Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_031090.1 Length=169621 Score E Sequences producing significant alignments: (Bits) Value seq449735 201 1e-46 seq506238 140 3e-28 seq509673 136 4e-27 seq351952 113 5e-20 seq128994 96.9 4e-15 seq505215 84.2 2e-11 >seq449735 Length=3187 Score = 201 bits (222), Expect = 1e-46 Identities = 487/734 (66%), Gaps = 5/734 (1%) Strand=Plus/Plus Query 61724 AAGTTTCATTGCCTACTCCAATTATGGCAGGTGCTCGTACTCCGACTCGCCAGTTCT-CT 61782 || ||||| | ||||| |||||||||||||||| |||||| || || |||||||| || Sbjct 26 AAATTTCACTACCTACGCCAATTATGGCAGGTGTTCGTACGCCAACACGCCAGTTTAGCT 85 Query 61783 AGTTGTGTAGTTATTGAAGCCGGTGATTCGTTAAAATCTATTAACAAAACTTCAGCATCA 61842 || ||||| | || || || || | | || |||||| || || | || Sbjct 86 CGT-GTGTATTAATAGAGTGTGGCGACAGCCTTGATTCAATTAACGCCACCTCGTCTGCA 144 Query 61843 ATTATTGAATATATTTCTAAACGAGCTGGTATAGGTATCAACGTTGGTATGCTTCGTGCA 61902 ||| || |||| | || |||| || || || || || |||| ||| |||||||| Sbjct 145 ATTGTTAAATACGTATCGCAACGTGCCGGCATTGGCATTAACGCAGGTCGCATTCGTGCA 204 Query 61903 GAAGGTTCTAAGATCGGTATGGGCGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAA 61962 ||| | || | | ||||||| ||||||||| |||||| || | || Sbjct 205 CTGGGTAGCCACATTCGCAATGGCGAAGCGTACCATACGGGTTGTATTCCTTTTTATAAG 264 Query 61963 CATTTCCAAACTGCAGTAAAATCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACA 62022 || || ||||| || || ||| ||||| ||||| ||| | ||||| || || || || Sbjct 265 CACTTTCAAACAGCGGTTAAAAGCTGTTCGCAAGGCGGTGTACGTGGCGGCGCAGCAACC 324 Query 62023 GCGTATTATCCGATGTGGCACTTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAA 62082 || || ||| | ||||| ||||||||||| ||||| ||||| || ||||||||| Sbjct 325 TTGTTCTACCCGCTTTGGCATTTAGAAGTAGAAAACCTGTTAGTACTTAAAAATAACCGC 384 Query 62083 GGCGTGGATGAAAACCGTATTCGACATATGGACTACGGAATTCAGATTAATGACCTTATG 62142 || || ||||| ||||| | || ||| | || ||||| | ||| ||||| | || ||| Sbjct 385 GGGGTTGATGACAACCGCGTGCGTCATTTAGATTACGGCGTACAGTTTAATAAACTAATG 444 Query 62143 ATGGAACGCCTTGGTAAAAATGATTATATTACTTTATTTAGCCCTCACGAAATGTCAGGC 62202 || | |||| | || || ||||| || |||||||| || || ||||| Sbjct 445 TACTCGCGTTTAATTAAAGACGACTACATTACCTTGTTTAGCCCCTCTGATGTGCCAGGC 504 Query 62203 GAACTATACTACTCGTTCTTTGAAGATCAAGATAAATTCCGTGAGCTTTATGAGAAAGCT 62262 || ||| | | || |||||||| ||||| | || | |||||||| ||| Sbjct 505 ---CTTTACGATGCATTTTTTGAAGACCAAGACGAGTTTGACGCGCTTTATGTAAAATAC 561 Query 62263 GAAAAAGACCCAACAATCAGAAAGAAAAGAATCAAAGCACTAGAACTCTTTGAATTGTTC 62322 ||| ||||| | |||| | || ||| | || ||||| | ||||| || | |||| Sbjct 562 GAACAAGACGAATCAATTCGTAAAAAACGCATTAAAGCTATTGAACTGTTCTCAATGTTT 621 Query 62323 ATGACTGAACGTTCTGGCACTGCTCGAATTTATCCACAGTTTGTTGATAACACGAATAAC 62382 | |||||| | | || | ||| ||||| ||| ||||| || |||| Sbjct 622 GCGCAAGAACGTGCAAGTACCGGTCGTATTTACTTACAAAACGTTGACCACTGTAATACG 681 Query 62383 TACACTCCGTTTATTCGTGAAAAAGCTCCAATTCGTCAGAGTAACTTATGTTGTGAAATC 62442 ||| ||||| ||| | || || || ||||| || ||| ||||||| ||||| Sbjct 682 CACAGCCCGTTCATTGCTAAAGTGGCACCTATTCGCCAATCTAATTTATGTTTAGAAATT 741 Query 62443 GCTATTCCAACTAA 62456 || | |||||||| Sbjct 742 GCATTACCAACTAA 755 >seq506238 Length=275 Score = 140 bits (154), Expect = 3e-28 Identities = 133/170 (78%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 142541 GGTGGTCAACACCTGAACGTTAATGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 142600 ||||||||||| | ||||| ||||| | ||||||||||| |||||||||| ||||| Sbjct 218 GGTGGTCAACATTTAAACGTGAATGTGTTACGTCGTGAAACATTGGAAGATGCTGTTAAA 159 Query 142601 CATCCAGAAAAATATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 142660 || || ||||||||||| || || || || |||||||| ||||| ||||| || |||||| Sbjct 158 CACCCTGAAAAATATCCACAATTAACTATTCGTGTATCAGGTTACGCAGTGCGTTTTAAC 99 Query 142661 TCTCTGACTCCGGAACAGCAGCGTGACGTTATCGCTCGTACCTTTACTGA 142710 || | || || ||||| |||| ||||| | | ||||| ||||| || Sbjct 98 TCATTAACACCAGAACAACAGCAAGACGTATTAACACGTACATTTACAGA 49 >seq509673 Length=441 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 61924 GGCGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAA 61983 ||||||| | ||||||||| ||| ||||||| |||| ||||||||||| || ||| Sbjct 430 GGCGAAGCGCAGCATACGGGTTGTATCCCATTCTATAAACTGTTCCAAACTGCTGTTAAA 371 Query 61984 TCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCAC 62043 | || || ||||| || | ||||| ||||| || || || ||| || | ||||| Sbjct 370 TGCTGCTCACAAGGCGGCGTCCGTGGCGGTGCAGCGACGTTGTTTTACCCATTATGGCAT 311 Query 62044 TTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATT 62103 |||||||| ||| |||| || |||||||||||| |||||||| || |||||| | Sbjct 310 TTAGAAGTTGAGTCATTATTGGTACTGAAAAATAACCGCGGCGTGGAAGACAACCGTGTC 251 Query 62104 CGACATATGGACTACGGAATTCAGATTAAT 62133 || |||||||| ||||| | ||| | ||| Sbjct 250 CGTCATATGGATTACGGCGTACAGTTAAAT 221 >seq351952 Length=416 Score = 113 bits (124), Expect = 5e-20 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 142541 GGTGGTCAACACCTGAACGTTAATGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 142600 |||||||||||| | ||||||||||| || ||||||| | |||||| | | Sbjct 200 GGTGGTCAACACTTAAACGTTAATGTAATGAACCGTGAAATGTTATTGGATGCAATGGAA 141 Query 142601 CATCCAGAAAAATATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 142660 ||||||| || ||||| || || || || |||||||| ||||| ||||| || |||||| Sbjct 140 AATCCAGATAAGTATCCACAATTAACAATTCGTGTATCGGGTTACGCAGTACGATTTAAC 81 Query 142661 TCTCTGACTCCGGAACAGCAGCGTGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAA 142720 || | ||| | ||||| ||| || || ||| | ||||||||||| | || |||||| Sbjct 80 TCGTTAACTGCAGAACAAAAGCAAGATGTAATCACACGTACCTTTACAGCGACGCTATAA 21 >seq128994 Length=861 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 63669 AAGTATCAATCATTATTGGATTCTATCCAAGGCAGGGCACCATCTGCGGTACTTATGGCA 63728 ||||| ||| | || || || || || |||||| | |||| || || | || || | Sbjct 820 AAGTACCAAACCTTGTTAGACTCAATTCAAGGCCGCTCACCGAATGTGGCATTTTTGCCT 761 Query 63729 TTACTTTCCGACCCTTCATTAGATACATGGGTTGCTACATGGACATTCAGTGAAACCATT 63788 || | || ||| ||| || || ||| ||| |||||| | || |||||||||| Sbjct 760 TTGGTATCGCTACCTGAATTGGAAACGTGGATTGAAACATGGTCGTTTTCTGAAACCATT 701 Query 63789 CACTCTCGTTCATATACTCATATCATGCGAAATCTTTATACTGATCCATCGAAGGTATTT 63848 ||||| ||||| || ||||| || || || ||| || || | | ||||| ||||||| Sbjct 700 CACTCGCGTTCGTACACTCACATTATTCGTAATATTGTTAATAACCCATCTTTGGTATTT 641 Query 63849 GATGAGATTGTATTAGATGAAGCAATTATGAAACGTGC 63886 || || |||||| | |||| | |||| | || ||||| Sbjct 640 GACGATATTGTACAAAATGATGAAATTTTAAAGCGTGC 603 >seq505215 Length=421 Score = 84.2 bits (92), Expect = 2e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 160147 AAATTTTAACTAAAATGAATGCTCATCT-TAAACAGTGGACTGAAAGAACTGGATTTGCT 160205 ||||| | | | |||||| ||| ||| | | || ||| ||||| |||||||| || Sbjct 229 AAATTATCAATCGAATGAAAGCTT-TCTGTGACCAATGGTCTGAAGAGACTGGATTCGCA 287 Query 160206 TTTAGTTTATATTCTACTCCTGCTGAAAACCTTTGTTATCGCTTCTGTAAACTTGATACA 160265 |||||||||||| |||| || ||||||| | ||| |||| || ||| | || || Sbjct 288 TTTAGTTTATATGCTACACCAAGTGAAAACTTATGTGATCGTTTTTGTCGTTTAGACACT 347 Query 160266 GAAAAATATGGAAGTGTAAAAGATGTTACCGATAAAGGCTGGTACACTAACAGTTTCCAT 160325 || | | |||| || || |||| || || ||||| | ||||| |||||||||||| Sbjct 348 AAAGAGTTTGGATTAGTTGAAAATGTAACTGACAAAGGTTATTACACAAACAGTTTCCAT 407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539094593813520