Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_031057.1 Length=180219 Score E Sequences producing significant alignments: (Bits) Value seq449735 201 1e-46 seq506238 152 6e-32 seq508109 118 1e-21 seq128994 111 2e-19 seq522862 93.3 5e-14 >seq449735 Length=3187 Score = 201 bits (222), Expect = 1e-46 Identities = 319/455 (70%), Gaps = 2/455 (0%) Strand=Plus/Plus Query 43397 TACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGCGTAG 43456 |||||||||| |||||||| ||||| ||||| || || || |||||| | || ||| Sbjct 35 TACCTACGCCAATTATGGCAGGTGTTCGTACGCCAACACGCCAGTTTAGCTCGTGTGTAT 94 Query 43457 TGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCTGCGATCGTGAAGT 43516 | || || | || || || | ||| | || || | ||||| || || || | Sbjct 95 TAATAGAGTGTGGCGACAGCCTTGATTCAATTAACGCCACCTCGTCTGCAATTGTTAAAT 154 Query 43517 ATATTTCACAACGCGCGGGTATCGGTGTTAATGCTGGACACATTCGCGCAATGGGTTCTA 43576 | | || ||||| || || || || |||| || || | |||||| ||| ||||| Sbjct 155 ACGTATCGCAACGTGCCGGCATTGGCATTAACGCAGGTCGCATTCGTGCACTGGGTAGCC 214 Query 43577 AAATCCGTGGTGGTGAAGCAGTAC-ATACAGGCGTGATCCCGTTCTGGAAACATATTCAG 43635 | || || ||| ||||| |||| |||| || || || || | || || |||| Sbjct 215 ACATTCGCAATGGCGAAGC-GTACCATACGGGTTGTATTCCTTTTTATAAGCACTTTCAA 273 Query 43636 ACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTGTATTAT 43695 |||||||||||| |||||| ||||| || || ||||| || || ||||| |||| || Sbjct 274 ACAGCGGTTAAAAGCTGTTCGCAAGGCGGTGTACGTGGCGGCGCAGCAACCTTGTTCTAC 333 Query 43696 CCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTGAG 43755 ||| | |||||||| ||||| ||||||||| | || || ||||| ||| || ||||| Sbjct 334 CCGCTTTGGCATTTAGAAGTAGAAAACCTGTTAGTACTTAAAAATAACCGCGGGGTTGAT 393 Query 43756 AATAACCGTATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATGTATAAGCGT 43815 | ||||| | ||||| | ||||| ||||| ||| |||| | | ||||| |||| Sbjct 394 GACAACCGCGTGCGTCATTTAGATTACGGCGTACAGTTTAATAAACTAATGTACTCGCGT 453 Query 43816 TTAATCAATAACGATTACATCACACTGTTCAGCCC 43850 ||||| || |||| ||||| || |||| ||||| Sbjct 454 TTAATTAAAGACGACTACATTACCTTGTTTAGCCC 488 >seq506238 Length=275 Score = 152 bits (168), Expect = 6e-32 Identities = 144/184 (78%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 53419 GAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGGAAGATGCTGTG 53478 |||||||| || || |||||||||||||| ||||||| ||||| ||||||||||||| Sbjct 221 GAAGGTGGTCAACATTTAAACGTGAATGTGTTACGTCGTGAAACATTGGAAGATGCTGTT 162 Query 53479 AAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGCTTT 53538 ||||| ||||| || || ||||| ||||| || || || |||||||| ||||| || ||| Sbjct 161 AAACACCCTGAAAAATATCCACAATTAACTATTCGTGTATCAGGTTACGCAGTGCGTTTT 102 Query 53539 AATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAGCATG 53598 || || | || ||||||||||||| ||||| | | | || ||||| |||| || Sbjct 101 AACTCATTAACACCAGAACAACAGCAAGACGTATTAACACGTACATTTACAGAAACATTG 42 Query 53599 TAAT 53602 |||| Sbjct 41 TAAT 38 >seq508109 Length=334 Score = 118 bits (130), Expect = 1e-21 Identities = 209/305 (69%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 94049 CCGCGTCCCTTTTGTTTCAGCCCCAGGAACACAATCGCATTGACTTGTTTCAGGCGCGGA 94108 ||||| |||||||| |||| | ||||||||| ||||| || | | || || Sbjct 305 CCGCGACCCTTTTGCTTCAATGATAAGAACACAATAGCATTTACATTAGCTAATCGTGGG 246 Query 94109 TCATTCTTCACAGCGTCAACCACGTTAAACGCGTCATCATAGGTTTTAGAGCTAACCATG 94168 ||| | |||| ||| ||| || || |||| || ||| || | || | ||| Sbjct 245 TCAGTTTTCATAGCTTCAGTTACAGTATACGCATCTTCAATAGTACGACCACTGATCATA 186 Query 94169 AAATGAAGGTTGATCTGCTGTTGTCCTGCTTCTGACAGGTTCGCTACCGAGTCGAAAGCG 94228 || || |||||||| |||| ||| || || | | | ||| || ||| || || Sbjct 185 AAGTGTAGGTTGATTTGCTTTTGACCAGCAGCGGTTAAACGCGCAACACTGTCAAACGCT 126 Query 94229 ACATCGAAGCCAGCATGTTTATAAACCGATACCGCAACAGCCCCAGCAACCGCAGCCAAA 94288 ||||| || ||||| ||||||||||| ||||| |||| ||| |||||||| | || || Sbjct 125 ACATCAAAACCAGCGTGTTTATAAACTGATACAGCAATAGCACCAGCAACTGATGCTAAT 66 Query 94289 CGCGCTGCAACGTCTTTTGATACATCGGCAATGGTAAGGTTCGGCACAATGCCTTTAGAA 94348 || ||||| |||| ||| ||||| ||||| || || || || | ||| |||| ||| Sbjct 65 TTAGCAGCAACTTCTTCTGACACATCAGCAATTGTTAGATTTGGGATAATACCTTGTGAA 6 Query 94349 CGCGC 94353 || || Sbjct 5 CGAGC 1 >seq128994 Length=861 Score = 111 bits (122), Expect = 2e-19 Identities = 204/297 (69%), Gaps = 4/297 (1%) Strand=Plus/Minus Query 45688 TATCTGTGTATGCACGCTGTCAACGCTCTGGAAGCGATTCGTTTCTATGTCTCGTTTACC 45747 ||| |||| ||| | ||||| || | ||||||||||| ||||||||| ||| || Sbjct 472 TATTTGTGCATGATGTCAGTCAATGCCTTAGAAGCGATTCGCTTCTATGTCAGTTTTGCC 413 Query 45748 TTTACGTTCAACTTTGCCGAACAGGGCAAGATGGAAGGTAACGCAAAGATCATGCGTCTG 45807 | | |||| |||||| |||| | ||||||||||| || || || || || | Sbjct 412 TGTTCGTTTGCCTTTGCTGAACGTCGTGTTATGGAAGGTAATGCTAAAATTATTCGCTTA 353 Query 45808 ATTGCCCGTGATGAAGCACTTCATCAGAAAGGTACTCAAAGCAAGATCCGACTCTG--GC 45865 ||||||||||||||||| | || | || |||| ||| || | ||||| || Sbjct 352 ATTGCCCGTGATGAAGCCTTACACCTCAATAGTACACAA--CACATTTTAGCTCTGATGC 295 Query 45866 AGATGGGTAAAGATGACCCAGAAATGGCAGAAATCGCGTATCAGTACGAAGAAGAAGCAA 45925 || |||||||| ||||||||||||| |||||| || | ||| | ||||||| Sbjct 294 AGGGTGGTAAAGACGACCCAGAAATGGGAGAAATTGCTGCTGAGTGTAAGCAAGAAGCGT 235 Query 45926 CACAGATTTTCCTCGAAGTTTACGAGCAGGAAAAAGAATGGGCTGAACACTTATTCA 45982 | | ||| || ||| || || |||||||||||||| | ||||||||| Sbjct 234 ATGACTTATTCGTCAAAGCGGCGGAACAAGAAAAAGAATGGGCCAAGTACTTATTCA 178 >seq522862 Length=256 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/168 (73%), Gaps = 12/168 (7%) Strand=Plus/Plus Query 45295 TCTAACCTGCAATATCAAACCCTGTTAGATACCATTCAGGGACGTGGCCCTAACCTGGCG 45354 || |||||| |||||||||| || ||||| | || ||||| ||| | |||||| |||| Sbjct 2 TCAAACCTGAAATATCAAACACTATTAGACTCGATACAGGGTCGTAGTCCTAACATGGCA 61 Query 45355 TTTCTCCCGATTG---CCT---CTGATGTTTCAATGGAAACGTGGATCGAAACATGGGCT 45408 || || ||||| | ||| |||| ||| || || ||||||||||| ||| | Sbjct 62 TTACTTCCGATCGTATCCTTACCTGA-GTTA-----GAGACATGGATCGAAACCTGGTCC 115 Query 45409 TTCAGTGAAACAATTCATAGCCGCAGTTATACACACATTCAGCGTAAC 45456 |||||||| || || || |||| || || ||||| |||| |||||| Sbjct 116 TTCAGTGAGACTATCCACAGCCAGAGCTACACACATATTCTTCGTAAC 163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572785423005680