Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_031047.1
Length=170770
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 167 3e-36
seq506238 114 1e-20
seq509673 109 6e-19
seq511551 96.9 4e-15
seq326422 84.2 2e-11
>seq449735
Length=3187
Score = 167 bits (184), Expect = 3e-36
Identities = 488/741 (66%), Gaps = 23/741 (3%)
Strand=Plus/Plus
Query 151994 ATTTCATTGCCAACTCCTATTATGGCTGGTTGTCGTACTCCTACTCGACAGTTCAGTTCA 152053
|||||| | || || || |||||||| ||| |||||| || || || ||||| || ||
Sbjct 28 ATTTCACTACCTACGCCAATTATGGCAGGTGTTCGTACGCCAACACGCCAGTTTAGCTCG 87
Query 152054 TGCGTTGTTATTGAGGCAGGAGATTCGCTGAAGTCTATCAATAAGGCTTCTGCTTCAATT 152113
|| || | || ||| || || || | || || || | || || |||||
Sbjct 88 TGTGTATTAATAGAGTGTGGCGACAGCCTTGATTCAATTAACGCCACCTCGTCTGCAATT 147
Query 152114 GTTGAATATATCTCCAAACGAGCTGGAATCGGCATTAACGTTGGTATGATTCGTGCCGAA 152173
||| |||| | || |||| || || || |||||||||| ||| ||||||||
Sbjct 148 GTTAAATACGTATCGCAACGTGCCGGCATTGGCATTAACGCAGGTCGCATTCGTGCACTG 207
Query 152174 GGTTCTAAGATTGGCATGGGTGAAGTACGCCATACTGGTGTTATTCCTTTTTGGAAACAT 152233
||| | ||| ||| || |||| |||||| ||| ||||||||||| || ||
Sbjct 208 GGTAGCCACATTCGCAATGGCGAAGCGTACCATACGGGTTGTATTCCTTTTTATAAGCAC 267
Query 152234 TTTCAGACTGCTGTTAAATCATGCTCACAGGGTGGAATTCGTGGCGGCGCTGCTACTGCT 152293
||||| || || |||||| || || || || || | ||||||||||| || || ||
Sbjct 268 TTTCAAACAGCGGTTAAAAGCTGTTCGCAAGGCGGTGTACGTGGCGGCGCAGCAAC--CT 325
Query 152294 TAT--TATCCTATTTGGCATTTGGAAGTTGAAAATCTTCTCGTTTTGAAAAATAACAAAG 152351
| | || || |||||||||| ||||| ||||| || | || | ||||||||| |
Sbjct 326 TGTTCTACCCGCTTTGGCATTTAGAAGTAGAAAACCTGTTAGTACTTAAAAATAACCGCG 385
Query 152352 GCGTAGAAGAAAACCGCATCCGTCATATGGATTATAGTGTTCAGCTGAATGATTTGATGA 152411
| || || || |||||| | |||||| | ||||| | || ||| | ||| | | |||
Sbjct 386 GGGTTGATGACAACCGCGTGCGTCATTTAGATTACGGCGTACAGTTTAATAAACTAATGT 445
Query 152412 TGGAACGATTCGGAAAGAATGATTATATTACTTTGTTCAGTCCGCATGAAATGGGTGGCG 152471
|| || || | || || ||||| ||||| || || ||| || |||
Sbjct 446 ACTCGCGTTTAATTAAAGACGACTACATTACCTTGTTTAGCCCCTCTGATGTGCCAGGC- 504
Query 152472 AGCTTTATTATTCTTATTTTAAAGACCAAGAC-CGTTT-CCGTGAATTATACGAAGCAGC 152529
||||| || | | |||| ||||||||||| |||| || | |||| | | |
Sbjct 505 --CTTTACGATGCATTTTTTGAAGACCAAGACGAGTTTGACGCGCTTTAT--GTAAAATA 560
Query 152530 AGAAAAAGACCCTAAT--ATTCGTAAAAAGCGTATTAAAGCCCGTGAACTATT-TGAA-- 152584
||| |||| | ||| ||||||||||| || |||||||| |||||| || | ||
Sbjct 561 CGAACAAGA--CGAATCAATTCGTAAAAAACGCATTAAAGCTATTGAACTGTTCTCAATG 618
Query 152585 -TTGCTCATGACTGAACGTTCAGGGACAGCAAGGATTTATGTACAGTTCATTGATAATAC 152643
|||| || |||||| || | || | | ||||| |||| | |||| |
Sbjct 619 TTTGCGCA----AGAACGTGCAAGTACCGGTCGTATTTACTTACAAAACGTTGACCACTG 674
Query 152644 GAATAACTATACTCCGTTTATTCGTGAAAAGGCACCTATTCGTCAGAGTAACTTGTGCTG 152703
|||| | | ||||| ||| | || |||||||||||| || ||| || || |
Sbjct 675 TAATACGCACAGCCCGTTCATTGCTAAAGTGGCACCTATTCGCCAATCTAATTTATGTTT 734
Query 152704 TGAAATTGCTATTCCAACAAA 152724
|||||||| | ||||| ||
Sbjct 735 AGAAATTGCATTACCAACTAA 755
>seq506238
Length=275
Score = 114 bits (126), Expect = 1e-20
Identities = 116/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 62572 CGTCGTGAAACTCTGGAAGATGCAGTTAAGCATCCGGAAAAATATCCGCAGCTGACCATC 62631
||||||||||| |||||||||| ||||| || || ||||||||||| || | || ||
Sbjct 188 CGTCGTGAAACATTGGAAGATGCTGTTAAACACCCTGAAAAATATCCACAATTAACTATT 129
Query 62632 CGTGTATCCGGTTATGCAGTTCGCTTTAACTCTCTGACTCCGGAACAGCAGCGCGACGTT 62691
|||||||| ||||| ||||| || |||||||| | || || ||||| |||| |||||
Sbjct 128 CGTGTATCAGGTTACGCAGTGCGTTTTAACTCATTAACACCAGAACAACAGCAAGACGTA 69
Query 62692 ATCGCTCGTACCTTCACCGAGAGTTTGTAAT 62722
| | ||||| || || || | |||||||
Sbjct 68 TTAACACGTACATTTACAGAAACATTGTAAT 38
>seq509673
Length=441
Score = 109 bits (120), Expect = 6e-19
Identities = 143/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 152204 CATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGACTGCTGTTAAATCATGCTCACAG 152263
||||| ||| ||| || || | |||| || || ||||||||||||| ||||||||
Sbjct 418 CATACGGGTTGTATCCCATTCTATAAACTGTTCCAAACTGCTGTTAAATGCTGCTCACAA 359
Query 152264 GGTGGAATTCGTGGCGGCGCTGCTACTGCTTATTATCCTATTTGGCATTTGGAAGTTGAA 152323
|| || | |||||||| || || || | ||| || | |||||||| ||||||||
Sbjct 358 GGCGGCGTCCGTGGCGGTGCAGCGACGTTGTTTTACCCATTATGGCATTTAGAAGTTGAG 299
Query 152324 AATCTTCTCGTTTTGAAAAATAACAAAGGCGTAGAAGAAAACCGCATCCGTCATATGGAT 152383
| | || ||||||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct 298 TCATTATTGGTACTGAAAAATAACCGCGGCGTGGAAGACAACCGTGTCCGTCATATGGAT 239
Query 152384 TATAGTGTTCAGCTGAAT 152401
|| | || ||| | |||
Sbjct 238 TACGGCGTACAGTTAAAT 221
>seq511551
Length=634
Score = 96.9 bits (106), Expect = 4e-15
Identities = 201/293 (69%), Gaps = 16/293 (5%)
Strand=Plus/Plus
Query 78912 TTCCCTAAGCTTGTTATGTTTGTTGAAGAAGGTGTTAATCTTTACA-AAGACGATCCGAA 78970
|||||||||||| | | | || |||| ||||| || ||||| | | || || || ||
Sbjct 227 TTCCCTAAGCTTATCCTAACTATTAAAGACGGTGTCAA-CTTTAAACAGGAAGACCCAAA 285
Query 78971 CTATGATATTAAGCAGCTTGCTCTAGAGTGCGCAAGCAAAAGAATGTATCCTGATATTAT 79030
|||| ||||||| ||| | ||||||||||| || || || | ||||| ||||||||||
Sbjct 286 CTATAATATTAAACAGTTAGCTCTAGAGTGTGCCAGTAAGCGTATGTACCCTGATATTA- 344
Query 79031 TTCAGCTA--AGAACAATAAAGCTATCACTGGTTCATCTATTCCTGTTTCTCCGATGGGA 79088
||| ||| | || | | || | |||||| | || | |||||
Sbjct 345 -TCAACTACGATAAGATTGTAGAGGTTACTGGTGGTTTTA------AGGCAAGCATGGGC 397
Query 79089 TGCCGTAGTTTC--TTGAGTGTATGGAAAGATTCGACTGGTAATGAAATTCTTGATGGAC 79146
||| | || ||| | ||| |||| ||||| || ||||||| ||| | |||||||||
Sbjct 398 TGCAGGAGCTTCCTTGGAGAGTAT--AAAGACTCTTCTGGTAAGGAAGTGTTTGATGGAC 455
Query 79147 GTAATAATCTTGGTGTTGTAACACTGAATCTTCCTCGTATCGCATTAGATTCT 79199
|||| || | ||||| |||| | || || |||||| | ||| || | |||
Sbjct 456 GTAACAACTTAGGTGTGGTAAGCTTAAACCTACCTCGTGTTGCACTACAATCT 508
>seq326422
Length=2068
Score = 84.2 bits (92), Expect = 2e-11
Identities = 89/114 (78%), Gaps = 4/114 (4%)
Strand=Plus/Plus
Query 1088 CGCTCTACCAAACTGAGCTACAC--GGAGTAAATTAAATTTGAGCGGATAATGAGAATCG 1145
||||||||||| |||||||| | | | | |||| | |||||| | | ||||||
Sbjct 292 CGCTCTACCAA-CTGAGCTATATCAGCATCACCATAAACTGGAGCGGGCAGCGGGAATCG 350
Query 1146 AACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGC 1198
||| | ||||||||| ||||||| ||||||||||| |||||||||||| ||||
Sbjct 351 AACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 542747241741600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |