Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_031020.1 Length=163201 Score E Sequences producing significant alignments: (Bits) Value seq449735 154 2e-32 seq351952 118 1e-21 seq155978 114 1e-20 seq427934 109 6e-19 seq484804 98.7 1e-15 seq511551 96.9 4e-15 seq458811 96.9 4e-15 seq506238 95.1 1e-14 seq24926 82.4 8e-11 >seq449735 Length=3187 Score = 154 bits (170), Expect = 2e-32 Identities = 333/491 (68%), Gaps = 8/491 (2%) Strand=Plus/Minus Query 139553 AAATATGCATCATACATACCTTCAACTTCATGCGGACTGAATAATGTGATATAGTCGTTT 139612 ||| ||||||| || | ||| || ||| || || || || || || ||||||| | Sbjct 521 AAAAATGCATCGTAAAGGCCTGGCACATCAGAGGGGCTAAACAAGGTAATGTAGTCGTCT 462 Query 139613 TTAATATAACGTTCGATCATTAAGTCATTAATCTGGACACCATAATCTAAATGACGAATA 139672 ||||| |||| | ||||| | ||||| ||| || || |||||||||||||| | Sbjct 461 TTAATTAAACGCGAGTACATTAGTTTATTAAACTGTACGCCGTAATCTAAATGACGCACG 402 Query 139673 CGGTTTTCATCGATACCTTTATTATTCTTCAGTACGATTAATTTTTCATATTCCAGATGC 139732 ||||| ||||| | || ||||| || ||||| | | ||||| ||| | |||| Sbjct 401 CGGTTGTCATCAACCCCGCGGTTATTTTTAAGTACTAACAGGTTTTCTACTTCTAAATGC 342 Query 139733 CACATCGGATAATATAATGTCGCCGCACCACCACGTACACCACCTTGTGAACATGATTTC 139792 || | ||| || | || || || || || ||||||||||| ||||| ||||| ||| Sbjct 341 CAAAGCGGGTAGAACAAGGTTGCTGCGCCGCCACGTACACCGCCTTGCGAACAGCTTTTA 282 Query 139793 ACTGATGCCTGATGAGT-TTTCCAGAATGGAATAACACCAGTGTG--ACGAACTTCGCCC 139849 || | || ||| ||| || | || |||||| ||| || || ||| ||||||| Sbjct 281 ACCGCTGTTTGA-AAGTGCTTATAAAAAGGAATACAACCCGTATGGTACG--CTTCGCCA 225 Query 139850 GCGCCAATTTTAGAACCTTCTGCACGATACATACCAGCATTAACACCAATACCAGCACGT 139909 || ||| | ||| ||||||| ||| || |||| ||||| || |||||| Sbjct 224 TTGCGAATGTGGCTACCCAGTGCACGAATGCGACCTGCGTTAATGCCAATGCCGGCACGT 165 Query 139910 TTACTGATGTACTTAATAA-TACATTCGTTTGTCTTGTTAATTGAATCCAGCGAATCACC 139968 | | ||| |||| || | || || || |||||||||||| || || || Sbjct 164 TGCGATACGTATTTAACAATTGCAGACG-AGGTGGCGTTAATTGAATCAAGGCTGTCGCC 106 Query 139969 GCCTTCAATAACAACACAAGAGCTAAACTGACGTGTCGGAGTTCTTACGCCCGCCATAAT 140028 | || || | ||||| ||||||||||| ||||| || || | || || |||||||| Sbjct 105 ACACTCTATTAATACACACGAGCTAAACTGGCGTGTTGGCGTACGAACACCTGCCATAAT 46 Query 140029 CGGAGTAGGTA 140039 || ||||||| Sbjct 45 TGGCGTAGGTA 35 >seq351952 Length=416 Score = 118 bits (130), Expect = 1e-21 Identities = 128/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 52720 GTAAATGTACGAGAAATTACATCACGCTGTTGTTCTTTGGTCAGGGAGTTAAAGCGAACA 52779 ||||| ||||| | |||||||| ||| ||||||| || | |||||||| || || Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTACT 93 Query 52780 GCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGGGTCTTCCATCGCTTCA 52839 || ||||| || ||||| || || || ||||| || || || | |||||| || || Sbjct 94 GCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATCC 