Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_031085.1 Length=166634 Score E Sequences producing significant alignments: (Bits) Value seq449735 203 3e-47 seq506238 138 1e-27 seq509673 109 6e-19 seq487923 107 2e-18 seq351952 96.9 4e-15 seq511551 95.1 1e-14 seq326422 89.7 5e-13 >seq449735 Length=3187 Score = 203 bits (224), Expect = 3e-47 Identities = 408/595 (69%), Gaps = 19/595 (3%) Strand=Plus/Minus Query 140299 AATAGTTCACGGGCTTTAATGCGCTTTTTACGAAT--ATTAGGGTCTTTTTCTGCTGCTT 140356 || |||||| ||||||||||| ||||||||||| ||| | |||| ||| | | Sbjct 611 AACAGTTCAATAGCTTTAATGCGTTTTTTACGAATTGATTCG--TCTTGTTCGTATTTTA 554 Query 140357 CGTATAATTCACGG-AAACG-GTCTTGGTCTTTAAAATAAGAATAATAAAGCTCGCCACC 140414 | |||| | || |||| ||||||||||| |||| | | || ||||| ||| Sbjct 553 C--ATAAAGCGCGTCAAACTCGTCTTGGTCTTCAAAAAATGCATCGTAAAG---GCCTGG 499 Query 140415 CATTTCATGCGGACTGAACAAAGTAATGTAGTCGTTCTTTCCAAAACGTTCCATCATTAG 140474 || ||| || || ||||| ||||||||||||| || ||||| |||||| Sbjct 498 CACATCAGAGGGGCTAAACAAGGTAATGTAGTCGTCTTTAATTAAACGCGAGTACATTAG 439 Query 140475 ATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACCTTTGTT 140534 | ||| | || || || ||||| | |||||| | |||||| || || || || ||| Sbjct 438 TTTATTAAACTGTACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTT 379 Query 140535 ATTTTTCAAAACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATA--ATAAGCAGTA 140592 |||||| | || | || ||||| ||||| |||||||||| || || | ||| || Sbjct 378 ATTTTTAAGTACTAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAG--GTT 321 Query 140593 GCAGCGCCGCCACGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTC 140652 || ||||||||||| | || ||||| || || |||||| || || ||||| || || Sbjct 320 GCTGCGCCGCCACGTACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTA 261 Query 140653 CAAAAAGGAATAACACCAGTATG--ACGTACTTCACCCATGCCAATCTTAGAACCTTCGG 140710 ||||||||||| ||| ||||| ||| |||| || ||| ||| | ||| | Sbjct 260 TAAAAAGGAATACAACCCGTATGGTACG--CTTCGCCATTGCGAATGTGGCTACCCAGTG 203 Query 140711 CACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTG 140770 ||||||| ||| ||||||| ||||| || || |||| || | |||| |||||||| Sbjct 202 CACGAATGCGACCTGCGTTAATGCCAATGCCGGCACGTTGCGATACGTATTTAACAATTG 143 Query 140771 AAGCGGAAGCCTTATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACACATGAAC 140830 || || | || || || | | || || ||| || | ||||| || | Sbjct 142 CAGACGAGGTGGCGTTAATTGAATCAAGGCTGTCGCCACACTCTATTAATACACACGAGC 83 Query 140831 TAAACTGTCGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAAT 140885 ||||||| || || || |||||| ||| |||||||| || || |||| |||||| Sbjct 82 TAAACTGGCGTGTTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAGTGAAAT 28 >seq506238 Length=275 Score = 138 bits (152), Expect = 1e-27 Identities = 141/184 (77%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 62744 ATTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 62803 ||||||| | || ||||| ||||| | | ||||| |||| ||||| || || | | Sbjct 38 ATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATG 97 Query 62804 AGTTAAAGCGAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 62863 ||||||| || ||||| || || |||||||| || || | || ||||||||||| || | Sbjct 98 AGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGT 157 Query 62864 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCAC 62923 | ||||| |||||||||| ||||||||||| | || || ||||| | |||||||||| Sbjct 158 GTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCAC 217 Query 62924 CTTC 62927 |||| Sbjct 218 CTTC 221 >seq509673 Length=441 Score = 109 bits (120), Expect = 6e-19 Identities = 142/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 140485 TGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACCTTTGTTATTTTTCA-A 140543 || || || |||||||||||||| | ||||| ||||| || || ||||||||||| Sbjct 228 TGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATTTTTCAGT 287 Query 140544 AACAAGAA-GATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGC 140602 | ||| || || |||||||| |||||||| | || ||| | || || || |||| Sbjct 288 ACCAATAATGA--CTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGCACCGC 345 Query 140603 CACGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAA 140662 |||| | || ||||||||||| ||||||||||||| || || |||| | || || | Sbjct 346 CACGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAATGGGA 405 Query 140663 TAACACCAGTATG 140675 || ||| ||||| Sbjct 406 TACAACCCGTATG 418 >seq487923 Length=1072 Score = 107 bits (118), Expect = 2e-18 Identities = 150/202 (74%), Gaps = 9/202 (4%) Strand=Plus/Minus Query 24855 ATACTAATTTATCTAATACGTATTTTTGCCATGCATAATCATTACGGAATCCGAAGACCA 24914 ||| |||||||| |||| || || |||||||| ||||||||| |||||||| || Sbjct 528 ATAGTAATTTAT---ATACATACTTATGCCATGCTAAATCATTACCAAATCCGAATACTG 472 Query 24915 CGTCATTTGAGCGCATGCTT-ACTAC-TGCATTGACTTTCTTATCACGAATCAGGTACT- 24971 ||||| ||||||| || || || | | ||| | ||| ||||||||||| | |||| Sbjct 471 CGTCACATGAGCGC-TGATTGACAATATAGATTAA-TTTATTATCACGAATAAA-TACTT 415 Query 24972 GTACTGTATTAGTACACATGAAATCTGACATACCATCTTTATTGTAATCAAATTGCATGG 25031 | || |||||||||| || ||||||||||| ||| |||| | ||| ||| || | Sbjct 414 GAACATTATTAGTACAAATAAAATCTGACATTTCATTAGTATTCCATTCACTTTGAATAG 355 Query 25032 ATGGACGAGTATAAATCATGAT 25053 | || | |||||||||||| || Sbjct 354 AAGGTCTAGTATAAATCATAAT 333 >seq351952 Length=416 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 62758 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 62817 ||||||||||| | ||| || || ||| ||||| | ||| | |||||||| || ||| Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTACT 93 Query 62818 GCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 62877 || || || |||||||| || || | || ||||| || || |||| | | |||||| Sbjct 94 GCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATCC 153 Query 62878 TCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACCTTCAAT 62930 | ||||||| || || || ||||| | |||||||||||||||||| Sbjct 154 AATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCAAT 206 >seq511551 Length=634 Score = 95.1 bits (104), Expect = 1e-14 Identities = 192/278 (69%), Gaps = 18/278 (6%) Strand=Plus/Minus Query 43695 CGAGGAAGATTCAATGTTACAACACCAAGATTATTACGTCCATCAAGAATTTCATTGCCA 43754 ||||| || || || |||| ||||| | || ||||||||||||| | ||| || ||| Sbjct 492 CGAGGTAGGTTTAAGCTTACCACACCTAAGTTGTTACGTCCATCAAACACTTCCTTACCA 433 Query 43755 GTCGAATCTTTCCATACGCTCAA--GAAACTACGGCAACCCAT---TGGAGAAACAGGAA 43809 | || ||||| |||| ||| | ||| || | ||| ||||| || || | | Sbjct 432 GAAGAGTCTTT--ATACTCTCCAAGGAAGCTCCTGCAGCCCATGCTTGCCTTAAAACCAC 375 Query 43810 CAGATGAACCAGTGATAGCTTTATTGTTCTTAGCTGAAATAATATCAGGATACATCCTTT 43869 ||| |||| | | ||| || ||| ||| |||||||||| ||||| | | Sbjct 374 CAGT--AACCTCTACAATCTTA-----TCGTAGTTGA--TAATATCAGGGTACATACGCT 324 Query 43870 TGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTTCGGATCGTCTT-TATAAAGA 43928 | || |||||||||||||| | ||| ||||||| |||||| || || || | | ||||| Sbjct 323 TACTGGCACACTCTAGAGCTAACTGTTTAATATTATAGTTTGGGTCTTCCTGTTTAAAG- 265 Query 43929 TTAACACCTTCTTCAACGAACATAACAAGCTTAGGGAA 43966 || ||||| |||| || | | |||||||||||| Sbjct 264 TTGACACCGTCTTTAATAGTTAGGATAAGCTTAGGGAA 227 >seq326422 Length=2068 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/115 (79%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 71040 GCGCTCTACCAAACTGAGCTACAC--GGAGTAAATTAAATTGGAGCGGATAATGAGAATC 71097 |||||||||||| |||||||| | | | | |||| |||||||| | | ||||| Sbjct 291 GCGCTCTACCAA-CTGAGCTATATCAGCATCACCATAAACTGGAGCGGGCAGCGGGAATC 349 Query 71098 GAACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GCCATTATACGATATCCGC 71151 |||| | ||||||||| ||||||| |||||||||| ||||||||||||| |||| Sbjct 350 GAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529598980792480