Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq152719 114 9e-21 seq152718 95.1 8e-15 seq6427 89.7 3e-13 seq59939 86.0 4e-12 >seq152719 Length=2073 Score = 114 bits (126), Expect = 9e-21 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 || ||||| || || || |||||||| || || || |||||||| | ||||| ||| Sbjct 498 ATTCAGATCTTTGTGAAGACCCTCACAGGCAAGACTATCACTCTGGTGGTTGAACCCAAC 439 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | || | | || || ||||| | || ||||| || Sbjct 438 GACACCATTGAGAATGTCAAAGCTAAGA-TCCAGGATAAGGAAGGCATCCCTCCAGACCA 380 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||||||||| || |||||||||| |||||| | ||| ||||| Sbjct 379 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCCGACTACAA 320 Query 23790 CATACAAAAAGAGTCC-ACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || ||||||||| |||| ||| | || || || || ||||||| Sbjct 319 CATCCAGAAAGAGTCCTGCATT-CATCTGGTCTTGCGGCTGAGAGGAGG 272 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || | |||||||| || ||||| ||| Sbjct 270 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGTCCATCACTCTGGAGGTTGAACCCAGC 211 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | || | | || || || || | || || ||||| Sbjct 210 GACACCATTGAGAATGTCAAAGCTAAGA-TCCAGGATAAGGAGGGCATCCCTCCTGATCA 152 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||||||||| || |||||||||| |||||| | ||| ||||| Sbjct 151 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCCGACTACAA 92 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 91 CATCCAGAAAGAGTCCAC 74 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || ||||| || || || || |||||||| || ||||| || Sbjct 729 AAGATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACTATCACTCTGGAGGTTGAACCC 670 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||| | ||||| || || || || || || | || || ||| Sbjct 669 AGCGACACCATTGAGAATGTAAAAGCTAAGATCCAGGATAAGGAGGGCATCCCTCCTGAT 610 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||||||||| || |||||||| | ||||| | ||||| Sbjct 609 CAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCATGTCAGATTAT 550 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| || ||||| ||||| | ||| | || | | ||| ||||||| Sbjct 549 AACATCCAGAAAGAATCCACCATCCATCTTGTGCTGCGCTTGAGAGGAGG 500 >seq152718 Length=3078 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || |||||||| || ||||| ||| Sbjct 2373 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACTCTGGAGGTTGAACCCAGC 2314 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | ||| || ||| || || ||||| | || | || || Sbjct 2313 GACACCATTGAGAATGTCAAAGTTAAGATTCAGGATAAGGAAGGCATCCCTTCTGAACAG 2254 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 | | | || ||||||||||| || |||||||| | |||||| | ||| |||| | Sbjct 2253 TACAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACTCTCTCCGACTACAGC 2194 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || ||||||||||| | ||| | || || || || || |||| Sbjct 2193 ATCCAGAAAGAGTCCACCCTCCATCTTGTCTTGCGGCTGAGAAGAGG 2147 >seq6427 Length=3314 Score = 89.7 bits (98), Expect = 3e-13 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 23631 CCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAA 23690 ||||||||| || || ||||| || || ||||| ||| ||||| | |||| | || Sbjct 3314 CCTCACGGGCAAGACCATCACCCTGGAGGTTGAGCCCAGCGACACCATCGAAAATGTCAA 3255 Query 23691 ACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGG 23750 || || ||||| ||||| | || |||||||| ||| | | || |||||||| Sbjct 3254 GGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAGAGGCTGATCTTTGCCGG 3195 Query 23751 CAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 ||| || |||||||| | ||||| | ||| |||||||| || || |||||||| Sbjct 3194 CAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCAC 3138 >seq59939 Length=800 Score = 86.0 bits (94), Expect = 4e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || ||||||||||| || || ||||| ||||| ||||| | Sbjct 168 AACATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTTGAGCCT 109 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | |||| | || || || ||||| ||||| | || |||||| Sbjct 108 AGTGACACAATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGAT 49 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC 23774 || ||| | | || |||||||| || || |||||||| | ||||| Sbjct 48 CAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCAC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335844798715016