153 Query 52840 AGCAACATTTCACGATTCATTACGTTAACGTTCAGGTGCTGACCGCCTTC 52889 | ||||||||||| |||||||| |||||||| | ||| ||||| ||||| Sbjct 154 AATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTC 203 >seq155978 Length=1540 Score = 114 bits (126), Expect = 1e-20 Identities = 256/377 (68%), Gaps = 7/377 (2%) Strand=Plus/Minus Query 142354 GTATCATGTACTAAAGAAAAAGTATATGTGTGTACGCATGAACGTAAACATCCTAATTCA 142413 || ||| || ||| ||||| || | ||||| | ||| | |||||||| || | ||| Sbjct 1472 GTGTCACCTAATAATGAAAACGTGTGCGTGTGCATGCACGGGCGTAAACAGCCAAGCTCA 1413 Query 142414 ATTTCACCAGGGTTCCAGTAAGAAAGAATTTCACCACGATCGTCGATACCCGCTGACAGG 142473 | ||| || ||||| | || || |||||||| |||||||| ||||| | | | Sbjct 1412 AATTCGCCTGGGTTGTAAAAACTAATTATTTCACCGCGATCGTCTATACCATTTTTTAAG 1353 Query 142474 TT-TTCATAGATTTTACGAAGTTGATCGAC--TTCA-CCATTAGGACCAACCCAATGTCT 142529 || || || |||| | | |||| || | || | |||| || | |||| | Sbjct 1352 TTATTAATTACTTTTGCTA-GTTGGTCTAGCGTTGAGCCATCTGGGCGCTGCCAAGCACG 1294 Query 142530 GCCCTGTACACCATAAACCCGGCCCATATCGTCTTCACCTTTACGATTTGGGTTTTTTAA 142589 || ||||| |||||||| |||||||| ||||| ||||||||||| | || || || | Sbjct 1293 CCCTTGTACGCCATAAACACGGCCCATGTCGTCCTCACCTTTACGGTGCGGATTATTAAG 1234 Query 142590 CCATGCTTCATTCTCATTGGCATTAGCATTCCAAGTATTTGTACCAAGTGCCCGGAAATC 142649 ||| || ||| || || || || |||| ||| || || || | | | || || | Sbjct 1233 CCAAGCGCTATTTTCGTTTGCGTTTGCATCCCAGGTTTTACAGCCTATTTCGCGAAACTG 1174 Query 142650 TGCTGC-AGACGACAGACCACGAATATAACCCAGCAGTTCGGCAATGGATGCTTTATAAA 142708 ||| || | || ||||| | ||||| || | ||||||||| | |||||| ||| Sbjct 1173 TGCCGCGCTATCGTAG-CCACGCAAGTAACCGAGTAATTCGGCAATAGCTGCTTTGTAAT 1115 Query 142709 AACTTTTACGAGTGGTG 142725 | |||||||| |||||| Sbjct 1114 AGCTTTTACGTGTGGTG 1098 >seq427934 Length=2050 Score = 109 bits (120), Expect = 6e-19 Identities = 472/730 (65%), Gaps = 21/730 (3%) Strand=Plus/Minus Query 142024 ACACTG--AATGGGTATTTAATTGGTTCGTGGTGTTGGTAGTTAACGATTTTAAAGTCAT 142081 |||||| || ||||||||||| | ||||| ||||| || | | | ||||||||| Sbjct 1538 ACACTGCGAAAGGGTATTTAATCGCATCGTGATGTTGATAATCTTCAACGCTAAAGTCAT 1479 Query 142082 CTGTGGTAACCCATGTCTCAACATCTTCCAGAGACTTGATGTTAGGGTTAATAATTAGTT 142141 | ||| ||||| || || | |||| || | || || || || || || ||||| | Sbjct 1478 CCAAGGTTACCCAAGTTTCGATGTCTTTTAGGGTTTTAATTTTTGGATTGATGATTAGCT 1419 Query 142142 GAGGCTCGTCAAAG-GGCTCACGGGAGATCTGTGTCGGCAC-CATAGGT---AATTGGTC 142196 |||| |||| || || || | || ||| | | | | ||| ||| | |||||| Sbjct 1418 TAGGCGATGCAAAACGGTTCGCGCGCGAGCTG-GACATCCCGCATGGGTTCAAGTTGGTC 1360 Query 142197 TTCATAGATATGTGCGTTCACAATCTTATAGAACATTTTACCTGGCTTGTTCCGGGTGAT 142256 ||| || ||||| || || || ||||||| | | ||||| || || | | || || Sbjct 1359 TTCGTAAATATGAGCATTGACTATCTTATGGTATGCCTTACCAGGTTTATGGCCAGTAAT 1300 Query 142257 