Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq150714 132 4e-26 >seq150714 Length=4870 Score = 132 bits (146), Expect = 4e-26 Identities = 128/162 (79%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC-GCGAA 34623 || || || || ||||| || ||||| |||||| |||||||||| |||||||| |||| Sbjct 2147 GACCTGCCCCTCATGGCTCTGCCCCCCTGCCACGCCCTCTGCCAGTTCTACGTGTGCGA- 2205 Query 34624 TGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTT 34683 ||| |||||||| || ||||| || || || ||||| || ||||| | || ||||| || Sbjct 2206 TGGCGAGCTGTCGTGTCAGCTGTACCAGCGCTCGGGGGATATGGGTCTGGGCGTGCCTTT 2265 Query 34684 CAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||| || || || ||||| || ||||| ||||||||||| || Sbjct 2266 CAATATCGCCAGCTACGCACTTCTCACCTACATGATCGCCCA 2307 Score = 132 bits (146), Expect = 4e-26 Identities = 128/162 (79%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| ||||| || ||||| || || || ||||| ||||| || | ||| Sbjct 2307 TGGGCGATCATGTAGGTGAGAAGTGCGTAGCTGGCGATATTGAAAGGCACGCCCAGACCC 2248 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC-GACGTAGAATTG 6738 || || ||||| || || || ||||| || |||||||| ||| |||| |||||||| || Sbjct 2247 ATATCCCCCGAGCGCTGGTACAGCTGACACGACAGCTCGCCA-TCGCACACGTAGAACTG 2189 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 |||||||| |||||| ||||| || ||||| || || || || Sbjct 2188 GCAGAGGGCGTGGCAGGGGGGCAGAGCCATGAGGGGCAGGTC 2147 Score = 116 bits (128), Expect = 3e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 34288 GGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGG 34347 |||| | || ||| |||||||||||||| ||||||||||||||||| || |||| Sbjct 1552 GGGGTCAACAAACGCCAAGGAGCTCTCGGAGAAAGGGGTGAAGATCTGGGAAGCCAACGG 1611 Query 34348 GTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCC 34407 ||||||| | || ||||| || | |||||| | | || ||||||||| |||| || Sbjct 1612 GTCTCGACAGTTCCTGGATAACCTCGGGTTCACGGACAGAGAAGAGGGCGACCTGGGACC 1671 Query 34408 GGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || ||||| ||||||||||| ||||| || || || || Sbjct 1672 CGTGTACGGATTCCAGTGGAGGCACTTCGGTGCAGAATA 1710 Score = 116 bits (128), Expect = 3e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || || ||||| ||||||||||| ||||| || || |||| ||||||||| || Sbjct 1710 TATTCTGCACCGAAGTGCCTCCACTGGAATCCGTACACGGGTCCCAGGTCGCCCTCTTCT 1651 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | |||||| | || ||||| || | ||||||||||| || |||||||||||| Sbjct 1650 CTGTCCGTGAACCCGAGGTTATCCAGGAACTGTCGAGACCCGTTGGCTTCCCAGATCTTC 1591 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCC 7057 ||||| |||||||||||||| ||| || | |||| Sbjct 1590 ACCCCTTTCTCCGAGAGCTCCTTGGCGTTTGTTGACCCC 1552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445317865153440