Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq498792 109 2e-19 seq471061 80.6 8e-11 >seq498792 Length=554 Score = 109 bits (120), Expect = 2e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 40186 GCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGT 40245 |||| || || || || ||||| ||||| |||||||| | || ||| | |||| Sbjct 1 GCATCGATACCCGTTCCGGGTTAAGGAATCGCTCGAACAGCAGGTCGTATTCCAGAGGGT 60 Query 40246 CCAGGTCTGTGATGCCGAGGCAG-TAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCG 40304 | ||||| || || | ||| ||||| |||||||| |||||| |||| ||||| || Sbjct 61 CAAGGTCAGTAAT-CTTTTGCACATAGGCCACCAGCGACCCGGCACCCGAACCACGGCCA 119 Query 40305 GGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAG 40364 || || || |||||||| ||||||||| ||| ||||| |||| ||||||| Sbjct 120 GGACCTACTGGTACGCCGTTACTCTTGGCCCACTGGATAAAGTCCATCACGATCAGGAAG 179 Query 40365 TAGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCG 40403 || ||||||||||| |||||| || || || | |||| Sbjct 180 TAACCCGGGAACCCCATCTGGATAATGATATCCAGCTCG 218 >seq471061 Length=546 Score = 80.6 bits (88), Expect = 8e-11 Identities = 139/201 (69%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 40167 AAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCT-CGAAGAT 40225 ||||| || || | |||||||||||||| ||||| ||||| | || |||| | || | Sbjct 60 AAGTCAATATCGAAATCGGGCATGGACACACGCTCAGGGTTTAAAAAGCGCTACAAATAA 119 Query 40226 GAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACC 40285 | ||| | || ||||| ||||| || || ||| | || || || || || || Sbjct 120 TAAGTCGTAATGAATAGGGTCGAGGTCGGTAATATTGAGCGAATAAGCAACGAGTGAGCC 179 Query 40286 GGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40345 ||| | || ||||| || || ||||| ||||| || | || ||||| | ||| || Sbjct 180 TGCACCAGAACCACGACCAGGACCGACTGGTACGCCATTGGCTTTTGCCCAACGGATAAA 239 Query 40346 GTCGGCGACGACCAGGAAGTA 40366 ||| ||||| |||||||| Sbjct 240 GTCCATGACGATGAGGAAGTA 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159141467560656