TTGAGCCATCAGATGCAGG-AATGTATACGCCTGGATTAAATCAAAGTTCAATCCTAATG 142315 || ||||| | | ||| | ||| ||| | || | | | ||||| || |||| | Sbjct 1299 CTGGGCCATTA-ACGCAAGTAATACATATACTTGTACCATGTTGAAGTTTAACCCTAGCG 1241 Query 142316 GAACATCCGCCGAACGTTGATAAACGGTCACATGCAAAGTATCATGTACTAAAGAAAAAG 142375 ||||||| || || | | | | |||||||||| | ||| |||||| Sbjct 1240 GAACATCACAACTGCGCTGTGTGCTGTTGAGGTACAAAGTATCACCGAGTAATGAAAAAT 1181 Query 142376 TATATGTGTGTACGCATGAACGTAAACATCCTAATTCAATTTCACCAGGGTTCCAGTAAG 142435 | | || | |||| || || || ||||| |||| | | ||||| | || | | Sbjct 1180 GGTGTTCGTACATACATGGTCGCAAGCAACCTAAGTCAAATGCTCCAGGATGAAAGAAGG 1121 Query 142436 AAAGAATTTCACCACGATCGTCGATACCCG--CTGACAGGTTTTCATAGATTTTACGAAG 142493 | ||| ||||| || | || ||||| |||| ||| || ||||| | || Sbjct 1120 TTAAAATCTCACCGCGGTTATCTATACCATTACTGA--GGTCGTCGACGATTTGTTGCAG 1063 Query 142494 TTGATCGACTT---CACCATTAGGACCAACCCAATGTCTGCCCTGTA-CACCATAAACCC 142549 | |||||| | |||||| ||| | |||| ||||| | || || | | Sbjct 1062 TAAATCGACATGACCACCATCAGG-CTTTGGAAATGCACGCCCTAACGCCCCGTATATCA 1004 Query 142550 GGCCCATATCGTCTTCACCTTTACGATTTGGGTTTTTTAACCATGCTTCATTCTCATTGG 142609 | |||||||| || |||||||||||||||||| | || |||||||| || ||||||| Sbjct 1003 GCCCCATATCATCAGGACCTTTACGATTTGGGTTATCTAGCCATGCTTGGTTTTCATTGG 944 Query 142610 CATTAGCATTCCAAGTATTTGTACCAAGTGCCCGGAAATCTGCTGCA-GACGACAGACCA 142668 | || || | ||| || || || || | || | ||||| || ||| | || ||| Sbjct 943 CGTTGGCGTCCCATGTTTTAGTGCCTAAAGCTCTAAAATCGGCCGCATTTTGGTAG-CCA 885 Query 142669 CGAATATAACCCAGCAGTTCGGCAATGGATGCTTTATAAAAACTTTTACGAGTGGTGTCT 142728 || | ||| || | | ||||| |||| | || | || |||||||| ||||| || Sbjct 884 CGTAAATATCCTAAGATCTCGGCTATGGCAGACTTCCAGAAGCTTTTACGTGTGGTCACT 825 Query 142729 AATGGACATT 142738 || ||| ||| Sbjct 824 AAAGGAAATT 815 >seq484804 Length=980 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 142540 CCATAAACCCGGCCCATATCGTCTTCACCTTTACGATTTGGGTTTTTTAACCATGCTTCA 142599 || ||||| || |||||||| ||||||||||| || | ||| || | ||| || ||| Sbjct 112 CCGTAAACGCGCCCCATATCATCTTCACCTTTGCGGTGAATGTTATTAAGCCAAGCATCA 171 Query 142600 TTCTCATTGGCATTAGCATTCCAAGTATTTGTACCAAGTGCCCGGAAATCTGCTGCAGAC 142659 || |||||||||||||| ||| || || ||||| ||| || ||||| || ||| Sbjct 172 TTTAAATTGGCATTAGCATCCCAGGTTTTAGTACCTAGTTTACGAAAATCAGCGGCA-TT 230 Query 142660 GACA-GACCACGAATATAACCCAGCAGTTCGGCAATGGATGCTTTATAAAAACTTTTACG 142718 | || |||||| |||||||| | | || ||||| | || || |||| || ||||| Sbjct 231 GTCATAACCACGGATATAACCAATAAACTCAGCAATCGCTGACTTGAAAAAGCTCTTACG 290 Query 142719 AGTGGTGTCTAATGGA 142734 || || ||||||| Sbjct 291 CGTAGTTATTAATGGA 306 >seq511551 Length=634 Score = 96.9 bits (106), Expect = 4e-15 Identities = 219/327 (67%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 37674 ATGATGTCCGGGTACATTCGTTTGGATGAACATTCAAGAGCCAATCGTTTAATTGCATAA 37733 || || || |||||||| || || | ||| || ||||| || ||||||| ||| Sbjct 345 ATAATATCAGGGTACATACGCTTACTGGCACACTCTAGAGCTAACTGTTTAATATTATAG 286 Query 37734 CCAGGATCTCCCGGATTAAGGTTAATACCTTCTTCGATAAACATAACCAGTTTAGGGAAG 37793 || ||| || | |||| ||| | ||| |||| ||| | | || |||||||| Sbjct 285 TTTGGGTCTTCCTGTTTAAAGTTGACACCGTCTTTAATAGTTAGGATAAGCTTAGGGAAT 226 Query 37794 ATTGCAGTGATTTTATTTTTACCAAGACCTTTAATTCTGTTTTCGAGAATTGATTTCTGA 37853 | || || | || | ||| | |||||||| | || || || ||||||||| Sbjct 225 ACCGCTGTCCTCTTTGATGCACCTAAGCCTTTAATACGCACCTCAAGGATGGATTTCTGA 166 Query 37854 ATTAACTGAGATTCCCAGGATGTACCAGTACCAAATGAAACAGTGACAAAAGGTG-TTTG 37912 |||| || ||| ||||| | ||||| |||||| || || |||||||| | |||| Sbjct 165 ATTAGCTTAGACTCCCAACAAGTACCTAAACCAAAACCTACCGT-ACAAAAGGGGCTTTG 107 Query 37913 TCCATTCGAGCTGAATAATGTGTTAATTTCGTATTCATATGCCTGGAATGAATCGTATAC 37972 |||||| | || ||| |||||||||||||| ||| ||||| | ||| || Sbjct 106 TCCATTTGCTGTGTGTAAGGTGTTAATTTCGTACTCAAGACTTTGGAAAGCATCATAAGT 47 Query 37973 TTCTTTTTCTGTTTTCTTTATAGCATA 37999 ||||| ||||| |||| | ||||| Sbjct 46 CTCTTTCTCTGTCATCTTCGTTGCATA 20 >seq458811 Length=383 Score = 96.9 bits (106), Expect = 4e-15 Identities = 81/99 (82%), Gaps = 4/99 (4%) Strand=Plus/Plus Query 66383 TTTACTCGTTTTAAATAAAATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTT 66442 |||||| ||||| || |||| ||||| ||||||||||||| |||||||| ||| Sbjct 32 TTTACTTGTTTTCAA----ATGGTGCACCCAGAAGGATTCGAACCTTCGACCTACGCCTT 87 Query 66443 AGAAGGCCGTTGCTCTATCCAGCTGAGCTAAGAGTGCAT 66481 |||||| ||||||||||||||||||||||| | | |||| Sbjct 88 AGAAGGGCGTTGCTCTATCCAGCTGAGCTATGGGCGCAT 126 >seq506238 Length=275 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 52708 TACATAGCTTCAGTAAATGTACGAGAAATTACATCACGCTGTTGTTCTTTGGTCAGGGAG 52767 |||| | ||| ||||||||||| | | ||| || ||||||||||| || | ||| Sbjct 40 TACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATGAG 99 Query 52768 TTAAAGCGAACAGCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGGGTCT 52827 ||||| || || || ||||| || ||||| ||||| || ||||| |||||| ||||| | Sbjct 100 TTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGTGT 159 Query 52828 TCCATCGCTTCAAGCAACATTTCACGATTCATTACGTTAACGTTCAGGTGCTGACCGCCT 52887 | | || || ||| |||||||| | || || ||||| | || ||||| ||| Sbjct 160 TTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCACCT 219 Query 52888 TC 52889 || Sbjct 220 TC 221 >seq24926 Length=5984 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 66400 AAATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTA 66459 |||||| ||||| ||||||||||||||| |||| | ||||||||||| | ||||||| Sbjct 5840 AAATGGTGCACCCGGCAGGATTCGAACCTGCGACCACCCGCTTAGAAGGCGGGTGCTCTA 5781 Query 66460 TCCAGCTGAGCTA 66472 |||| |||||||| Sbjct 5780 TCCAACTGAGCTA 5768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518685542727120