Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_031047.1 Length=170770 Score E Sequences producing significant alignments: (Bits) Value seq449735 167 3e-36 seq506238 114 1e-20 seq509673 109 6e-19 seq511551 96.9 4e-15 seq326422 84.2 2e-11 >seq449735 Length=3187 Score = 167 bits (184), Expect = 3e-36 Identities = 488/741 (66%), Gaps = 23/741 (3%) Strand=Plus/Plus Query 151994 ATTTCATTGCCAACTCCTATTATGGCTGGTTGTCGTACTCCTACTCGACAGTTCAGTTCA 152053 |||||| | || || || |||||||| ||| |||||| || || || ||||| || || Sbjct 28 ATTTCACTACCTACGCCAATTATGGCAGGTGTTCGTACGCCAACACGCCAGTTTAGCTCG 87 Query 152054 TGCGTTGTTATTGAGGCAGGAGATTCGCTGAAGTCTATCAATAAGGCTTCTGCTTCAATT 152113 || || | || ||| || || || | || || || | || || ||||| Sbjct 88 TGTGTATTAATAGAGTGTGGCGACAGCCTTGATTCAATTAACGCCACCTCGTCTGCAATT 147 Query 152114 GTTGAATATATCTCCAAACGAGCTGGAATCGGCATTAACGTTGGTATGATTCGTGCCGAA 152173 ||| |||| | || |||| || || || |||||||||| ||| |||||||| Sbjct 148 GTTAAATACGTATCGCAACGTGCCGGCATTGGCATTAACGCAGGTCGCATTCGTGCACTG 207 Query 152174 GGTTCTAAGATTGGCATGGGTGAAGTACGCCATACTGGTGTTATTCCTTTTTGGAAACAT 152233 ||| | ||| ||| || |||| |||||| ||| ||||||||||| || || Sbjct 208 GGTAGCCACATTCGCAATGGCGAAGCGTACCATACGGGTTGTATTCCTTTTTATAAGCAC 267 Query 152234 TTTCAGACTGCTGTTAAATCATGCTCACAGGGTGGAATTCGTGGCGGCGCTGCTACTGCT 152293 ||||| || || |||||| || || || || || | ||||||||||| || || || Sbjct 268 TTTCAAACAGCGGTTAAAAGCTGTTCGCAAGGCGGTGTACGTGGCGGCGCAGCAAC--CT 325 Query 152294 TAT--TATCCTATTTGGCATTTGGAAGTTGAAAATCTTCTCGTTTTGAAAAATAACAAAG 152351 | | || || |||||||||| ||||| ||||| || | || | ||||||||| | Sbjct 326 TGTTCTACCCGCTTTGGCATTTAGAAGTAGAAAACCTGTTAGTACTTAAAAATAACCGCG 385 Query 152352 GCGTAGAAGAAAACCGCATCCGTCATATGGATTATAGTGTTCAGCTGAATGATTTGATGA 152411 | || || || |||||| | |||||| | ||||| | || ||| | ||| | | ||| Sbjct 386 GGGTTGATGACAACCGCGTGCGTCATTTAGATTACGGCGTACAGTTTAATAAACTAATGT 445 Query 152412 TGGAACGATTCGGAAAGAATGATTATATTACTTTGTTCAGTCCGCATGAAATGGGTGGCG 152471 || || || | || || ||||| ||||| || || ||| || ||| Sbjct 446 ACTCGCGTTTAATTAAAGACGACTACATTACCTTGTTTAGCCCCTCTGATGTGCCAGGC- 504 Query 152472 AGCTTTATTATTCTTATTTTAAAGACCAAGAC-CGTTT-CCGTGAATTATACGAAGCAGC 152529 ||||| || | | |||| ||||||||||| |||| || | |||| | | | Sbjct 505 --CTTTACGATGCATTTTTTGAAGACCAAGACGAGTTTGACGCGCTTTAT--GTAAAATA 560 Query 152530 AGAAAAAGACCCTAAT--ATTCGTAAAAAGCGTATTAAAGCCCGTGAACTATT-TGAA-- 152584 ||| |||| | ||| ||||||||||| || |||||||| |||||| || | || Sbjct 561 CGAACAAGA--CGAATCAATTCGTAAAAAACGCATTAAAGCTATTGAACTGTTCTCAATG 618 Query 152585 -TTGCTCATGACTGAACGTTCAGGGACAGCAAGGATTTATGTACAGTTCATTGATAATAC 152643 |||| || |||||| || | || | | ||||| |||| | |||| | Sbjct 619 TTTGCGCA----AGAACGTGCAAGTACCGGTCGTATTTACTTACAAAACGTTGACCACTG 674 Query 152644 GAATAACTATACTCCGTTTATTCGTGAAAAGGCACCTATTCGTCAGAGTAACTTGTGCTG 152703 |||| | | ||||| ||| | || |||||||||||| || ||| || || | Sbjct 675 TAATACGCACAGCCCGTTCATTGCTAAAGTGGCACCTATTCGCCAATCTAATTTATGTTT 734 Query 152704 TGAAATTGCTATTCCAACAAA 152724 |||||||| | ||||| || Sbjct 735 AGAAATTGCATTACCAACTAA 755 >seq506238 Length=275 Score = 114 bits (126), Expect = 1e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 62572 CGTCGTGAAACTCTGGAAGATGCAGTTAAGCATCCGGAAAAATATCCGCAGCTGACCATC 62631 ||||||||||| |||||||||| ||||| || || ||||||||||| || | || || Sbjct 188 CGTCGTGAAACATTGGAAGATGCTGTTAAACACCCTGAAAAATATCCACAATTAACTATT 129 Query 62632 CGTGTATCCGGTTATGCAGTTCGCTTTAACTCTCTGACTCCGGAACAGCAGCGCGACGTT 62691 |||||||| ||||| ||||| || |||||||| | || || ||||| |||| ||||| Sbjct 128 CGTGTATCAGGTTACGCAGTGCGTTTTAACTCATTAACACCAGAACAACAGCAAGACGTA 69 Query 62692 ATCGCTCGTACCTTCACCGAGAGTTTGTAAT 62722 | | ||||| || || || | ||||||| Sbjct 68 TTAACACGTACATTTACAGAAACATTGTAAT 38 >seq509673 Length=441 Score = 109 bits (120), Expect = 6e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 152204 CATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGACTGCTGTTAAATCATGCTCACAG 152263 ||||| ||| ||| || || | |||| || || ||||||||||||| |||||||| Sbjct 418 CATACGGGTTGTATCCCATTCTATAAACTGTTCCAAACTGCTGTTAAATGCTGCTCACAA 359 Query 152264 GGTGGAATTCGTGGCGGCGCTGCTACTGCTTATTATCCTATTTGGCATTTGGAAGTTGAA 152323 || || | |||||||| || || || | ||| || | |||||||| |||||||| Sbjct 358 GGCGGCGTCCGTGGCGGTGCAGCGACGTTGTTTTACCCATTATGGCATTTAGAAGTTGAG 299 Query 152324 AATCTTCTCGTTTTGAAAAATAACAAAGGCGTAGAAGAAAACCGCATCCGTCATATGGAT 152383 | | || ||||||||||| ||||| ||||| ||||| |||||||||||||| Sbjct 298 TCATTATTGGTACTGAAAAATAACCGCGGCGTGGAAGACAACCGTGTCCGTCATATGGAT 239 Query 152384 TATAGTGTTCAGCTGAAT 152401 || | || ||| | ||| Sbjct 238 TACGGCGTACAGTTAAAT 221 >seq511551 Length=634 Score = 96.9 bits (106), Expect = 4e-15 Identities = 201/293 (69%), Gaps = 16/293 (5%) Strand=Plus/Plus Query 78912 TTCCCTAAGCTTGTTATGTTTGTTGAAGAAGGTGTTAATCTTTACA-AAGACGATCCGAA 78970 |||||||||||| | | | || |||| ||||| || ||||| | | || || || || Sbjct 227 TTCCCTAAGCTTATCCTAACTATTAAAGACGGTGTCAA-CTTTAAACAGGAAGACCCAAA 285 Query 78971 CTATGATATTAAGCAGCTTGCTCTAGAGTGCGCAAGCAAAAGAATGTATCCTGATATTAT 79030 |||| ||||||| ||| | ||||||||||| || || || | ||||| |||||||||| Sbjct 286 CTATAATATTAAACAGTTAGCTCTAGAGTGTGCCAGTAAGCGTATGTACCCTGATATTA- 344 Query 79031 TTCAGCTA--AGAACAATAAAGCTATCACTGGTTCATCTATTCCTGTTTCTCCGATGGGA 79088 ||| ||| | || | | || | |||||| | || | ||||| Sbjct 345 -TCAACTACGATAAGATTGTAGAGGTTACTGGTGGTTTTA------AGGCAAGCATGGGC 397 Query 79089 TGCCGTAGTTTC--TTGAGTGTATGGAAAGATTCGACTGGTAATGAAATTCTTGATGGAC 79146 ||| | || ||| | ||| |||| ||||| || ||||||| ||| | ||||||||| Sbjct 398 TGCAGGAGCTTCCTTGGAGAGTAT--AAAGACTCTTCTGGTAAGGAAGTGTTTGATGGAC 455 Query 79147 GTAATAATCTTGGTGTTGTAACACTGAATCTTCCTCGTATCGCATTAGATTCT 79199 |||| || | ||||| |||| | || || |||||| | ||| || | ||| Sbjct 456 GTAACAACTTAGGTGTGGTAAGCTTAAACCTACCTCGTGTTGCACTACAATCT 508 >seq326422 Length=2068 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/114 (78%), Gaps = 4/114 (4%) Strand=Plus/Plus Query 1088 CGCTCTACCAAACTGAGCTACAC--GGAGTAAATTAAATTTGAGCGGATAATGAGAATCG 1145 ||||||||||| |||||||| | | | | |||| | |||||| | | |||||| Sbjct 292 CGCTCTACCAA-CTGAGCTATATCAGCATCACCATAAACTGGAGCGGGCAGCGGGAATCG 350 Query 1146 AACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGC 1198 ||| | ||||||||| ||||||| ||||||||||| |||||||||||| |||| Sbjct 351 AACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542747241741600