Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_031030.1 Length=170788 Score E Sequences producing significant alignments: (Bits) Value seq449735 170 2e-37 seq487923 111 2e-19 seq506238 100 3e-16 seq509673 96.9 4e-15 seq326422 89.7 6e-13 seq510909 86.0 7e-12 >seq449735 Length=3187 Score = 170 bits (188), Expect = 2e-37 Identities = 403/596 (68%), Gaps = 21/596 (4%) Strand=Plus/Minus Query 139296 AATAGTTCACGGGCTTTAATACGCTTTTTACGAAT--ATTAGGGTCTTTTTCTGCTGCTT 139353 || |||||| |||||||| || ||||||||||| ||| | |||| ||| | | Sbjct 611 AACAGTTCAATAGCTTTAATGCGTTTTTTACGAATTGATTCG--TCTTGTTCGTATTTTA 554 Query 139354 CGTATAATTCACGG-AAACG-GTCTTGGTCTTTAAAATAAGAATAATAAAGCTCGCCACC 139411 | |||| | || |||| ||||||||||| |||| | | || ||||| ||| Sbjct 553 C--ATAAAGCGCGTCAAACTCGTCTTGGTCTTCAAAAAATGCATCGTAAAG---GCCTGG 499 Query 139412 CATTTCATGTGGACTGAACAAAGTAATATAATCGTTCTTTCCGAATCGTTCCATCATCAA 139471 || ||| || || ||||| ||||| || |||| || || || ||| | Sbjct 498 CACATCAGAGGGGCTAAACAAGGTAATGTAGTCGTCTTTAATTAAACGCGAGTACATTAG 439 Query 139472 ATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTT 139531 | ||| | || || || ||||| | |||||| | |||||| || || || || ||| Sbjct 438 TTTATTAAACTGTACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTT 379 Query 139532 ATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATA--ATAAGCAGTA 139589 |||||| | || | || ||||| ||||| |||||||||| || || | ||| || Sbjct 378 ATTTTTAAGTACTAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAG--GTT 321 Query 139590 GCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTC 139649 || ||||||||||| | || || || ||||| |||||| || || ||||| || || Sbjct 320 GCTGCGCCGCCACGTACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTA 261 Query 139650 CAAAAAGGAATAACACCAGTATG--ACGTACTTCACCCATGCCAATTTTAGAACCTTCAG 139707 ||||||||||| ||| ||||| ||| |||| || ||| ||| | ||| | Sbjct 260 TAAAAAGGAATACAACCCGTATGGTACG--CTTCGCCATTGCGAATGTGGCTACCCAGTG 203 Query 139708 CACGAATCATACCAACATTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTG 139767 ||||||| ||| | ||||| ||||| || || |||| || | |||| |||||||| Sbjct 202 CACGAATGCGACCTGCGTTAATGCCAATGCCGGCACGTTGCGATACGTATTTAACAATTG 143 Query 139768 AAGCGGAAGCCTTATTGATAGACTTCAATG-AATCTCCTGCCTCAATAACGACGCATGAA 139826 || || | || || || |||| | || || ||| || | || || || Sbjct 142 CAGACGAGGTGGCGTTAATTGA-ATCAAGGCTGTCGCCACACTCTATTAATACACACGAG 84 Query 139827 CTAAACTGCCGAGTTGGAGTACGACAGCCAGCCATAATAGGAGTTGGTAATGAAAT 139882 |||||||| || ||||| |||||| || |||||||| || || |||| |||||| Sbjct 83 CTAAACTGGCGTGTTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAGTGAAAT 28 >seq487923 Length=1072 Score = 111 bits (122), Expect = 2e-19 Identities = 298/442 (67%), Gaps = 19/442 (4%) Strand=Plus/Minus Query 23338 ATACTAATTTATCTAATACGTATTTTTGCCATGCATAATCATTACGGAATCCGAAGACCA 23397 ||| |||||||| |||| || || |||||||| ||||||||| |||||||| || Sbjct 528 ATAGTAATTTAT---ATACATACTTATGCCATGCTAAATCATTACCAAATCCGAATACTG 472 Query 23398 CGTCATTTGAGCGCATGCTT-ACTAC-TGCATTGACTTTCTTATCACGAATCAGGTACT- 23454 ||||| ||||||| || || || | | ||| | ||| ||||||||||| | |||| Sbjct 471 CGTCACATGAGCGC-TGATTGACAATATAGATTAA-TTTATTATCACGAATAAA-TACTT 415 Query 23455 GTACTGTATTAGTACACATGAAATCTGACATACCATCTTTATTGTAGTCAAATTGCATGG 23514 | || |||||||||| || ||||||||||| ||| |||| | ||| ||| || | Sbjct 414 GAACATTATTAGTACAAATAAAATCTGACATTTCATTAGTATTCCATTCACTTTGAATAG 355 Query 23515 