Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_031087.1 Length=168272 Score E Sequences producing significant alignments: (Bits) Value seq449735 242 4e-59 seq506238 111 2e-19 >seq449735 Length=3187 Score = 242 bits (268), Expect = 4e-59 Identities = 336/467 (72%), Gaps = 4/467 (1%) Strand=Plus/Minus Query 141200 GGGACTAAACAGAGTGATGTAATCATTCTTAATCAAACGTTCAATCATCAGGTTATTAAT 141259 ||| ||||||| || ||||| || | ||||| ||||| ||| || ||||||| Sbjct 489 GGGGCTAAACAAGGTAATGTAGTCGTCTTTAATTAAACGCGAGTACATTAGTTTATTAAA 430 Query 141260 CTGAACGCCATAATCTAAATGACGAATACGGTTTTCATCTACACCTTTGTTGTTCTTAAG 141319 ||| ||||| |||||||||||||| | ||||| ||||| || || ||| || ||||| Sbjct 429 CTGTACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAG 370 Query 141320 TACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAGTGTCGCCGCGCCACC 141379 ||| | |||||||| ||||| || ||||| | || ||| ||| || || ||||| || Sbjct 369 TACTAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAGGTTGCTGCGCCGCC 310 Query 141380 ACGGACTCCACCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTGTTTCCAGAAAGGAAT 141439 ||| || || ||||| || ||| |||||| |||||||| ||||| || | |||||||| Sbjct 309 ACGTACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAAT 250 Query 141440 AACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGAACCCTCGGCGCGAATCATGCC 141499 | || ||||| | |||| || | ||| | |||| || ||||| || Sbjct 249 ACAACCCGTATGGTACGCTTCGCCATTGCGAATGTGGCTACCCAGTGCACGAATGCGACC 190 Query 141500 TGCATTAATACCAATACCTGCACGCTTACTGAT--GTATTTCGTAATTGATGCAGCAGCT 141557 ||| ||||| ||||| || ||||| || | ||| |||||| ||||| | | | Sbjct 189 TGCGTTAATGCCAATGCCGGCACG-TTGC-GATACGTATTTAACAATTGCAGACGAGGTG 132 Query 141558 TCGTTAATTGAATTAAGACTATCACCACCTTCAATAACCACGCATGAACTGAACTGGCGT 141617 |||||||||||| ||| || || |||| || || | || || || || ||||||||| Sbjct 131 GCGTTAATTGAATCAAGGCTGTCGCCACACTCTATTAATACACACGAGCTAAACTGGCGT 72 Query 141618 GTCGGAGTACGAACACCAGACATAATTGGTGTTGGCAATGAAATCTT 141664 || || ||||||||||| | ||||||||| || || | |||||| || Sbjct 71 GTTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAGTGAAATTTT 25 >seq506238 Length=275 Score = 111 bits (122), Expect = 2e-19 Identities = 135/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 59989 ATTATAGTGCCTCTGTGAAAGTACGGGCGATAACGTCGCGCTGCTGTTCTGGTGTCAGGG 60048 |||| | || ||||| || ||||| | | ||||| |||| ||||||||||| | | Sbjct 38 ATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATG 97 Query 60049 AGTTAAAGCGCACCGCGTAGCCGGAAACACGAATGGTAAGCTGCGGGTATTTTTCCGGAT 60108 ||||||| ||||| ||||| || || |||||||| || | || || |||||||| || | Sbjct 98 AGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGT 157 Query 60109 GCTCAACCGCGTCCAGCAGAGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGC 60168 | | ||| || || || ||||| ||||| | ||| || ||||| | || ||||| | Sbjct 158 GTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCAC 217 Query 60169 CTTC 60172 |||| Sbjct 218 CTTC 221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534806149901440