Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_031011.1 Length=168993 Score E Sequences producing significant alignments: (Bits) Value seq449735 158 1e-33 seq506238 138 1e-27 seq351952 105 7e-18 seq511551 95.1 1e-14 seq487923 95.1 1e-14 seq509673 87.8 2e-12 seq326422 84.2 2e-11 >seq449735 Length=3187 Score = 158 bits (174), Expect = 1e-33 Identities = 488/742 (66%), Gaps = 25/742 (3%) Strand=Plus/Minus Query 37875 TTTGTTGGAATAGCAATTTCACAGCACAAGTTACTCTGACGAATAGGTGCCTTTTCACGA 37934 || ||||| | |||||||| | || || ||| || |||||||||||| || | | Sbjct 755 TTAGTTGGTAATGCAATTTCTAAACATAAATTAGATTGGCGAATAGGTGCCACTTTAGCA 696 Query 37935 ATAAACGGAGTATAGTTATTCGTATTATCAATGAACTGTACATAAATTCTTGCTGTTCCT 37994 || ||||| | | |||| | |||| | |||| ||||| | | || | | Sbjct 695 ATGAACGGGCTGTGCGTATTACAGTGGTCAACGTTTTGTAAGTAAATACGACCGGTACTT 636 Query 37995 GAGCGTTCAGTCATGAGCAA---TTCA-AATAGTTCACGGGCTTTAATACGCTTTTTACG 38050 | ||||| || |||| || | || |||||| |||||||| || |||||||| Sbjct 635 GCACGTTCT----TGCGCAAACATTGAGAACAGTTCAATAGCTTTAATGCGTTTTTTACG 580 Query 38051 AAT--ATTAGGGACTTTTTCTGCTGCTTCGCATAATTCACGG-AAACGGCT-TTGGTCTT 38106 ||| ||| | ||| ||| | || ||||| | || |||| | |||||||| Sbjct 579 AATTGATTCGT--CTTGTTCGTAT--TTTACATAAAGCGCGTCAAACTCGTCTTGGTCTT 524 Query 38107 TAAAATAAGAATAATAAAGCTCGCCACCCATTTAATGTGGACTGAACAAAGTAATGTAAT 38166 |||| | | || ||||| ||| || | | || || ||||| |||||||| | Sbjct 523 CAAAAAATGCATCGTAAAG---GCCTGGCACATCAGAGGGGCTAAACAAGGTAATGTAGT 467 Query 38167 CGTTCTTTCCGAATCGTTCCATCATCAAATCATTCAGTTGAACACCATAATCCATATGAC 38226 ||| || || || ||| | | ||| | || || || ||||| | ||||| Sbjct 466 CGTCTTTAATTAAACGCGAGTACATTAGTTTATTAAACTGTACGCCGTAATCTAAATGAC 407 Query 38227 GAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCA 38286 | | |||||| || || || || ||||||||| | || | || ||||| ||||| | Sbjct 406 GCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAGTACTAACAGGTTTTCTACTTCTA 347 Query 38287 AATGCCAAATAGGATA--ATAAGCAGTAGCAGCGCCGCCACGAATTCCGCCCTGTGAACA 38344 ||||||||| || || | ||| || || ||||||||||| | ||||| || ||||| Sbjct 346 AATGCCAAAGCGGGTAGAACAAG--GTTGCTGCGCCGCCACGTACACCGCCTTGCGAACA 289 Query 38345 TGAGTTAACTGCAGCCTGAAAATGTTTCCAAAAAGGAATAACACCAGGATGGCATACATC 38404 ||||| || | ||||| || || ||||||||||| ||| | |||| | | || Sbjct 288 GCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAATACAACCCGTATGGTACGCTTC 229 Query 38405 ACCCATGCCAATCTCAGAACCTTCGGCACGAATCATACCAACGTTAATACCAATTCCAGC 38464 || ||| ||| | ||| |||||||| ||| ||||||| ||||| || || Sbjct 228 GCCATTGCGAATGTGGCTACCCAGTGCACGAATGCGACCTGCGTTAATGCCAATGCCGGC 169 Query 38465 GCGTTTAGAGATATATTCAACAATTGAAGCGGAAGCCTTATTGATAGACTTCAATG-AAT 38523 |||| || | |||| |||||||| || || | || || || |||| | | Sbjct 168 ACGTTGCGATACGTATTTAACAATTGCAGACGAGGTGGCGTTAATTGA-ATCAAGGCTGT 110 Query 38524 CACCTGCCTCAATAACAACACATGAACTAAACTGTCGAGTCGGAGTACGGCAACCAGCCA 38583 | || ||| || | ||||| || |||||||| || || || ||||| ||| |||| Sbjct 109 CGCCACACTCTATTAATACACACGAGCTAAACTGGCGTGTTGGCGTACGAACACCTGCCA 50 Query 38584 TAATAGGAGTTGGCAATGAAAT 38605 |||| || || || | |||||| Sbjct 49 TAATTGGCGTAGGTAGTGAAAT 28 >seq506238 Length=275 Score = 138 bits (152), Expect = 1e-27 Identities = 141/184 (77%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 126777 ATTACAAACTCTCGGTAAAGGTACGAGCGATAACATCGCGCTGCTGTTCCGGAGTCAGAG 126836 ||||||| | || ||||| ||||| | | || || |||| ||||| || || | | Sbjct 38 ATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATG 97 Query 126837 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 126896 ||||||| || ||||| ||||| |||||||| || || | || ||||||||||| || | Sbjct 98 AGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGT 157 Query 126897 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 126956 | ||||| |||||||||| ||||||||||| | || || ||||| | |||||||||| Sbjct 158 GTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCAC 217 Query 126957 CTTC 126960 |||| Sbjct 218 CTTC 221 >seq351952 Length=416 Score = 105 bits (116), Expect = 7e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 126791 GTAAAGGTACGAGCGATAACATCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 126850 ||||||||||| | ||| ||||| ||| ||||| | ||| | |||||||| || ||| Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTACT 93 Query 126851 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 126910 || ||||| |||||||| || || | || ||||| || || |||| | | |||||| Sbjct 94 GCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATCC 153 Query 126911 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCA 126961 | ||||||| || || |||||||| | |||||||||||||||| Sbjct 154 AATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCA 204 >seq511551 Length=634 Score = 95.1 bits (104), Expect = 1e-14 Identities = 191/277 (69%), Gaps = 16/277 (6%) Strand=Plus/Minus Query 108296 CGAGGAAGATTCAGTGTTACAACACCAAGATTATTACGTCCATCAAGAATTTCATTACCA 108355 ||||| || || | |||| ||||| | || ||||||||||||| | ||| |||||| Sbjct 492 CGAGGTAGGTTTAAGCTTACCACACCTAAGTTGTTACGTCCATCAAACACTTCCTTACCA 433 Query 108356 GTCGAATCTTTCCATACGCTCAA--GAAACTACGGCAACCCATTGGAGAAACAGGAATAG 108413 | || ||||| |||| ||| | ||| || | ||| ||||| | || Sbjct 432 GAAGAGTCTTT--ATACTCTCCAAGGAAGCTCCTGCAGCCCATGCTTGCCT------TAA 381 Query 108414 ATGAACCAGTGATAGCTTTATTGTTCT--TAGCTGAAATAATATCAGGATACATTCTTTT 108471 | |||||| | || | | || | ||| ||| |||||||||| ||||| | || Sbjct 380 AACCACCAGTAACCTCTACAATCTTATCGTAGTTGA--TAATATCAGGGTACATACGCTT 323 Query 108472 GCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTTCGGATCGTCTT-TATAAAGAT 108530 || |||||||||||||| | ||| ||||||| |||||| || || || | | ||||| | Sbjct 322 ACTGGCACACTCTAGAGCTAACTGTTTAATATTATAGTTTGGGTCTTCCTGTTTAAAG-T 264 Query 108531 TAACACCTTCTTCAACAAACATAACAAGCTTAGGGAA 108567 | ||||| |||| || | | | |||||||||||| Sbjct 263 TGACACCGTCTTTAATAGTTAGGATAAGCTTAGGGAA 227 >seq487923 Length=1072 Score = 95.1 bits (104), Expect = 1e-14 Identities = 254/375 (68%), Gaps = 19/375 (5%) Strand=Plus/Minus Query 89645 ATACTAATTTATCTAGTACGTATTTTTGCCATGCATAATCATTACGGAATCCGAAAACCA 89704 ||| |||||||| || | || || |||||||| ||||||||| |||||||| || Sbjct 528 ATAGTAATTTATATA---CATACTTATGCCATGCTAAATCATTACCAAATCCGAATACTG 472 Query 89705 CGTCATTTGAACGCATGCTT-ACTAC-TGCATTGACTTTCTTGTCACGAATCAGATACT- 89761 ||||| ||| ||| || || || | | ||| | ||| || |||||||| | ||||| Sbjct 471 CGTCACATGAGCGC-TGATTGACAATATAGATTAA-TTTATTATCACGAATAA-ATACTT 415 Query 89762 GTACGGTATTCGTACACATGAAATCTGACATACCATCTTTATTGTAGTCAAACTGCATAG 89821 | || |||| ||||| || ||||||||||| ||| |||| | ||| || |||| Sbjct 414 GAACATTATTAGTACAAATAAAATCTGACATTTCATTAGTATTCCATTCACTTTGAATAG 355 Query 89822 ATGGACGAGTATAAATCATGATACCACGTCGAGAATCAGGATTTTGACCAAGTTCAGCT- 89880 | || | |||||||||||| || | || | || || || | | || ||| Sbjct 354 AAGGTCTAGTATAAATCATAATTGCTTTACGTGTATTTTTATCTTTAAGTAATT--GCTC 297 Query 89881 AGACACATA-TCATATTGAGCATAGTTATCTTCTGACCAGATAGCCCAACCATAATTCGA 89939 | | || | |||||||| || ||| | | | ||| |||||||||||| || Sbjct 296 ACGCGCAGACGCATATTGATAATTATTAGCAGCACTAAAAATACACCAACCATAATTTGA 237 Query 89940 GTTAATTTCACCTTTAGAAGATGCTACCTGCTGCCAAATCTTTGG---TGTTTCACCTGG 89996 |||||||| ||||| | || ||| | | |||||||||||| | | |||| Sbjct 236 GTTAATTTTACCTTCTGTGCTTGATACATCTTCCCAAATCTTTGGAATAGGTGCACC--- 180 Query 89997 AATATCTTTAACAAA 90011 |||||||| ||||| Sbjct 179 CATATCTTTTACAAA 165 >seq509673 Length=441 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 38205 TGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 38264 || || || |||||||||||||| | ||||| ||||| ||||| ||||||||||| Sbjct 228 TGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATTTTTCAGT 287 Query 38265 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 38324 || | | |||||||| |||||||| | || ||| | || || || |||||| Sbjct 288 ACCAATAATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGCACCGCCA 347 Query 38325 CGAATTCCGCCCTGTGAACATGAGTTAACTGCAGCCTGAAAATGTTTCCAAAAAGGAATA 38384 || | ||||| ||||| || | ||||| |||| || || |||| | || || ||| Sbjct 348 CGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAATGGGATA 407 Query 38385 ACACCAGGATG 38395 ||| | ||| Sbjct 408 CAACCCGTATG 418 >seq326422 Length=2068 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/114 (78%), Gaps = 4/114 (4%) Strand=Plus/Plus Query 134513 CGCTCTACCAAACTGAGCTACACGA--AGTAAATTAAATTTGAGCGGATAATGAGAATCG 134570 ||||||||||| |||||||| | | | | |||| | |||||| | | |||||| Sbjct 292 CGCTCTACCAA-CTGAGCTATATCAGCATCACCATAAACTGGAGCGGGCAGCGGGAATCG 350 Query 134571 AACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGC 134623 ||| | ||||||||| ||||||| ||||||||||| |||||||||||| |||| Sbjct 351 AACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537098194423760