Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_031030.1
Length=170788
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 170 2e-37
seq487923 111 2e-19
seq506238 100 3e-16
seq509673 96.9 4e-15
seq326422 89.7 6e-13
seq510909 86.0 7e-12
>seq449735
Length=3187
Score = 170 bits (188), Expect = 2e-37
Identities = 403/596 (68%), Gaps = 21/596 (4%)
Strand=Plus/Minus
Query 139296 AATAGTTCACGGGCTTTAATACGCTTTTTACGAAT--ATTAGGGTCTTTTTCTGCTGCTT 139353
|| |||||| |||||||| || ||||||||||| ||| | |||| ||| | |
Sbjct 611 AACAGTTCAATAGCTTTAATGCGTTTTTTACGAATTGATTCG--TCTTGTTCGTATTTTA 554
Query 139354 CGTATAATTCACGG-AAACG-GTCTTGGTCTTTAAAATAAGAATAATAAAGCTCGCCACC 139411
| |||| | || |||| ||||||||||| |||| | | || ||||| |||
Sbjct 553 C--ATAAAGCGCGTCAAACTCGTCTTGGTCTTCAAAAAATGCATCGTAAAG---GCCTGG 499
Query 139412 CATTTCATGTGGACTGAACAAAGTAATATAATCGTTCTTTCCGAATCGTTCCATCATCAA 139471
|| ||| || || ||||| ||||| || |||| || || || ||| |
Sbjct 498 CACATCAGAGGGGCTAAACAAGGTAATGTAGTCGTCTTTAATTAAACGCGAGTACATTAG 439
Query 139472 ATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTT 139531
| ||| | || || || ||||| | |||||| | |||||| || || || || |||
Sbjct 438 TTTATTAAACTGTACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTT 379
Query 139532 ATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATA--ATAAGCAGTA 139589
|||||| | || | || ||||| ||||| |||||||||| || || | ||| ||
Sbjct 378 ATTTTTAAGTACTAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAG--GTT 321
Query 139590 GCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTC 139649
|| ||||||||||| | || || || ||||| |||||| || || ||||| || ||
Sbjct 320 GCTGCGCCGCCACGTACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTA 261
Query 139650 CAAAAAGGAATAACACCAGTATG--ACGTACTTCACCCATGCCAATTTTAGAACCTTCAG 139707
||||||||||| ||| ||||| ||| |||| || ||| ||| | ||| |
Sbjct 260 TAAAAAGGAATACAACCCGTATGGTACG--CTTCGCCATTGCGAATGTGGCTACCCAGTG 203
Query 139708 CACGAATCATACCAACATTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTG 139767
||||||| ||| | ||||| ||||| || || |||| || | |||| ||||||||
Sbjct 202 CACGAATGCGACCTGCGTTAATGCCAATGCCGGCACGTTGCGATACGTATTTAACAATTG 143
Query 139768 AAGCGGAAGCCTTATTGATAGACTTCAATG-AATCTCCTGCCTCAATAACGACGCATGAA 139826
|| || | || || || |||| | || || ||| || | || || ||
Sbjct 142 CAGACGAGGTGGCGTTAATTGA-ATCAAGGCTGTCGCCACACTCTATTAATACACACGAG 84
Query 139827 CTAAACTGCCGAGTTGGAGTACGACAGCCAGCCATAATAGGAGTTGGTAATGAAAT 139882
|||||||| || ||||| |||||| || |||||||| || || |||| ||||||
Sbjct 83 CTAAACTGGCGTGTTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAGTGAAAT 28
>seq487923
Length=1072
Score = 111 bits (122), Expect = 2e-19
Identities = 298/442 (67%), Gaps = 19/442 (4%)
Strand=Plus/Minus
Query 23338 ATACTAATTTATCTAATACGTATTTTTGCCATGCATAATCATTACGGAATCCGAAGACCA 23397
||| |||||||| |||| || || |||||||| ||||||||| |||||||| ||
Sbjct 528 ATAGTAATTTAT---ATACATACTTATGCCATGCTAAATCATTACCAAATCCGAATACTG 472
Query 23398 CGTCATTTGAGCGCATGCTT-ACTAC-TGCATTGACTTTCTTATCACGAATCAGGTACT- 23454
||||| ||||||| || || || | | ||| | ||| ||||||||||| | ||||
Sbjct 471 CGTCACATGAGCGC-TGATTGACAATATAGATTAA-TTTATTATCACGAATAAA-TACTT 415
Query 23455 GTACTGTATTAGTACACATGAAATCTGACATACCATCTTTATTGTAGTCAAATTGCATGG 23514
| || |||||||||| || ||||||||||| ||| |||| | ||| ||| || |
Sbjct 414 GAACATTATTAGTACAAATAAAATCTGACATTTCATTAGTATTCCATTCACTTTGAATAG 355
Query 23515 ATGGACGAGTATAAATCATGATACCACGTCGAGAATCAGGATTTTGACCAAGTTCAGCT- 23573
| || | |||||||||||| || | || | || || || | | || |||
Sbjct 354 AAGGTCTAGTATAAATCATAATTGCTTTACGTGTATTTTTATCTTTAAGTAATT--GCTC 297
Query 23574 AAACACATA-TCATATTGAGCATAGTTATCTTCTGACCAAATAGCCCAACCATAATTCGA 23632
| | || | |||||||| || ||| | | ||||| |||||||||||| ||
Sbjct 296 ACGCGCAGACGCATATTGATAATTATTAGCAGCACTAAAAATACACCAACCATAATTTGA 237
Query 23633 GTTAATTTCGCCTTTAGAAGATGCTACCTGCTGCCAAATCTTTGG---TGTTTCACCTGG 23689
|||||||| |||| | || ||| | | |||||||||||| | | ||||
Sbjct 236 GTTAATTTTACCTTCTGTGCTTGATACATCTTCCCAAATCTTTGGAATAGGTGCACC--- 180
Query 23690 AATATCTTTAACAAACAAGCTCTTAGATTTATACCATTCAAGTTCACGCTGAATGTATTC 23749
|||||||| ||||| | | ||| ||||||| | ||| | |||| |||||
Sbjct 179 CATATCTTTTACAAATAGTGATTGAGAACGATACCATAATAATTCTTTCCGAATATATTC 120
Query 23750 ATCATTAAGAGCACCAAAAATA 23771
| |||| | ||| ||||||
Sbjct 119 TTTATTAGGCTCACGTAAAATA 98
>seq506238
Length=275
Score = 100 bits (110), Expect = 3e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 60708 ATTACAAACTCTTGGTGAATGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 60767
||||||| | | || |||||||| | | ||||| |||| ||||| || || | |
Sbjct 38 ATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATG 97
Query 60768 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 60827
||||||| || ||||| ||||| |||||||| || || | || ||||||||||| || |
Sbjct 98 AGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGT 157
Query 60828 GCTTAACTGCATCTTCCA 60845
| ||||| ||||||||||
Sbjct 158 GTTTAACAGCATCTTCCA 175
>seq509673
Length=441
Score = 96.9 bits (106), Expect = 4e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 139482 TGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 139541
|| || || |||||||||||||| | ||||| ||||| ||||| |||||||||||
Sbjct 228 TGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATTTTTCAGT 287
Query 139542 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 139601
|| | | |||||||| |||||||| | || ||| | || || || ||||||
Sbjct 288 ACCAATAATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGCACCGCCA 347
Query 139602 CGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAATA 139661
|| | || || ||||| || ||||||| ||||| || || |||| | || || |||
Sbjct 348 CGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAATGGGATA 407
Query 139662 ACACCAGTATG 139672
||| |||||
Sbjct 408 CAACCCGTATG 418
>seq326422
Length=2068
Score = 89.7 bits (98), Expect = 6e-13
Identities = 91/115 (79%), Gaps = 4/115 (3%)
Strand=Plus/Plus
Query 69864 GCGCTCTACCAAACTGAGCTACAC--GGAGTAAATTAAATTGGAGCGGATAATGAGAATC 69921
|||||||||||| |||||||| | | | | |||| |||||||| | | |||||
Sbjct 291 GCGCTCTACCAA-CTGAGCTATATCAGCATCACCATAAACTGGAGCGGGCAGCGGGAATC 349
Query 69922 GAACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GCCATTATACGATATCCGC 69975
|||| | ||||||||| ||||||| |||||||||| ||||||||||||| ||||
Sbjct 350 GAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 404
>seq510909
Length=431
Score = 86.0 bits (94), Expect = 7e-12
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 60710 TACAAACTCTTGGTGAATGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAG 60769
|||| ||| || || |||||||||| || ||||| ||||||| || ||||| || |
Sbjct 339 TACATACTTTTAGTAAATGTACGAGTAATCACGTCTTGCTGCTGCTCAGGAGTGAGCGCA 398
Query 60770 TTAAAGCGAACTGCATAACCGGATACACGGAT 60801
||||||||||| |||||||| |||||||| ||
Sbjct 399 TTAAAGCGAACGGCATAACCCGATACACGAAT 430
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 542804463380160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |