Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_031042.1 Length=111325 Score E Sequences producing significant alignments: (Bits) Value seq426744 205 7e-48 seq507483 185 6e-42 seq466100 131 1e-25 seq506238 129 4e-25 seq435060 116 3e-21 seq511551 105 5e-18 seq450559 96.9 2e-15 seq351952 96.9 2e-15 >seq426744 Length=341 Score = 205 bits (226), Expect = 7e-48 Identities = 238/314 (76%), Gaps = 8/314 (3%) Strand=Plus/Plus Query 71550 ATTAAGATGCAGCGTAAGCACCGGATACAACGCCATT---TGCAAAGTAACGTTGCAGGT 71606 |||| | ||| ||||| | ||| | || | || || ||||| |||||| |||| Sbjct 29 ATTACGCTGCTGCGTATGTACCAGTAACGATACCTTTACCTGCAATCATACGTTGTAGGT 88 Query 71607 TAACACGCTGAGTAACGTAGTACGCATCACGCTGTTTACCAGCTTGGCGCTCACGTTCAA 71666 ||| ||| ||||| |||||||| |||||||| || ||||||||||| ||||||||||| | Sbjct 89 TAAGACGTTGAGTTACGTAGTATGCATCACGTTGCTTACCAGCTTGACGCTCACGTTCTA 148 Query 71667 CAGTAACAGCACGCTGACGCGGCATTACGAAGTTATCTTTATAAACAATAACTGCGAACT 71726 | |||| || ||| ||||| || | |||||||| || ||||| ||| ||| | Sbjct 149 CTGTAATAGTACGTTGACGAGGAACAACGAAGTTCTCACGGTAAACGATAGTACAGAATT 208 Query 71727 CTTTATCTG-CTGCTTTAGCTGGGAAGTACTCAGAAACTACAACCGGCAGACCATAAATA 71785 | | | ||| | ||||||||||||||||| | |||||||| ||| | ||||| || ||| Sbjct 209 C-TGAACTGACAGCTTTAGCTGGGAAGTAGTTAGAAACTAGAACTGCTAGACCGTAGATA 267 Query 71786 CGACCAACCTGACCCTGCAG-TTTAAC-AG-CATCGTTACCAACCTGTGCAACATCCTGC 71842 |||||||| || || || || |||||| || ||| |||||| || |||||||||| Sbjct 268 CGACCAACTTGTCCTTGAAGTTTTAACGAGTTATCCGCACCAACTTGGTTAACATCCTGC 327 Query 71843 CATTCTTCATCTTC 71856 |||||||||||||| Sbjct 328 CATTCTTCATCTTC 341 >seq507483 Length=1083 Score = 185 bits (204), Expect = 6e-42 Identities = 476/711 (67%), Gaps = 27/711 (4%) Strand=Plus/Plus Query 40904 ATTGATGCAGATGGTTGCATT--CGTACTGGCTTCCACGAACACATGACTACTTCTGGTC 40961 ||||| ||||||| |||| ||||| || || | |||||| ||| ||||| |||| Sbjct 372 ATTGACCGAGATGGT--CATTTACGTACAGGGTTTAGCCAACACACGACCACTTCGGGTC 429 Query 40962 GTCTGAGTTCTTCTGGTAAGCTGAACCTGCAACAGTTACCTCGTGATGAATCTATTATCA 41021 |||| ||||| || || || || ||| | || || | ||||||||||| |||| | | Sbjct 430 GTCTAAGTTCATCAGGCAAACTTAACTTACAGCAACTTCCTCGTGATGATGCTATGGTTA 489 Query 41022 AGGGTTGTGTAGTAGCTCCTCCCGGGTATCGTGTAATCGCATGGGACTTAACAACTGCGG 41081 |||| ||| | ||||||||| | || ||| | ||| | || ||| | |||||||| Sbjct 490 AGGGATGTATTGTAGCTCCTGCGGGCTATAGAGTAGTAGCCGTGGATATGGAAACTGCGG 549 Query 41082 AAGTTTATTATGCTGCTGTTCTATCTGGTGATAGAA-ATATGCAACAAGTATTT-ATCAA 41139 || | | || || | || ||| |||| || | | || |||| ||| | | | Sbjct 550 AAATGTGGGTAGCAGCAGCACTTAGTGGGGATAAAAGACCTACAGAAAGTGTTTTAACGA 609 Query 41140 TATGAGAAATGAACCTGATAAATACCCTGACTTCCAC---TCTAACATCGCACACATGGT 41196 |||| | | || | || | ||||||||| |||| | ||||||||||| Sbjct 610 TATGGCTGACAAGTCTATTGTATCTGCCGACTTCCACAGCTCTA---TTGCACACATGGT 666 Query 41197 ATTTAAGCTCCAATGCGAACCTCGTGATGTTAAAAAGT-TATTCCCAGCTCTGCGTCAGG 41255 || |||| | || | | | ||| |||||| | | ||||| || | ||||||| Sbjct 667 GTTCAAGCCAAACTGTCTAGCGCATGAA-TTAAAAGCTATGTTCCCTGCATTACGTCAGG 725 Query 41256 CAGCTAAAGCAATCACCTTTGGTATTCTGTATGGTTCTGGCCCAGCTAAAGTAGCTCATT 41315 | ||||||| || | || |||||||| | ||| ||| |||||||| ||||| | | Sbjct 726 CTTCTAAAGCTATTTCATTCGGTATTCTATTCGGTAGTGGACCAGCTAAGGTAGCAGAAT 785 Query 41316 CTGTTAACGAAGCTCTTTTGGAACAGGCTGCTAAGACAGGCGAACCGTTTGTAGAATGTA 41375 || |||| || | || || || || || ||||| || || | | || || Sbjct 786 CTATTAATGAGTCGCTATTTGAGCAACATGTAAAGACGGGTTGCCCTTACG---AACCTA 842 Query 41376 TGGTTGCAGAT---GCTAAAGAGTACATTGAAACGTACTTCGGTCAGTTCCCGCAGCTTA 41432 | | | ||| |||||||| |||||||| ||||| ||| ||||| | || | Sbjct 843 TTGATAAAGAAACAGCTAAAGATTACATTGATGTTTACTTTAGTCGTTTCCCTGACCTGA 902 Query 41433 AGCGTTGGATTGATAAGTGTCACGACCAGATCAAGAATCATGGGTTTATCTATAGTCACT 41492 | ||||||||||| || || || ||||| | ||||||||||| ||||| |||| Sbjct 903 AACGTTGGATTGACGCGTCCCATGAGCAGATTCTACAGCATGGGTTTATTTATAGCCACT 962 Query 41493 TCGGTCGTAAACGTCGTCTGCATAATATCCACTC--CGAAGACCGTG-GTGTTCAGGGCG 41549 |||| ||||||||| | || | |||||||| ||| || | | | |||| || | Sbjct 963 TCGGACGTAAACGTAGACTACGTAATATCCGCTCAGCGTCTAGAGAGACTGTT---GGTG 1019 Query 41550 AAGAAATT-CGTTCTGGATTTAACGCAATCATTCAGTCTGCTTCTTCTGAT 41599 |||| || ||||| || || ||||| |||||||| || || |||||| Sbjct 1020 AAGAGCTTACGTTCAGGCTTCAACGCTATCATTCAAGGGGCATCATCTGAT 1070 >seq466100 Length=556 Score = 131 bits (144), Expect = 1e-25 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 72290 TCTGGTTCAACTAGCATAGTAAGAATCTTACTAGACATCGGCAATTCTTCGAACAGTGCA 72349 ||||| |||| | |||||||||||||||||||| ||| || | |||||||| | | Sbjct 6 TCTGGCTCAATCATCATAGTAAGAATCTTACTAGTCATTGGAAGCTCTTCGAATAAGTTA 65 Query 72350 CCAACTACCAGCTCTTTCTGCAGATCACGAATGATACGCTGGGAGAAAATAGTTTCATAG 72409 || || |||| ||||||| |||||| | |||||| || ||||||||||| || ||| Sbjct 66 CCTACAACCATTAACTTCTGCATATCACGTAGGATACGTTGAGAGAAAATAGTCTCGTAG 125 Query 72410 TTTTCACTGGAAACCT-GA-ACTGAAGAAGAGGTGTTTACAGCTTTAAGGTGATTCTGAC 72467 || ||||| ||||| | || ||| ||| | ||| ||||||||||||||| | || Sbjct 126 TTCTCACTAGAAACTTCGATACT--TGAACTTGCGTTCACAGCTTTAAGGTGAGCTTCAC 183 Query 72468 CATGTTCAGTTTCGAATACGCCTTTTTC 72495 ||| || ||||| || | |||||||| Sbjct 184 CATATTTGGTTTCAAACATTCCTTTTTC 211 >seq506238 Length=275 Score = 129 bits (142), Expect = 4e-25 Identities = 133/172 (77%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 110503 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCGTTAAATCGAACA 110562 ||||||||||| | | ||||| | ||||||||| | || | || |||||| || || Sbjct 52 GTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATGAGTTAAAACGCACT 111 Query 110563 GCGTAGCCAGAGACACGGATAGTTAATTGAGGGTATTTTTCAGGGTGTTTCTGTGCATC- 110621 ||||| || || ||||| ||||||||||| || ||||||||||||||||| ||||| Sbjct 112 GCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGTGTTTAACAGCATCT 171 Query 110622 -CAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGCTGACCACCTTC 110672 | || | | ||||||| ||||||||| || |||| || ||||||||||| Sbjct 172 TCCAATGTT--TCACGACGTAACACATTCACGTTTAAATGTTGACCACCTTC 221 >seq435060 Length=507 Score = 116 bits (128), Expect = 3e-21 Identities = 322/489 (66%), Gaps = 21/489 (4%) Strand=Plus/Plus Query 41138 AATATGAGAAATGAACCTGATAAATACCCTGACTTCCACTCTAACATCGCACACATGGTA 41197 || |||| | | || ||| || || || ||||||||| |||||| || |||||||| Sbjct 23 AAGATGAAAGAAGATCCTACCAAGTATCCCGACTTCCACAGTAACATAGCTCACATGGTG 82 Query 41198 TTTAAGCTCCAATGCGAACCTCGTGATGTTAAAAAGTTATTCCCAGCTCTGCGTCAGGCA 41257 ||||| || | || | ||| || ||||| || |||||||||| || | ||||| Sbjct 83 TTTAACCTACCTTGTAAGCCTGAGGAAGTTAAGAAACTATTCCCAGCCCTAAGGCAGGCT 142 Query 41258 GCTAAAGCAATCACCTTTGGTATTCTGTATGGTTCTGGCCCAGCTAAAGTAGCTCATTCT 41317 || || || || || ||||||||||| | ||||| || |||| ||||| | Sbjct 143 GCGAAGGCGATAACATTTGGTATTCTATTCGGTTCAGGAGCAGCATCTGTAGCAGAGCAA 202 Query 41318 GTTAACGAAGCTCTTTTGGAACAGGCTGCTAAGACAGGCGAACCGTTTGTA--GAATGTA 41375 |||||| |||| | ||| | || ||| ||| | | ||||| || | Sbjct 203 GTTAACTTAGCTAAGCTAGAATTAGGTG--AAG-CAG-----CTGATTGTACTAAAGAAA 254 Query 41376 TGGTTGCAGATGCTAAAGAGTACATTGAAACGTACTTCGGTCAGTTCCCGCAGCTT-AAG 41434 | | |||| | ||||| ||| ||||||| | |||||| ||| ||| Sbjct 255 TCGCCGCAGGT---------TACATCGAAGTGTACTTCAAGCGGTTCCCTAGACTTAAAG 305 Query 41435 CGTTGGATTGATAAGTGTCACGACCAGATCAAGAATCATGGGTTTATCTATAGTCACTTC 41494 || ||||||||| ||||| || | ||| | | || ||||| || | |||||| Sbjct 306 CG-TGGATTGATTCTTGTCATGATGAAATCCGTCAGAAAGGATTTATATACAACCACTTC 364 Query 41495 GGTCGTAAACGTCGTCTGCATAATATCCACTCCGAAGACCGTGGTGTTCAGGGCGAAGAA 41554 || ||||| ||| | | || || ||| || || | || ||| || | |||| Sbjct 365 GGCCGTAAGCGTAGATTACACAACATCTCTTCTAGCGATAGAGGCGTTGTAGGTGGAGAA 424 Query 41555 ATTCGTTCTGGATTTAACGCAATCATTCAGTCTGCTTCTTCTGATAGTCTCCTTTTAGGT 41614 || ||||| |||||||| || ||||| |||||||| || |||||| | || |||| Sbjct 425 ATCCGTTCAGGATTTAATGCTATCATACAGTCTGCGTCATCTGATCACTTACTGCTAGGA 484 Query 41615 GCTGTAGAT 41623 ||||||||| Sbjct 485 GCTGTAGAT 493 >seq511551 Length=634 Score = 105 bits (116), Expect = 5e-18 Identities = 255/378 (67%), Gaps = 6/378 (2%) Strand=Plus/Plus Query 22618 TGCTGTATATGCTACTGAACTTACTGAAAAAGAATGTTATGATGCATTCCAGGCCCTAGA 22677 |||||| ||||| || | | || || ||||| ||||||||| ||||| || || Sbjct 13 TGCTGTTTATGCAACGAAGATGACAGAGAAAGAGACTTATGATGCTTTCCAAAGTCTTGA 72 Query 22678 GTATGAGACTAATTCGTTATTTAACTCTAATGGGCAGA-CTCCTTTTGTTACTCTGGGCT 22736 ||| || | ||| | ||| | | ||||| || | | |||||||| || | || | Sbjct 73 GTACGAAATTAACACCTTACACACAGCAAATGGACAAAGCCCCTTTTGT-ACGGTAGGTT 131 Query 22737 TTGGTTTAGG-ACAAGAATGGGAAGAAAGGATGATTCAGAAAGCTATTCTTCAAAATCGT 22795 |||||||||| || | ||||| | | | ||||||||| | || ||| | ||| Sbjct 132 TTGGTTTAGGTACTTGT-TGGGAGTCTAAGCTAATTCAGAAATCCATCCTTGAGGTGCGT 190 Query 22796 CTTAAAGGACTAGGGGCAGCAGGGTCGACACCTATCTTTCCTAAATTGATATTTTCAGTT 22855 ||||||| |||| ||| || | |||| | | || ||||| | || | | || Sbjct 191 ATTAAAGGCTTAGGTGCATCAAAGAGGACAGCGGTATTCCCTAAGCTTATCCTAACTATT 250 Query 22856 AAGGAGGGGTTAAACAAAAATCCTGGTGATCCTAATTATGATATAAAACAGCTAGCACTA 22915 || || || | ||| || | | || || || ||| |||| |||||| |||| ||| Sbjct 251 AAAGACGGTGTCAACTTTAAACAGGAAGACCCAAACTATAATATTAAACAGTTAGCTCTA 310 Query 22916 GAATGTTCTGCTACACGTATGTACCCAGACTATT-TAAGCTATGAGAAGGTTGTAGCTGT 22974 || ||| | || ||||||||||| || |||| | | ||| || ||| |||||| || Sbjct 311 GAGTGTGCCAGTAAGCGTATGTACCCTGA-TATTATCAACTACGATAAGATTGTAGAGGT 369 Query 22975 TACTGGCGATTTTAAAGC 22992 |||||| | |||||| || Sbjct 370 TACTGGTGGTTTTAAGGC 387 >seq450559 Length=633 Score = 96.9 bits (106), Expect = 2e-15 Identities = 244/361 (68%), Gaps = 14/361 (4%) Strand=Plus/Plus Query 22390 CGGTATGTTGAAAAATGGCACTAAAATTGGTAATGCGAATATTGAAACTCCTAAATCCAT 22449 ||| ||||| | |||| |||||| |||||||| | || ||| | ||||| || || Sbjct 52 CGGCATGTTAACTCATGGTTTTAAAATGGGTAATGCTGAAATAGAACCGCCTAAGTCTAT 111 Query 22450 AACTACTGCGTGTGCGATTACTGCTCAGATTATTGCTCAAGTATCAGGCGCTCAGTATGG 22509 | | ||||| ||| |||| || || ||||||||||| ||| | || | ||||| Sbjct 112 ATCAACTGCCACTGCTGTTACGGCGCAAATTATTGCTCAGGTAGCGAGCCATATTTATGG 171 Query 22510 TGGTACTTCCATTGATCGTATTGATGAAGTTCTAGCTCCGTATGTTAGGAAGTC--CTAC 22567 |||||| | ||| | ||||| || ||||| ||||| || ||| | || || ||| Sbjct 172 TGGTACCACGATTAACCGTATCGACGAAGTGTTAGCTGAGTTTGT--GCAAATCAGTTAC 229 Query 22568 AATAAACATCTGGGGCGTGGC-CTACGTTGGCTTAAGGATGAGAGAAAAGCTGCTGTATA 22626 | || || || |||| || | |||| ||| || || | | | | || Sbjct 230 CAAAAGCACCT-TAGCGTCGCTAAAAAATGGC--AAG--TGGCAG--ACGTAGAAGGTTA 282 Query 22627 TGCTACTGA-ACTTACTGAAAAAGAATGTTATGATGCATTCCAGGCCCTAGAGTATGAGA 22685 ||| | ||| | || |||||||| ||| |||| ||||||||| | || || ||||| Sbjct 283 TGCCA-TGACGCAAACCGAAAAAGAGTGTCATGACGCATTCCAGTCACTTGAATATGAAG 341 Query 22686 CTAATTCGTTATTTAACTCTAATGGGCAGACTCCTTTTGTTACTCTGGGCTTTGGTTTAG 22745 ||| | || || | ||||||| || || || |||||||| | || |||||||||| Sbjct 342 TGAATACCTTGCATACCGCTAATGGCCAAACACCGTTTGTTACCTTTGGTTTTGGTTTAG 401 Query 22746 G 22746 | Sbjct 402 G 402 >seq351952 Length=416 Score = 96.9 bits (106), Expect = 2e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 110503 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCGTTAAATCGAACA 110562 ||||| ||||| | || || || | || |||||| ||| | | ||||||||| || Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTACT 93 Query 110563 GCGTAGCCAGAGACACGGATAGTTAATTGAGGGTATTTTTCAGGGTGTTTCTGTGCATCC 110622 ||||| || || ||||| || |||||||| || || || || || | || | ||||||| Sbjct 94 GCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATCC 153 Query 110623 AAAAGCTGATCACGACTTAACACATTGACATTTAGGTGCTGACCACCTTCGAT 110675 || | | ||||| | | ||||| || |||| ||| ||||||||||| || Sbjct 154 AATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCAAT 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353834440392692