Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq6427 132 1e-25 seq503174 116 9e-21 seq142355 114 3e-20 seq142420 113 1e-19 seq483502 111 4e-19 seq127494 107 5e-18 seq152719 105 2e-17 seq296161 102 2e-16 seq268572 102 2e-16 seq459689 100 7e-16 seq242303 100 7e-16 seq142421 95.1 3e-14 seq59939 93.3 1e-13 seq312118 89.7 1e-12 seq59938 86.0 1e-11 >seq6427 Length=3314 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| ||||| ||||| || || |||| ||||| |||| | || | |||||| Sbjct 3123 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 3182 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || || || || ||||| ||||||||||| Sbjct 3183 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 3242 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| |||||||||||| || || || || | ||||| ||| Sbjct 3243 TGGATCTTGGCCTTGACATTTTCGATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTC 3302 Query 225682 TTGCCCGT 225689 |||||||| Sbjct 3303 TTGCCCGT 3310 >seq503174 Length=251 Score = 116 bits (128), Expect = 9e-21 Identities = 105/131 (80%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 7733 GGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAAT 7792 || ||||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | Sbjct 234 GGATGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGG 175 Query 7793 CTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTT-A 7851 | |||||| || |||||||||||||||||||| |||| | | |||| || ||||| | Sbjct 174 CCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGTCTATTTAA 115 Query 7852 CGCGTTAGCTT 7862 |||||||||| Sbjct 114 TGCGTTAGCTT 104 >seq142355 Length=845 Score = 114 bits (126), Expect = 3e-20 Identities = 110/140 (79%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783 ||| || || || |||||| ||||| ||||| ||| ||||||||||||| ||||||||| Sbjct 643 TATGTCAAGTGTAGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGC 584 Query 7784 TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 || | | | |||||| || |||||||||||||||||||| |||| | | |||| || Sbjct 583 TTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGG 524 Query 7844 AATA-TTTACGCGTTAGCTT 7862 || || | |||||||||| Sbjct 523 TCTACTTAATGCGTTAGCTT 504 >seq142420 Length=711 Score = 113 bits (124), Expect = 1e-19 Identities = 109/139 (78%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || || || |||||| ||||| ||||| ||| ||||||||||||| |||||||||| Sbjct 643 ATGTCAAGAGTAGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCT 584 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844 | | | | |||||| || |||||||||||||||||||| |||| | | |||| || Sbjct 583 TGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGT 524 Query 7845 ATA-TTTACGCGTTAGCTT 7862 || || | |||||||||| Sbjct 523 CTACTTAATGCGTTAGCTT 505 >seq483502 Length=393 Score = 111 bits (122), Expect = 4e-19 Identities = 108/138 (78%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || |||| ||||||| ||||| ||||| ||| ||||||||||||| |||||||||| Sbjct 383 ATGTCAAGGGATGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCT 324 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844 | | | | |||||| || |||||||||||||||||||| |||| | | |||| || Sbjct 323 TGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGT 264 Query 7845 ATATTTA-CGCGTTAGCT 7861 | ||| ||||||||| Sbjct 263 CAACTTAGTGCGTTAGCT 246 >seq127494 Length=1980 Score = 107 bits (118), Expect = 5e-18 Identities = 100/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | | | Sbjct 884 GGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCC 825 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA-CGCG 7855 ||||| || |||||||||||||||||||| |||| | | |||| || || ||| ||| Sbjct 824 CGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGTCTACTTATTGCG 765 Query 7856 TTAGCT 7861 |||||| Sbjct 764 TTAGCT 759 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/100 (81%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||| |||||||| | ||||||| | || ||| | ||||| Sbjct 195 TGAGAGGATGATCAGCCACACCGGGACTGAGACACGGCCCG-GACTCCTACGGGAGGCAG 253 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 |||||| ||||||| ||||||||| |||| | ||||| || Sbjct 254 CAGTGGGGAATATTGGACAATGGGGGAAACCCTGATCCAG 293 >seq152719 Length=2073 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| |||| ||||||||||| |||| || ||||| | || || | ||||| Sbjct 514 CAGCACAAGATGGATGGTGGATTCTTTCTGGATGTTATAATCTGACATGGTGCGACCATC 573 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || || || || || || || ||||| || Sbjct 574 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTATC 633 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| || ||| || |||||||| || ||| || || | ||||| || Sbjct 634 CTGGATCTTAGCTTTTACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATAGT 693 Query 225681 CTTGCCCGTCA 225691 ||| || |||| Sbjct 694 CTTACCAGTCA 704 >seq296161 Length=326 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || || || |||||| ||||| ||||| ||| ||||||||||||| |||||||||| Sbjct 123 ATGTCAAGAGTAGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCT 64 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 | | | | |||||| || |||||||||||||||||||| |||| | | |||| || Sbjct 63 TGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGG 5 >seq268572 Length=1256 Score = 102 bits (112), Expect = 2e-16 Identities = 106/138 (77%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || ||| ||||||| ||||| ||||| || ||||||||||||| |||||||||| Sbjct 661 ATGTCAAGGCCTGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCT 602 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG- 7843 | | | | |||||| || |||||||||||||||||||| |||| | | |||| || Sbjct 601 TGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGT 542 Query 7844 AATATTTACGCGTTAGCT 7861 | || | ||||||||| Sbjct 541 CAACTTAATGCGTTAGCT 524 >seq459689 Length=365 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||| ||||| || || || ||||| || ||||| |||||||| ||||| Sbjct 7 GAAAATTTGACCATCTGTAATCGAAATTACGTTTGTTGGAATATATGCAGAAACGTCACC 66 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 ||||| ||||||| || ||||| || |||| ||| || ||||| Sbjct 67 AGCTTGAGTTTCGATAATAGGTAGTGCCGTTAATGAACCTCCACC 111 >seq242303 Length=641 Score = 100 bits (110), Expect = 7e-16 Identities = 101/130 (78%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 7735 TTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCT 7794 |||||||| ||| | |||| ||| ||||||||||||| ||||||||||| | | | Sbjct 493 TTGGTAAGGTTCCTCGCGTATCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCC 434 Query 7795 TCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA-CG 7853 |||||| || |||||||||| || |||||| ||||| | | ||||||| ||| ||| | Sbjct 433 CCCGTCAATTCCTTTGAGTTTCAAACTTGCGTTCGTACTCCCCAGGTGGGATACTTATCA 374 Query 7854 CGTTAGCTTA 7863 | || ||||| Sbjct 373 CTTTCGCTTA 364 >seq142421 Length=429 Score = 95.1 bits (104), Expect = 3e-14 Identities = 81/96 (84%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 56 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 114 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGAT 6861 |||||| ||||||| ||||||||||||||| |||| Sbjct 115 CAGTGGGGAATATTGCACAATGGGCGAAAGCCTGAT 150 >seq59939 Length=800 Score = 93.3 bits (102), Expect = 1e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| |||||||| || || ||||| || | || || || || ||||| |||||| Sbjct 8 CCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 67 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| |||||||| ||| ||| |||||| ||||| | || || || | ||| Sbjct 68 TTGTCCTGGATCTTGGCCTTGACATTTTCGATTGTGTCACTAGGCTCAACCTCGAGGGTG 127 Query 225676 ATCGTCTTGCCCGT 225689 || ||||||||||| Sbjct 128 ATGGTCTTGCCCGT 141 >seq312118 Length=428 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/100 (82%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| |||||||| |||| ||| ||||| | |||| ||| | || ||| | ||||| Sbjct 286 TGAGAGGATGATCAGTCACACTGGAACTGAGACACGGTCCA-GACTCCTACGGGAGGCAG 344 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 |||||| ||||||| |||||||||||||||| ||||| || Sbjct 345 CAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAG 384 >seq59938 Length=2926 Score = 86.0 bits (94), Expect = 1e-11 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| || |||| ||||| || || |||| ||||| | | || | ||||| Sbjct 2726 CAGGACCAGACGGAGGGTGGACTCCTTCTGGATGTTGTATAGAG--AGGGTGCGGCCATC 2783 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| || || ||||| || | || || || || ||||| ||||||||||| Sbjct 2784 TTCCGAATGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 2843 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| ||| |||||||| || || || || | ||||| || Sbjct 2844 CTGGATCTTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGT 2903 Query 225681 CTTGCCCGT 225689 |||||| || Sbjct 2904 CTTGCCAGT 2912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1184501894138388