACCGCTTCTGGA 511 Query 43233 T 43233 | Sbjct 512 T 512 >seq469180 Length=838 Score = 104 bits (114), Expect = 1e-17 Identities = 266/401 (66%), Gaps = 3/401 (1%) Strand=Plus/Plus Query 13013 ACTACGAGTTCAACCCTGGTGCAGACCCACGGGCTGCTGTGCACATGCACACCTTCCCGG 13072 ||||||||| |||| ||||| || ||| | || | ||||||| | | || | Sbjct 24 ACTACGAGTACAACGGTGGTGTTGATCCAAGTAAAGCATTTTACATGCATAAGTATCCTG 83 Query 13073 AGATTCCTCAGTCCGCTCA-GTACATGATCAACCTGCAACAAGCAGAAGCTGAATCCATG 13131 || || | ||||| |||| ||| ||| | | ||||||| ||||||||||| | Sbjct 84 AGCTTTCACAGTCAGCTCCTGTA-ATGCTTAGTATGCAACACAATGAAGCTGAATCATTA 142 Query 13132 ACTGGTGTGAAAGCTTTCAACGCTGGCATCTCTGGTGCTGCACTCGGTGACACCGCTACT 13191 || ||| | ||||| || | |||| | ||||| |||| | ||||| || | | | Sbjct 143 ACAGGTATCAAAGCATTTAGTACTGGTGTAAGTGGTGATGCATTTGGTGATACTGTTGGT 202 Query 13192 GCTGTGCGTGGTGCATTGGATGCTGCGTCGAAGCGTGAGCTTGGAATCCTCCGCCGTCTC 13251 || ||||||||| |||| |||| || || |||||| | || ||| | || | | Sbjct 203 AATGCTCGTGGTGCAATGGACTCTGCTTCTAAACGTGAGATAGGTATCTTACGTAG-ATA 261 Query 13252 TCTGCTGGGATCATCGAGATCGGTCGAAAGATCATCGCCATGAACGCTGAGTTCCTGGAC 13311 ||| || || ||||| || || ||||| || |||||||| |||| | || Sbjct 262 GGTGCAGGCATTGAAGAGATTGGCCGTAAGATTATAAGTATGAACGCCTTGTTCTTAGAA 321 Query 13312 GATGTGGAAGTGGTACGGATCACCAACGAGCACTTCGTGGATATCCGCAGGGATGACCTT 13371 || | ||||| |||| || || |||| | ||||| ||| | ||||||||| Sbjct 322 GAAGAAGAAGTTATACGAATTACTGACGAAGAGTTCGTTACTATTAAACGTGATGACCTT 381 Query 13372 GCTGGTAACTTCGACCTCAAGCTGGACATCTCCACTGCTGA 13412 ||||||||||| || | ||||| || || ||| |||| Sbjct 382 GCTGGTAACTTTGATGTTAAGCTAACTATATCTACTACTGA 422 >seq513583 Length=228 Score = 100 bits (110), Expect = 1e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 9023 TTCACTGATATCCGTTGGAAGTTCACCAACCTGGATGGGAAGGTGTTCATCGTCAAAGGC 9082 || || ||||| |||||| | || | ||| | ||||| || || || || |||||| Sbjct 55 TTTACAGATATACGTTGGGAATTTAATAACGTAGATGGTAATCGTTTTATAGTGAAAGGC 114 Query 9083 TACGGTGCCAAGACTGGTGTCCGTGGTGCGAAGGAGATGGGTAAACGTCCGCAGCTTGCG 9142 || || || || || ||||| |||||||| || || ||||||||||| || ||||| Sbjct 115 TATGGAGCTAAAACGGGTGTGCGTGGTGCAAAAGAAATGGGTAAACGACCTGTACTTGCT 174 Query 9143 GTACTGGATGACTTGGTTTCGGACGAAGATGCTCGCTC 9180 |||||||| || || | || || |||||||| ||||| Sbjct 175 GTACTGGACGATTTAATATCAGATGAAGATGCACGCTC 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 229410854713566