ATGGACGAGTATAAATCATGATACCACGTCGAGAATCAGGATTTTGACCAAGTTCAGCT- 23573 | || | |||||||||||| || | || | || || || | | || ||| Sbjct 354 AAGGTCTAGTATAAATCATAATTGCTTTACGTGTATTTTTATCTTTAAGTAATT--GCTC 297 Query 23574 AAACACATA-TCATATTGAGCATAGTTATCTTCTGACCAAATAGCCCAACCATAATTCGA 23632 | | || | |||||||| || ||| | | ||||| |||||||||||| || Sbjct 296 ACGCGCAGACGCATATTGATAATTATTAGCAGCACTAAAAATACACCAACCATAATTTGA 237 Query 23633 GTTAATTTCGCCTTTAGAAGATGCTACCTGCTGCCAAATCTTTGG---TGTTTCACCTGG 23689 |||||||| |||| | || ||| | | |||||||||||| | | |||| Sbjct 236 GTTAATTTTACCTTCTGTGCTTGATACATCTTCCCAAATCTTTGGAATAGGTGCACC--- 180 Query 23690 AATATCTTTAACAAACAAGCTCTTAGATTTATACCATTCAAGTTCACGCTGAATGTATTC 23749 |||||||| ||||| | | ||| ||||||| | ||| | |||| ||||| Sbjct 179 CATATCTTTTACAAATAGTGATTGAGAACGATACCATAATAATTCTTTCCGAATATATTC 120 Query 23750 ATCATTAAGAGCACCAAAAATA 23771 | |||| | ||| |||||| Sbjct 119 TTTATTAGGCTCACGTAAAATA 98 >seq506238 Length=275 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 60708 ATTACAAACTCTTGGTGAATGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 60767 ||||||| | | || |||||||| | | ||||| |||| ||||| || || | | Sbjct 38 ATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATG 97 Query 60768 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 60827 ||||||| || ||||| ||||| |||||||| || || | || ||||||||||| || | Sbjct 98 AGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGT 157 Query 60828 GCTTAACTGCATCTTCCA 60845 | ||||| |||||||||| Sbjct 158 GTTTAACAGCATCTTCCA 175 >seq509673 Length=441 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 139482 TGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 139541 || || || |||||||||||||| | ||||| ||||| ||||| ||||||||||| Sbjct 228 TGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATTTTTCAGT 287 Query 139542 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 139601 || | | |||||||| |||||||| | || ||| | || || || |||||| Sbjct 288 ACCAATAATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGCACCGCCA 347 Query 139602 CGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAATA 139661 || | || || ||||| || ||||||| ||||| || || |||| | || || ||| Sbjct 348 CGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAATGGGATA 407 Query 139662 ACACCAGTATG 139672 ||| ||||| Sbjct 408 CAACCCGTATG 418 >seq326422 Length=2068 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/115 (79%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 69864 GCGCTCTACCAAACTGAGCTACAC--GGAGTAAATTAAATTGGAGCGGATAATGAGAATC 69921 |||||||||||| |||||||| | | | | |||| |||||||| | | ||||| Sbjct 291 GCGCTCTACCAA-CTGAGCTATATCAGCATCACCATAAACTGGAGCGGGCAGCGGGAATC 349 Query 69922 GAACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GCCATTATACGATATCCGC 69975 |||| | ||||||||| ||||||| |||||||||| ||||||||||||| |||| Sbjct 350 GAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 404 >seq510909 Length=431 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 60710 TACAAACTCTTGGTGAATGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAG 60769 |||| ||| || || |||||||||| || ||||| ||||||| || ||||| || | Sbjct 339 TACATACTTTTAGTAAATGTACGAGTAATCACGTCTTGCTGCTGCTCAGGAGTGAGCGCA 398 Query 60770 TTAAAGCGAACTGCATAACCGGATACACGGAT 60801 ||||||||||| |||||||| |||||||| || Sbjct 399 TTAAAGCGAACGGCATAACCCGATACACGAAT 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542804463380160