Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_031062.1 Length=75147 Score E Sequences producing significant alignments: (Bits) Value seq400345 123 1e-23 seq512587 122 4e-23 seq184512 109 3e-19 seq500342 105 3e-18 seq523657 104 1e-17 seq516110 100 1e-16 seq501051 93.3 2e-14 >seq400345 Length=893 Score = 123 bits (136), Expect = 1e-23 Identities = 210/302 (70%), Gaps = 12/302 (4%) Strand=Plus/Minus Query 60981 CACCTGCATACAGAACAGTACCAGCAGCAGCCAGCAGGTCTTTTTGCAGAACAGCTTCGG 61040 |||| |||| ||||| ||||||||| |||| || |||||| | || |||||| Sbjct 366 CACCACCATAACGAACAACACCAGCAGCGTTAAGCAAATCAATTTGCAAAGCATCTTCGG 307 Query 61041 TCATCTGTACAGCACCGTTCATCAGCTC--GGTAGA----CAGGTGATCCATCAGGCCAT 61094 | || | |||||| | |||| || ||| || || || | ||||| Sbjct 306 TGATTTCATTAGCACCCATGATCATTTCACGGTTGATGTGCATTTG-TAAATCAG----- 253 Query 61095 CATCAGAGTCGAAGTCCATAGACTCTTGAGTGAACTCATGGAAGAAACCGAACTTGTGAA 61154 |||||| ||| ||||| | |||||||| || | |||| ||||||||| || || | | Sbjct 252 CATCAGTGTCAAAGTCTAACGACTCTTGGTTGTATTCATCGAAGAAACCAAATTTCTCTA 193 Query 61155 TTGAGCCTTCACGTTCCAGACGGGTGAAGCCAACACGGTTAACACGACCACCATTTTCGG 61214 ||||||||| |||| | ||| ||| ||||| ||||||||||||||||| ||||| Sbjct 192 ATGAGCCTTCCAGTTCAATACGACGGAAACCAACGCGGTTAACACGACCACCGTTTTCAC 133 Query 61215 TCAGCAGTGGCAGCTTGTTGGTGATAGTACCAATGTCTTTACTGGAGCCATACAGGTTCC 61274 | || | || ||||| | || ||||||| |||||| || || ||||| | ||| | Sbjct 132 TTAGTACAGGTAGCTTAGACGAAATCGTACCAACGTCTTTGCTTGAACCATATAAGTTAC 73 Query 61275 CA 61276 || Sbjct 72 CA 71 >seq512587 Length=355 Score = 122 bits (134), Expect = 4e-23 Identities = 226/328 (69%), Gaps = 3/328 (1%) Strand=Plus/Plus Query 30961 TGATGGTTGGCATTATCTGTTCGGTAACTTCAA-CCTCGGTGGAACGTTATCCGGGCGGT 31019 ||||||| | |||||| ||||||||||| ||| ||||| || || || | Sbjct 29 TGATGGTGTGTGGTATCTGCATGGTAACTTCAAACCTTGGTGGTACTGTAAGTGGAAGAC 88 Query 31020 TAAGCTCATCCGATCCAAACCTGCAAAACCTACC-AGCGAAAGAGAATAAATACTCCAAG 31078 | || ||||| | || ||| | |||||| |||| ||| | | | | ||| | ||| Sbjct 89 TGAGTTCATCAGGACCCAACTTACAAAACTTACCTAGC-AGCGGCACCATATATGCTAAG 147 Query 31079 CTGATCAAGTCTTGCTTCCAAGCTCCACCGGGTTGGATGTTCTGTGGTCTGGACTTTGCA 31138 | || ||| ||| || | || || |||||||| | ||| |||||| || Sbjct 148 CATATTAAGCGTTGTTTTAAGGCACCTAAAGGTTGGATATGGGCTGGCGCAGACTTTTCA 207 Query 31139 AGTCTGGAAGACAGGATCTCTGCTGTTACCACTAAAGACCCAAATAAACTGAAGGTGTAT 31198 | | ||||| || || || ||| | || ||| || |||||||| || |||||||| Sbjct 208 TCTTTAGAAGATAGAATTTCAGCTCTAACAACTCGTGATCCAAATAAGCTAAAGGTGTAC 267 Query 31199 ACCGATGGTTATGACGGTCACTGTCTTCGTGCTTATGCTTACTTTGGTGAGCAGATGCCA 31258 |||||||||||||| ||||||||||| || || ||| ||||||| || | ||||||| Sbjct 268 ACCGATGGTTATGATGGTCACTGTCTACGAGCCTATTCTTACTTCGGGCATATGATGCCA 327 Query 31259 GACATTGTGGATACTGTAGAGTCCATCA 31286 || ||| | ||||| | || || |||| Sbjct 328 GATATTATTGATACCATTGATTCAATCA 355 >seq184512 Length=2755 Score = 109 bits (120), Expect = 3e-19 Identities = 207/298 (69%), Gaps = 5/298 (2%) Strand=Plus/Plus Query 61092 CATCATCAGAGTCGAAGTCCAT-AGACTCTTGAGTGAACTCATGGAAGAAACCGAACTTG 61150 || |||||||||| |||| ||| ||| |||| || | ||| || | ||| ||||| Sbjct 819 CAGCATCAGAGTCAAAGTTCATTAGA-TCTTTAGACCATTCAGTAAACATACCAAACTTC 877 Query 61151 TGAATTGAGCCTTCACGTTCCAGACGGGTGAAGCCAACACGGTTAACACGACCACCATTT 61210 | || | |||||| || ||| |||| |||||||||||||||||||||||| || Sbjct 878 TCAAACGTACCTTCAATCTCTTTACGTTTGAAACCAACACGGTTAACACGACCACCAGTT 937 Query 61211 TCGGTCAGCAGTGGCAGCTTGTTGGTGATAGTACCAATGTCTTTACTGGAGCCATACAGG 61270 || || | || || || | || ||||||||||||| | || || | | Sbjct 938 TCACCAAGTAAAGGAAGTTTACCTGGAATCAAACCAATGTCTTTAGAGCTACCGTATAAG 997 Query 61271 TTCCCATTAGCAATGGTCA-CACCAGAAGCATCGATGCCCTGATCGTTAATGTTACGGTC 61329 || |||||| | | | ||| | || | ||||| || |||||||||||||||||| ||| Sbjct 998 TTACCATTAACTA-GTTCAGCGCCTGCTGCATCAATACCCTGATCGTTAATGTTAGCGTC 1056 Query 61330 GTCCAGCAGTGGTACGTATTCGTACACTTTGATGGTTTTACCGTAGTTCTTCGGCATG 61387 || |||| |||| || | |||| || || | |||| ||||||| |||||| Sbjct 1057 ATCTAGCA-AGGTAGATAATGGTACTGCTTAATTACTGTACCTGAGTTCTTAGGCATG 1113 Score = 102 bits (112), Expect = 4e-17 Identities = 143/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 60336 CAAGACGTTCTGCACGCTTAACCAGAATACCGTAGTACCACTTGATGGAGCTGAAACCAG 60395 ||| ||| |||| ||| | ||| || ||||| |||| ||||| ||||| || || Sbjct 117 CAATACGCTCTGTACGTAGACCCATAAAGCCGTACCACCATTTGATAGAGCTAAAGCCCA 176 Query 60396 TCTCACCGTATGGATCGTTACGGTCAGCAGTTTCTTTACCCGGCATCTTGGTCATGATGG 60455 |||| || || ||||||||||||||||||||||| |||| ||| | || | | Sbjct 177 TCTCGCCATAAGGATCGTTACGGTCAGCAGTTTCAGTACCTGGCTTACGTGTAACAGTTT 236 Query 60456 TGAAGTTCACAGTCTTACCGTTGGTCTGGAAACCAATGGTAGAGAATGCGTCATCACCAA 60515 || || || |||||||| || ||||||||||| |||| |||| |||||||| | Sbjct 237 CAAACTTATTAGACTTACCGTCAGTTTGGAAACCAATAGTAGTAAATGATTCATCACCTA 296 Query 60516 CAACCAGCATTGG--ATACA 60533 ||| || | ||| ||||| Sbjct 297 CAATAAGAAGTGGGAATACA 316 >seq500342 Length=215 Score = 105 bits (116), Expect = 3e-18 Identities = 128/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 65131 TTGAACAGCTTGTTTGAACCAAGGAAGGGTTCGGTCAGAGCTGAGTAACGCCATTCTGCC 65190 ||| | | |||||| ||||||||||| || || ||| || ||||||||||| || Sbjct 21 TTGCAGATCTTGTTGGAACCAAGGAAAGGCTCACTCAATGCAGAGTAACGCCACTCGTTG 80 Query 65191 TGACGACGAATCAGCTTAGGCTGAACACTGGAACGACCTTTCACCTTTTTAGGCTTGGCC 65250 | |||||||||||||||||| |||| |||||||| || ||||||||||| || Sbjct 81 TTACGACGAATCAGCTTAGGGGCAACAGACGAACGACCCTTAACCTTTTTAGGTTTCTGG 140 Query 65251 TTACCAGTCACATTCATC-AGGTCATTCCACTCATTGATCTTACCGATCTGA 65301 |||| || |||| | || || ||||||| | ||||||| |||||||| Sbjct 141 GAGCCAGAGAC-TTCAACGAGTTCTTTCCACTTGTCGATCTTAGCGATCTGA 191 >seq523657 Length=447 Score = 104 bits (114), Expect = 1e-17 Identities = 86/104 (83%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 61103 TCGAAGTCCATAGACTCTTGAGTGAACTCATGGAAGAAACCGAACTTGTGAATTGAGCCT 61162 || ||||||| ||||||||||||| | |||| ||||||||||||||| | ||||| ||| Sbjct 104 TCAAAGTCCAAAGACTCTTGAGTGTATTCATCGAAGAAACCGAACTTCTCCATTGAACCT 45 Query 61163 TCACGTTCCAGACGGGTGAAGCCAACACGGTTAACACG-ACCAC 61205 ||| |||| | ||| |||| || || ||||||||||| ||||| Sbjct 44 TCAAGTTCTAAACGCTTGAAACCGACTCGGTTAACACGAACCAC 1 >seq516110 Length=283 Score = 100 bits (110), Expect = 1e-16 Identities = 122/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 61181 AAGCCAACACGGTTAACACGACCACCATTTTCGGTCAGCAGTGGCAGCTTGTTGGTGATA 61240 |||||||||||||||||||||||||| |||| | || |||| ||| | |||| Sbjct 255 AAGCCAACACGGTTAACACGACCACCTGTTTCTGATAGAGCAGGCATCTTAGCAGGGATA 196 Query 61241 GTACCAATGTCTTTACTGGAGCCATACAGGTTCCCATTAGCAATGGTCA-CACCAGAAGC 61299 | |||||| || ||||| ||||| || ||||| || || | | ||| |||||| || Sbjct 195 GAACCAATATCCTTACTTGAGCCGTATAGGTTACCGTTTACGGT-TTCAGCACCAGTGGC 137 Query 61300 ATCGATGCCCTGATCGTTAATGTTACGGTCGTCCAGCAGTGGTA 61343 ||| | ||||||||||||||| || || |||| ||||||| Sbjct 136 ATCCAAGCCCTGATCGTTAATATTGGCATCATCCAATAGTGGTA 93 >seq501051 Length=457 Score = 93.3 bits (102), Expect = 2e-14 Identities = 168/246 (68%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 36318 CTACATGAAGTTAGCCAAGTATATCGCTGCTGTTGATGGCGATGTAACTCATGCTGACTT 36377 |||| | || ||||| |||||||| ||| | || ||| || || |||||| |||||| Sbjct 327 CTACGTTAAATTAGCTAAGTATATTGCTACAGTACGTGGGGAAGTCTCTCATGTTGACTT 268 Query 36378 GAATGAGGCATTGCCGTTCTATAAGTCTGGTCAGGCAGCTCGTAATGAGATCATGACCAT 36437 | ||||| || || ||||| || || | |||| |||| | | | | | Sbjct 267 GGTTGAGGACTTACCTTTCTACAAAGGCAGTGAATCAGCCAAACGTGAGTTACTTAACTT 208 Query 36438 GGCTACGGCGTGGGGCTATAAGAAGCACATCATCATTAAGAAGAAGTTCGATAGTGGTAT 36497 |||| |||| ||||||||||| |||| ||||||||||| || || |||||| Sbjct 207 AGCTATTGCGTATGGCTATAAGAATAACATTATCATTAAGAAATTATTTAATGATGGTAT 148 Query 36498 CGAGTTCTTCCAAGGTGAGACGCTGAAAGAAACTGATCTGGATAAGATCCGTGTCTCTTA 36557 |||||||| | |||||||| || |||| ||||| | || || || | | ||| | Sbjct 147 TGAGTTCTTACGTGGTGAGACACTTCAAGAGTCTGATATAGAAAACATGTCTATGTCTCA 88 Query 36558 TAGCGA 36563 ||| || Sbjct 87 TAGTGA 82 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238806293235576