Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_031057.1
Length=180219
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 201 1e-46
seq506238 152 6e-32
seq508109 118 1e-21
seq128994 111 2e-19
seq522862 93.3 5e-14
>seq449735
Length=3187
Score = 201 bits (222), Expect = 1e-46
Identities = 319/455 (70%), Gaps = 2/455 (0%)
Strand=Plus/Plus
Query 43397 TACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGCGTAG 43456
|||||||||| |||||||| ||||| ||||| || || || |||||| | || |||
Sbjct 35 TACCTACGCCAATTATGGCAGGTGTTCGTACGCCAACACGCCAGTTTAGCTCGTGTGTAT 94
Query 43457 TGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCTGCGATCGTGAAGT 43516
| || || | || || || | ||| | || || | ||||| || || || |
Sbjct 95 TAATAGAGTGTGGCGACAGCCTTGATTCAATTAACGCCACCTCGTCTGCAATTGTTAAAT 154
Query 43517 ATATTTCACAACGCGCGGGTATCGGTGTTAATGCTGGACACATTCGCGCAATGGGTTCTA 43576
| | || ||||| || || || || |||| || || | |||||| ||| |||||
Sbjct 155 ACGTATCGCAACGTGCCGGCATTGGCATTAACGCAGGTCGCATTCGTGCACTGGGTAGCC 214
Query 43577 AAATCCGTGGTGGTGAAGCAGTAC-ATACAGGCGTGATCCCGTTCTGGAAACATATTCAG 43635
| || || ||| ||||| |||| |||| || || || || | || || ||||
Sbjct 215 ACATTCGCAATGGCGAAGC-GTACCATACGGGTTGTATTCCTTTTTATAAGCACTTTCAA 273
Query 43636 ACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTGTATTAT 43695
|||||||||||| |||||| ||||| || || ||||| || || ||||| |||| ||
Sbjct 274 ACAGCGGTTAAAAGCTGTTCGCAAGGCGGTGTACGTGGCGGCGCAGCAACCTTGTTCTAC 333
Query 43696 CCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTGAG 43755
||| | |||||||| ||||| ||||||||| | || || ||||| ||| || |||||
Sbjct 334 CCGCTTTGGCATTTAGAAGTAGAAAACCTGTTAGTACTTAAAAATAACCGCGGGGTTGAT 393
Query 43756 AATAACCGTATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATGTATAAGCGT 43815
| ||||| | ||||| | ||||| ||||| ||| |||| | | ||||| ||||
Sbjct 394 GACAACCGCGTGCGTCATTTAGATTACGGCGTACAGTTTAATAAACTAATGTACTCGCGT 453
Query 43816 TTAATCAATAACGATTACATCACACTGTTCAGCCC 43850
||||| || |||| ||||| || |||| |||||
Sbjct 454 TTAATTAAAGACGACTACATTACCTTGTTTAGCCC 488
>seq506238
Length=275
Score = 152 bits (168), Expect = 6e-32
Identities = 144/184 (78%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 53419 GAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGGAAGATGCTGTG 53478
|||||||| || || |||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 221 GAAGGTGGTCAACATTTAAACGTGAATGTGTTACGTCGTGAAACATTGGAAGATGCTGTT 162
Query 53479 AAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGCTTT 53538
||||| ||||| || || ||||| ||||| || || || |||||||| ||||| || |||
Sbjct 161 AAACACCCTGAAAAATATCCACAATTAACTATTCGTGTATCAGGTTACGCAGTGCGTTTT 102
Query 53539 AATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAGCATG 53598
|| || | || ||||||||||||| ||||| | | | || ||||| |||| ||
Sbjct 101 AACTCATTAACACCAGAACAACAGCAAGACGTATTAACACGTACATTTACAGAAACATTG 42
Query 53599 TAAT 53602
||||
Sbjct 41 TAAT 38
>seq508109
Length=334
Score = 118 bits (130), Expect = 1e-21
Identities = 209/305 (69%), Gaps = 0/305 (0%)
Strand=Plus/Minus
Query 94049 CCGCGTCCCTTTTGTTTCAGCCCCAGGAACACAATCGCATTGACTTGTTTCAGGCGCGGA 94108
||||| |||||||| |||| | ||||||||| ||||| || | | || ||
Sbjct 305 CCGCGACCCTTTTGCTTCAATGATAAGAACACAATAGCATTTACATTAGCTAATCGTGGG 246
Query 94109 TCATTCTTCACAGCGTCAACCACGTTAAACGCGTCATCATAGGTTTTAGAGCTAACCATG 94168
||| | |||| ||| ||| || || |||| || ||| || | || | |||
Sbjct 245 TCAGTTTTCATAGCTTCAGTTACAGTATACGCATCTTCAATAGTACGACCACTGATCATA 186
Query 94169 AAATGAAGGTTGATCTGCTGTTGTCCTGCTTCTGACAGGTTCGCTACCGAGTCGAAAGCG 94228
|| || |||||||| |||| ||| || || | | | ||| || ||| || ||
Sbjct 185 AAGTGTAGGTTGATTTGCTTTTGACCAGCAGCGGTTAAACGCGCAACACTGTCAAACGCT 126
Query 94229 ACATCGAAGCCAGCATGTTTATAAACCGATACCGCAACAGCCCCAGCAACCGCAGCCAAA 94288
||||| || ||||| ||||||||||| ||||| |||| ||| |||||||| | || ||
Sbjct 125 ACATCAAAACCAGCGTGTTTATAAACTGATACAGCAATAGCACCAGCAACTGATGCTAAT 66
Query 94289 CGCGCTGCAACGTCTTTTGATACATCGGCAATGGTAAGGTTCGGCACAATGCCTTTAGAA 94348
|| ||||| |||| ||| ||||| ||||| || || || || | ||| |||| |||
Sbjct 65 TTAGCAGCAACTTCTTCTGACACATCAGCAATTGTTAGATTTGGGATAATACCTTGTGAA 6
Query 94349 CGCGC 94353
|| ||
Sbjct 5 CGAGC 1
>seq128994
Length=861
Score = 111 bits (122), Expect = 2e-19
Identities = 204/297 (69%), Gaps = 4/297 (1%)
Strand=Plus/Minus
Query 45688 TATCTGTGTATGCACGCTGTCAACGCTCTGGAAGCGATTCGTTTCTATGTCTCGTTTACC 45747
||| |||| ||| | ||||| || | ||||||||||| ||||||||| ||| ||
Sbjct 472 TATTTGTGCATGATGTCAGTCAATGCCTTAGAAGCGATTCGCTTCTATGTCAGTTTTGCC 413
Query 45748 TTTACGTTCAACTTTGCCGAACAGGGCAAGATGGAAGGTAACGCAAAGATCATGCGTCTG 45807
| | |||| |||||| |||| | ||||||||||| || || || || || |
Sbjct 412 TGTTCGTTTGCCTTTGCTGAACGTCGTGTTATGGAAGGTAATGCTAAAATTATTCGCTTA 353
Query 45808 ATTGCCCGTGATGAAGCACTTCATCAGAAAGGTACTCAAAGCAAGATCCGACTCTG--GC 45865
||||||||||||||||| | || | || |||| ||| || | ||||| ||
Sbjct 352 ATTGCCCGTGATGAAGCCTTACACCTCAATAGTACACAA--CACATTTTAGCTCTGATGC 295
Query 45866 AGATGGGTAAAGATGACCCAGAAATGGCAGAAATCGCGTATCAGTACGAAGAAGAAGCAA 45925
|| |||||||| ||||||||||||| |||||| || | ||| | |||||||
Sbjct 294 AGGGTGGTAAAGACGACCCAGAAATGGGAGAAATTGCTGCTGAGTGTAAGCAAGAAGCGT 235
Query 45926 CACAGATTTTCCTCGAAGTTTACGAGCAGGAAAAAGAATGGGCTGAACACTTATTCA 45982
| | ||| || ||| || || |||||||||||||| | |||||||||
Sbjct 234 ATGACTTATTCGTCAAAGCGGCGGAACAAGAAAAAGAATGGGCCAAGTACTTATTCA 178
>seq522862
Length=256
Score = 93.3 bits (102), Expect = 5e-14
Identities = 123/168 (73%), Gaps = 12/168 (7%)
Strand=Plus/Plus
Query 45295 TCTAACCTGCAATATCAAACCCTGTTAGATACCATTCAGGGACGTGGCCCTAACCTGGCG 45354
|| |||||| |||||||||| || ||||| | || ||||| ||| | |||||| ||||
Sbjct 2 TCAAACCTGAAATATCAAACACTATTAGACTCGATACAGGGTCGTAGTCCTAACATGGCA 61
Query 45355 TTTCTCCCGATTG---CCT---CTGATGTTTCAATGGAAACGTGGATCGAAACATGGGCT 45408
|| || ||||| | ||| |||| ||| || || ||||||||||| ||| |
Sbjct 62 TTACTTCCGATCGTATCCTTACCTGA-GTTA-----GAGACATGGATCGAAACCTGGTCC 115
Query 45409 TTCAGTGAAACAATTCATAGCCGCAGTTATACACACATTCAGCGTAAC 45456
|||||||| || || || |||| || || ||||| |||| ||||||
Sbjct 116 TTCAGTGAGACTATCCACAGCCAGAGCTACACACATATTCTTCGTAAC 163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 572785423005680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |