Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq152719 167 5e-36 seq6427 159 8e-34 seq152718 154 3e-32 seq59939 138 3e-27 seq59938 123 6e-23 seq30307 95.1 3e-14 >seq152719 Length=2073 Score = 167 bits (184), Expect = 5e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || | ||||| ||||| |||||||||||||| | | ||| | |||||| Sbjct 515 AGCACAAGATGGATGGTGGATTCTTTCTGGATGTTATAATCTGACATGGTGCGACCATCT 574 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || |||||||| | || ||||| ||| Sbjct 575 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTATCC 634 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| || || || |||||||| | ||||||||| |||||||| ||| Sbjct 635 TGGATCTTAGCTTTTACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATAGTC 694 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| ||||| | |||||| || Sbjct 695 TTACCAGTCAGGGTCTTCACAAAGATCTGCATCTT 729 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || ||||||||||| |||||||| || || | || || | || ||| Sbjct 59 AGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCT 118 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || |||||||| | || ||||| ||| Sbjct 119 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTATCC 178 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| || || || |||||||| | ||||||||| |||||||| | | Sbjct 179 TGGATCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATGGAC 238 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 239 TTACCAGTCAGGGTCTTCACAAAGATCTGCAT 270 Score = 149 bits (164), Expect = 1e-30 Identities = 150/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 210920 GGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGC 210979 ||||||||| |||||||| || || | || || | || ||||||||||||||||| || Sbjct 304 GGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGC 363 Query 210980 GAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCAC 211039 ||||| || | || ||||| ||||| | |||||||| ||||||||||| ||| || Sbjct 364 AAAGATGAGCCTCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTAGCTTTGAC 423 Query 211040 GTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTT 211099 || || |||||||| | ||||||| | |||||||| ||||| || ||||| ||||| Sbjct 424 ATTCTCAATGGTGTCGTTGGGTTCAACCACCAGAGTGATAGTCTTGCCTGTGAGGGTCTT 483 Query 211100 TACAAACACCTGCAT 211114 ||||| | ||| || Sbjct 484 CACAAAGATCTGAAT 498 >seq6427 Length=3314 Score = 159 bits (176), Expect = 8e-34 Identities = 150/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 3123 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 3182 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || || || |||| |||||||||||| Sbjct 3183 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 3242 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || |||||||||||||| | |||||||| || ||||| ||| Sbjct 3243 TGGATCTTGGCCTTGACATTTTCGATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTC 3302 Query 211083 TTTCCCGTGAG 211093 || |||||||| Sbjct 3303 TTGCCCGTGAG 3313 >seq152718 Length=3078 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 |||||| || || ||||||||||| |||||| | || || | || || | |||||||| Sbjct 2164 GACAAGATGGAGGGTGGACTCTTTCTGGATGCTGTAGTCGGAGAGAGTGCGACCATCTTC 2223 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 |||||||||||| || ||||| || | | || |||| ||| | |||||||| ||||| Sbjct 2224 CAGCTGCTTGCCGGCAAAGATCAGCCTGTACTGTTCAGAAGGGATGCCTTCCTTATCCTG 2283 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||||| ||| || || || |||||||| | ||||||||| |||||||| ||||| Sbjct 2284 AATCTTAACTTTGACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATGGTCTT 2343 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| ||||| | |||||| Sbjct 2344 ACCAGTCAGGGTCTTCACAAAGATCTGCAT 2373 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210915 AGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTG 210974 || ||||| || |||| | |||| || || | | |||| ||||| |||||||| ||| Sbjct 1946 AGGGTGGATTCCTTTTTGCTGTTGTAGTCGGAGGGAGTCCGGCCATCATCCAGCTGTTTG 2005 Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || ||||||| |||| || || || ||| | | |||| ||| ||||| ||||| | | Sbjct 2006 CCCTCGAAGATCAGGCTCTGCTGCTCTGGATGGATGCCTTTCTTATCCTGAATCTTGTAT 2065 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || |||||||||||| | |||| ||| |||||| | ||||| | | || Sbjct 2066 TTGACATTCTCGATGGTGTCACTGGACTCAATCTCAAGAGTGGTGGTCTTAGCAATCAGG 2125 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| ||||| | ||| || Sbjct 2126 GTCTTCACAAAGATCTGGAT 2145 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || ||||| || | || ||||||||||| | | ||| |||||| Sbjct 2618 AGCACAAGATGGAGGGTGGAGTCCCTCTGAATGTTATAATCAGACATGGTGTGACCATCT 2677 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||| |||| ||||| || | || || |||||||| |||||| | ||| Sbjct 2678 TCCAGCTGCCTGCCGCAAAAGATCAGCCTCTGCTGATCAGGAGGGTAGCCTTCCCTATCC 2737 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| || | || | |||| | |||||| || |||||||| ||| Sbjct 2738 TGGATCTTAGCTTTGACATACTCAACGGTGCTGCTGGGTTCAACATCCAGAGTGATAGTC 2797 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 | | | |||| | ||||| | |||||| || Sbjct 2798 T------TAATAGTCCTCACAAAGATCTGCATCTT 2826 >seq59939 Length=800 Score = 138 bits (152), Expect = 3e-27 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||||||||||||||| || || ||||| || | || || || || |||| |||||| Sbjct 8 CCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 67 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||||||||| || || |||||||| |||||| ||||||||||| ||| Sbjct 68 TTGTCCTGGATCTTGGCCTTGACATTTTCGATTGTGTCACTAGGCTCAACCTCGAGGGTG 127 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| |||||||| ||||| ||||| | |||||| || Sbjct 128 ATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 168 >seq59938 Length=2926 Score = 123 bits (136), Expect = 6e-23 Identities = 148/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || | || |||||||| || |||||||| || | ||||| | |||||| Sbjct 2727 AGGACCAGACGGAGGGTGGACTCCTTCTGGATGTTGTATAGAG--AGGGTGCGGCCATCT 2784 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||| |||||||| || ||||| || | || || || || |||| |||||||||||| Sbjct 2785 TCCGAATGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 2844 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || ||||| |||||||| | |||||||| || ||||| ||| Sbjct 2845 TGGATCTTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTC 2904 Query 211083 TTTCCCGTGAGAGTCTTTAC 211102 || || ||||| ||||| || Sbjct 2905 TTGCCAGTGAGGGTCTTGAC 2924 >seq30307 Length=6480 Score = 95.1 bits (104), Expect = 3e-14 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 || ||||||||||| |||||||||||||||| | || ||| ||| |||||||||||| Sbjct 3062 GGCAGAGGAGGACAGTCTGCTCTGCGTTTTGCTCGTCTGAGAATGGAGAAGAGGCACAAC 3003 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAG-TGTT--TTATCAAAGACAACAAGTGT 139938 || |||||||||| || |||| || | ||| | || | ||| |||| |||| Sbjct 3002 TATGTGAGAAAAGTGGCTGAGACGGCTGTCCAGCTCTTCGTGTCCAACGACA--AAGT-C 2946 Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCT 139998 ||| | || || || ||||| || || || || ||||||||| | ||| | || Sbjct 2945 AATGTGGCAGGAATGGTCTTGGCTGGCTCTGCCGACTTCAAGACAGAACTCAGTCAGTCC 2886 Query 139999 GACTTTTTTGACCC 140012 ||| | |||||||| Sbjct 2885 GACATGTTTGACCC 2872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151347436104230