Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq152719 167 5e-36
seq6427 159 8e-34
seq152718 154 3e-32
seq59939 138 3e-27
seq59938 123 6e-23
seq30307 95.1 3e-14
>seq152719
Length=2073
Score = 167 bits (184), Expect = 5e-36
Identities = 166/215 (77%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| ||||| || | ||||| ||||| |||||||||||||| | | ||| | ||||||
Sbjct 515 AGCACAAGATGGATGGTGGATTCTTTCTGGATGTTATAATCTGACATGGTGCGACCATCT 574
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| || ||||| || | || || |||||||| | || ||||| |||
Sbjct 575 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTATCC 634
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||| || || || |||||||| | ||||||||| |||||||| |||
Sbjct 635 TGGATCTTAGCTTTTACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATAGTC 694
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || || || ||||| ||||| | |||||| ||
Sbjct 695 TTACCAGTCAGGGTCTTCACAAAGATCTGCATCTT 729
Score = 158 bits (174), Expect = 3e-33
Identities = 162/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| ||||| || || ||||||||||| |||||||| || || | || || | || |||
Sbjct 59 AGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCT 118
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| || ||||| || | || || |||||||| | || ||||| |||
Sbjct 119 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTATCC 178
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||| || || || |||||||| | ||||||||| |||||||| | |
Sbjct 179 TGGATCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATGGAC 238
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || || ||||| ||||| | ||||||
Sbjct 239 TTACCAGTCAGGGTCTTCACAAAGATCTGCAT 270
Score = 149 bits (164), Expect = 1e-30
Identities = 150/195 (77%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 210920 GGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGC 210979
||||||||| |||||||| || || | || || | || ||||||||||||||||| ||
Sbjct 304 GGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGC 363
Query 210980 GAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCAC 211039
||||| || | || ||||| ||||| | |||||||| ||||||||||| ||| ||
Sbjct 364 AAAGATGAGCCTCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTAGCTTTGAC 423
Query 211040 GTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTT 211099
|| || |||||||| | ||||||| | |||||||| ||||| || ||||| |||||
Sbjct 424 ATTCTCAATGGTGTCGTTGGGTTCAACCACCAGAGTGATAGTCTTGCCTGTGAGGGTCTT 483
Query 211100 TACAAACACCTGCAT 211114
||||| | ||| ||
Sbjct 484 CACAAAGATCTGAAT 498
>seq6427
Length=3314
Score = 159 bits (176), Expect = 8e-34
Identities = 150/191 (79%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|||||||| || || |||||||| || |||||||| || || | ||||| | ||||||
Sbjct 3123 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 3182
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| || ||||| || | || || || || |||| ||||||||||||
Sbjct 3183 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 3242
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || |||||||||||||| | |||||||| || ||||| |||
Sbjct 3243 TGGATCTTGGCCTTGACATTTTCGATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTC 3302
Query 211083 TTTCCCGTGAG 211093
|| ||||||||
Sbjct 3303 TTGCCCGTGAG 3313
>seq152718
Length=3078
Score = 154 bits (170), Expect = 3e-32
Identities = 160/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964
|||||| || || ||||||||||| |||||| | || || | || || | ||||||||
Sbjct 2164 GACAAGATGGAGGGTGGACTCTTTCTGGATGCTGTAGTCGGAGAGAGTGCGACCATCTTC 2223
Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024
|||||||||||| || ||||| || | | || |||| ||| | |||||||| |||||
Sbjct 2224 CAGCTGCTTGCCGGCAAAGATCAGCCTGTACTGTTCAGAAGGGATGCCTTCCTTATCCTG 2283
Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084
||||| ||| || || || |||||||| | ||||||||| |||||||| |||||
Sbjct 2284 AATCTTAACTTTGACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATGGTCTT 2343
Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || ||||| ||||| | ||||||
Sbjct 2344 ACCAGTCAGGGTCTTCACAAAGATCTGCAT 2373
Score = 113 bits (124), Expect = 1e-19
Identities = 145/200 (73%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 210915 AGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTG 210974
|| ||||| || |||| | |||| || || | | |||| ||||| |||||||| |||
Sbjct 1946 AGGGTGGATTCCTTTTTGCTGTTGTAGTCGGAGGGAGTCCGGCCATCATCCAGCTGTTTG 2005
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| ||||||| |||| || || || ||| | | |||| ||| ||||| ||||| | |
Sbjct 2006 CCCTCGAAGATCAGGCTCTGCTGCTCTGGATGGATGCCTTTCTTATCCTGAATCTTGTAT 2065
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|| || || |||||||||||| | |||| ||| |||||| | ||||| | | ||
Sbjct 2066 TTGACATTCTCGATGGTGTCACTGGACTCAATCTCAAGAGTGGTGGTCTTAGCAATCAGG 2125
Query 211095 GTCTTTACAAACACCTGCAT 211114
||||| ||||| | ||| ||
Sbjct 2126 GTCTTCACAAAGATCTGGAT 2145
Score = 91.5 bits (100), Expect = 3e-13
Identities = 149/215 (69%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| ||||| || || ||||| || | || ||||||||||| | | ||| ||||||
Sbjct 2618 AGCACAAGATGGAGGGTGGAGTCCCTCTGAATGTTATAATCAGACATGGTGTGACCATCT 2677
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||| |||| ||||| || | || || |||||||| |||||| | |||
Sbjct 2678 TCCAGCTGCCTGCCGCAAAAGATCAGCCTCTGCTGATCAGGAGGGTAGCCTTCCCTATCC 2737
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||| || | || | |||| | |||||| || |||||||| |||
Sbjct 2738 TGGATCTTAGCTTTGACATACTCAACGGTGCTGCTGGGTTCAACATCCAGAGTGATAGTC 2797
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
| | | |||| | ||||| | |||||| ||
Sbjct 2798 T------TAATAGTCCTCACAAAGATCTGCATCTT 2826
>seq59939
Length=800
Score = 138 bits (152), Expect = 3e-27
Identities = 127/161 (79%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016
||||||||||||||||| || || ||||| || | || || || || |||| ||||||
Sbjct 8 CCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 67
Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076
|||||||||||||| || || |||||||| |||||| ||||||||||| |||
Sbjct 68 TTGTCCTGGATCTTGGCCTTGACATTTTCGATTGTGTCACTAGGCTCAACCTCGAGGGTG 127
Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| ||||| |||||||| ||||| ||||| | |||||| ||
Sbjct 128 ATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 168
>seq59938
Length=2926
Score = 123 bits (136), Expect = 6e-23
Identities = 148/200 (74%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || | || |||||||| || |||||||| || | ||||| | ||||||
Sbjct 2727 AGGACCAGACGGAGGGTGGACTCCTTCTGGATGTTGTATAGAG--AGGGTGCGGCCATCT 2784
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||| |||||||| || ||||| || | || || || || |||| ||||||||||||
Sbjct 2785 TCCGAATGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 2844
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || ||||| |||||||| | |||||||| || ||||| |||
Sbjct 2845 TGGATCTTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTC 2904
Query 211083 TTTCCCGTGAGAGTCTTTAC 211102
|| || ||||| ||||| ||
Sbjct 2905 TTGCCAGTGAGGGTCTTGAC 2924
>seq30307
Length=6480
Score = 95.1 bits (104), Expect = 3e-14
Identities = 140/194 (72%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881
|| ||||||||||| |||||||||||||||| | || ||| ||| ||||||||||||
Sbjct 3062 GGCAGAGGAGGACAGTCTGCTCTGCGTTTTGCTCGTCTGAGAATGGAGAAGAGGCACAAC 3003
Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAG-TGTT--TTATCAAAGACAACAAGTGT 139938
|| |||||||||| || |||| || | ||| | || | ||| |||| ||||
Sbjct 3002 TATGTGAGAAAAGTGGCTGAGACGGCTGTCCAGCTCTTCGTGTCCAACGACA--AAGT-C 2946
Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCT 139998
||| | || || || ||||| || || || || ||||||||| | ||| | ||
Sbjct 2945 AATGTGGCAGGAATGGTCTTGGCTGGCTCTGCCGACTTCAAGACAGAACTCAGTCAGTCC 2886
Query 139999 GACTTTTTTGACCC 140012
||| | ||||||||
Sbjct 2885 GACATGTTTGACCC 2872
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151347436104230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |