Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq44246 302 6e-77 seq496362 172 8e-38 seq103378 95.1 2e-14 >seq44246 Length=4029 Score = 302 bits (334), Expect = 6e-77 Identities = 990/1528 (65%), Gaps = 14/1528 (1%) Strand=Plus/Minus Query 77106 AGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTA 77165 || ||||| || || || || || || ||||| |||| || | || ||||| || || Sbjct 1774 AGCAGATGGGGGTTGACGATCTGGAACTCTCCTGACAGGACCCGGCGGGTGTAGATGTTG 1715 Query 77166 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGC 77225 ||||| || | || | || || ||||| |||| || || || || || || || ||| Sbjct 1714 CTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGC 1655 Query 77226 ATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATAT 77285 || || |||| || | || || || | || || | ||| || || || || Sbjct 1654 ATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGC 1595 Query 77286 TTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTA 77345 ||||| ||||| || || | || ||||| | ||||| || || || || || Sbjct 1594 TTCCAGTCCCACAGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTG 1535 Query 77346 CTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTT--CAGCTAGTTCACAAC 77403 || | || || | || || || || || || | | | | || ||||| || | Sbjct 1534 CTGACGGGGGAGCC-TCGTACGTGTCGTAGGGGCC--CAGCTCGGCGGCCAGTTCGCAGC 1478 Query 77404 TCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTT 77463 | || |||| || |||| || || || || || |||| | || || || || | Sbjct 1477 TGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCCT 1418 Query 77464 CAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAA 77523 | || ||||| || ||| | | || || ||||| || || | ||||| || || | Sbjct 1417 CGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCAGGCCCTGGACGCCGA 1358 Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583 |||| || || || || | ||| ||||| | || || || | || || | |||| Sbjct 1357 TACCGATCGGCCTGTGGCGCTTGTTGGACTGATCGGCCTCGGGCACCGGGTAGAAGTTAA 1298 Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643 | ||||| || || || || || | || | ||||| ||| || ||||| | Sbjct 1297 TCTCTATGATCTTGTTCAGGTTCTTCACGATCACTTTGGTCACAGACTCCAGTTTCTTGA 1238 Query 77644 AATCAAATCTTCCATCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAA 77700 | ||||| | | || | || ||||||| | ||| || || || |||||||| | Sbjct 1237 AGTCAAAAGTCCGCTCGGGGGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACACA 1178 Query 77701 CTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGA 77760 | || ||||||| | ||| |||| | || || || || || || || || |||| Sbjct 1177 CAGCGACCTCATCGCCACTGGAGTATTCAACGATTTCCGTGCAGAGGTTGCTGCACTTGA 1118 Query 77761 TAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACG 77820 | || ||||| || || ||||||||||| | ||||| | ||| || || || || ||| Sbjct 1117 TGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACG 1058 Query 77821 GAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACT-CT-AGCTTTTAT 77878 | || || | || |||| || ||||| || | | ||| || || || ||| || | Sbjct 1057 GCGTGCCCGACTCCGTCTGGGACTCGATGATGGCGTGCCACAC--CTGCTGAGCCTTCAC 1000 Query 77879 CATAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCC 77938 || | ||| || | ||| | |||||||| || || ||| ||||| || || || Sbjct 999 CACACGCTTGACCCGGCCCTCCCGCTCATATTGGGTGTAGAGCTTCTCAAACTCCTCCCC 940 Query 77939 CCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTC 77998 ||| || |||| || |||| || | || ||||||| |||||||| | Sbjct 939 CCAGCACTCGTCCAGCCCGGGGCTCTCGCTGGGACACATCAGAGACCAGTCCTGGTTGCT 880 Query 77999 CTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATA-AATAGATCTCGGGTTC 78057 || || | ||||| || || || || ||||| | ||| || || ||||||| || || Sbjct 879 CTCCACCCTCTTCATGAACAGGTCGGGGATCCACA-AGCCGTAGAAGAGATCTCTGGCTC 821 Query 78058 TATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCC 78117 | || || || || || || ||||| || || || || || || | | ||| | |||| Sbjct 820 TCTGCTCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCAAAGTGCC 761 Query 78118 ATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATC 78177 | || || || || || || | | || ||||| || || || ||||| || | ||| | Sbjct 760 ACGGCTCCAGGTACATGGCGAAGGCGCCGGGTCGCTTGTTGCCGCCCTGGTCGACATAGC 701 Query 78178 TGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTC 78237 || ||||| || || || |||| ||| || | | ||||| || | || || || | Sbjct 700 GTGCTGTGTTGTTGTAGACCCTCAGCATGGGGACCAGCCCGTTGGAGTTGCCGTTGGTGC 641 Query 78238 CAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCA 78297 | | || || || || | | || || || | || | || |||||||||||| Sbjct 640 CGGCGATGTAGCTCCCGGTGGATCGGATGCAGCTGACGGCCACACCGATTCCTCCTGCCG 581 Query 78298 TCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCA 78357 ||| || || || || || | |||| || |||||||| ||||| || ||||| ||| Sbjct 580 ACTTGGAGATGAGTGCACACTGCTTCAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCT 521 Query 78358 TCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATG 78417 ||||| | || || || ||||| || | ||| | | |||||||| || || | | Sbjct 520 TCATGGTGAGCAGGAAGCAGCTGGAGAGCTGAGGCCGGTTGGTTCCTGCGTTGAAGAGCG 461 Query 78418 TCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATT 78477 | || || || || || ||||| || || || || || ||||| || || || || | | Sbjct 460 TGGGGGAGGCGTGGGTGAACCACTTCTCCGAGAGCAGGTTGTAGGTCTCGATGGCGGCGT 401 Query 78478 CTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAA 78537 | || ||| | || ||||| |||| || | ||| | ||| ||||| || | || Sbjct 400 CGATATCCGTCTTGTGGATTCCGACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCCG 341 Query 78538 CCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGT 78597 || || || || |||| || ||| ||| |||| || || || || || ||| Sbjct 340 CCACTTTGCCGTTGATCTTCAGCAGGTAGGATCGCTCCAGCGTCTTGAAGCCGAAGAAGT 281 Query 78598 TGTATGAAAAGTCTCTCTCGTAAATAAT 78625 |||| || || ||||| ||| | || || Sbjct 280 TGTAGGAGAAATCTCTGTCGAAGATGAT 253 >seq496362 Length=882 Score = 172 bits (190), Expect = 8e-38 Identities = 403/597 (68%), Gaps = 22/597 (4%) Strand=Plus/Minus Query 48143 TGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACC 48202 ||| |||||||| |||| |||||| || | | ||| |||||||| || ||||| | || Sbjct 631 TGCGAAATCACAGTGAACACCTTCGTCACGAGAAATCAATTCGTTTGAGAATGTCAATCC 572 Query 48203 GGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATAT 48262 ||||| | || |||||||| | ||| || || | |||| || || ||||| || Sbjct 571 TGGCATCAAACCTCGTTTTTTCAACCAGAAAATGGAACAAAAAGCACCTGAGAAGAAAAT 512 Query 48263 GCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATCCA 48322 ||||| || || ||||| || | | || |||| || || | || || ||| | Sbjct 511 TCCTTCCACTGCTGCAAAAGCAATCAATCGCTCTGCGAAA---GAATC----TGAATCAA 459 Query 48323 -CCGTTG---TGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 48378 || ||| |||||| || || ||||| || | | ||| | ||||| || || | Sbjct 458 TCCATTGAATTGCCCAGTCCGCTTTCTTTTTGATAGCAGGAAAAACTTCTAATGCGTTGA 399 Query 48379 AGAGAAAGtttttttCATTGCTA--TCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 | | | | ||| || |||| ||||| || ||||| || ||||| | |||| | Sbjct 398 ATAAATCGGCTTTCTC--TGCTTCGTCTTTTACATAAGTGTCGATTAACAAGGAATACGT 341 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACA-TCTCGCTTCTGTGA 48495 |||| |||||||||||| || || || || || || ||| | | ||||||| | Sbjct 340 TTCGCTGTGAATATTTTCCATCATGATTTGGAAACCATAGAAAGAATTTCGCTTCAGCAT 281 Query 48496 TCTGTACCTCCGT-ACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCA 48554 || || || | ||||| | |||||| | ||| |||||||| ||||| || ||| Sbjct 280 ATTGCACTTCATTTACAAAGTT-TTCAGCAAGATTTTCATTTACAATTCCGTCTGAAGCG 222 Query 48555 GCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA---GTTTATTC 48611 || ||||||||||| | ||||| ||||| |||| ||||| | ||| |||||| Sbjct 221 GCGAAAAATGCTAAAATGTGTTTGATAAAGTATTGTTCGTCTTTATTCAACTTGTTATTC 162 Query 48612 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCT 48671 ||||| || | ||||| ||| | ||| | |||||| || ||||| || | ||| Sbjct 161 CAGTCGTTTAAATCTTGTGACAAATCAATTTCTTCGGCAGTCCAGAA-ACTCGCTCCATG 103 Query 48672 TTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTT 48728 |||||| | | ||| ||||| || | ||| || ||||| ||||| | |||| Sbjct 102 GATTTATAAAATTCCCAAATATCTTGGTGCTTGATCGGAAAAATGACAAAACGATTT 46 >seq103378 Length=1867 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 77732 TATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTT 77791 |||||| || || ||||| || ||||||| || |||||||| || ||||||||||| Sbjct 1774 TATCTCTGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGTTGCTCTTCCC 1715 Query 77792 ATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851 ||||| | |||||| || || || |||| || || |||||| ||||||| ||||| || Sbjct 1714 GTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTTTCAGTCTGTGACTCGATGAT 1655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690105676953280