Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq152719 114 9e-21
seq152718 95.1 8e-15
seq6427 89.7 3e-13
seq59939 86.0 4e-12
>seq152719
Length=2073
Score = 114 bits (126), Expect = 9e-21
Identities = 166/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|| ||||| || || || |||||||| || || || |||||||| | ||||| |||
Sbjct 498 ATTCAGATCTTTGTGAAGACCCTCACAGGCAAGACTATCACTCTGGTGGTTGAACCCAAC 439
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | ||| | || | | || || ||||| | || ||||| ||
Sbjct 438 GACACCATTGAGAATGTCAAAGCTAAGA-TCCAGGATAAGGAAGGCATCCCTCCAGACCA 380
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || ||||||||||| || |||||||||| |||||| | ||| |||||
Sbjct 379 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCCGACTACAA 320
Query 23790 CATACAAAAAGAGTCC-ACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
||| || ||||||||| |||| ||| | || || || || |||||||
Sbjct 319 CATCCAGAAAGAGTCCTGCATT-CATCTGGTCTTGCGGCTGAGAGGAGG 272
Score = 107 bits (118), Expect = 1e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || ||||| || || || | |||||||| || ||||| |||
Sbjct 270 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGTCCATCACTCTGGAGGTTGAACCCAGC 211
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | ||| | || | | || || || || | || || |||||
Sbjct 210 GACACCATTGAGAATGTCAAAGCTAAGA-TCCAGGATAAGGAGGGCATCCCTCCTGATCA 152
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || ||||||||||| || |||||||||| |||||| | ||| |||||
Sbjct 151 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCCGACTACAA 92
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || |||||||||||
Sbjct 91 CATCCAGAAAGAGTCCAC 74
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| || || || ||||| || || || || |||||||| || ||||| ||
Sbjct 729 AAGATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACTATCACTCTGGAGGTTGAACCC 670
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| ||||| |||| | ||||| || || || || || || | || || |||
Sbjct 669 AGCGACACCATTGAGAATGTAAAAGCTAAGATCCAGGATAAGGAGGGCATCCCTCCTGAT 610
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| ||| | | || ||||||||||| || |||||||| | ||||| | |||||
Sbjct 609 CAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCATGTCAGATTAT 550
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
||||| || ||||| ||||| | ||| | || | | ||| |||||||
Sbjct 549 AACATCCAGAAAGAATCCACCATCCATCTTGTGCTGCGCTTGAGAGGAGG 500
>seq152718
Length=3078
Score = 95.1 bits (104), Expect = 8e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || ||||| || || || || |||||||| || ||||| |||
Sbjct 2373 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACTCTGGAGGTTGAACCCAGC 2314
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | | ||| || ||| || || ||||| | || | || ||
Sbjct 2313 GACACCATTGAGAATGTCAAAGTTAAGATTCAGGATAAGGAAGGCATCCCTTCTGAACAG 2254
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
| | | || ||||||||||| || |||||||| | |||||| | ||| |||| |
Sbjct 2253 TACAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACTCTCTCCGACTACAGC 2194
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| || ||||||||||| | ||| | || || || || || ||||
Sbjct 2193 ATCCAGAAAGAGTCCACCCTCCATCTTGTCTTGCGGCTGAGAAGAGG 2147
>seq6427
Length=3314
Score = 89.7 bits (98), Expect = 3e-13
Identities = 126/177 (71%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 23631 CCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAA 23690
||||||||| || || ||||| || || ||||| ||| ||||| | |||| | ||
Sbjct 3314 CCTCACGGGCAAGACCATCACCCTGGAGGTTGAGCCCAGCGACACCATCGAAAATGTCAA 3255
Query 23691 ACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGG 23750
|| || ||||| ||||| | || |||||||| ||| | | || ||||||||
Sbjct 3254 GGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAGAGGCTGATCTTTGCCGG 3195
Query 23751 CAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807
||| || |||||||| | ||||| | ||| |||||||| || || ||||||||
Sbjct 3194 CAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCAC 3138
>seq59939
Length=800
Score = 86.0 bits (94), Expect = 4e-12
Identities = 119/167 (71%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| || || || ||||||||||| || || ||||| ||||| ||||| |
Sbjct 168 AACATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTTGAGCCT 109
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| ||||| | |||| | || || || ||||| ||||| | || ||||||
Sbjct 108 AGTGACACAATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGAT 49
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC 23774
|| ||| | | || |||||||| || || |||||||| | |||||
Sbjct 48 CAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCAC 2
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 335844798715016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |