Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_031090.1
Length=169621
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 201 1e-46
seq506238 140 3e-28
seq509673 136 4e-27
seq351952 113 5e-20
seq128994 96.9 4e-15
seq505215 84.2 2e-11
>seq449735
Length=3187
Score = 201 bits (222), Expect = 1e-46
Identities = 487/734 (66%), Gaps = 5/734 (1%)
Strand=Plus/Plus
Query 61724 AAGTTTCATTGCCTACTCCAATTATGGCAGGTGCTCGTACTCCGACTCGCCAGTTCT-CT 61782
|| ||||| | ||||| |||||||||||||||| |||||| || || |||||||| ||
Sbjct 26 AAATTTCACTACCTACGCCAATTATGGCAGGTGTTCGTACGCCAACACGCCAGTTTAGCT 85
Query 61783 AGTTGTGTAGTTATTGAAGCCGGTGATTCGTTAAAATCTATTAACAAAACTTCAGCATCA 61842
|| ||||| | || || || || | | || |||||| || || | ||
Sbjct 86 CGT-GTGTATTAATAGAGTGTGGCGACAGCCTTGATTCAATTAACGCCACCTCGTCTGCA 144
Query 61843 ATTATTGAATATATTTCTAAACGAGCTGGTATAGGTATCAACGTTGGTATGCTTCGTGCA 61902
||| || |||| | || |||| || || || || || |||| ||| ||||||||
Sbjct 145 ATTGTTAAATACGTATCGCAACGTGCCGGCATTGGCATTAACGCAGGTCGCATTCGTGCA 204
Query 61903 GAAGGTTCTAAGATCGGTATGGGCGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAA 61962
||| | || | | ||||||| ||||||||| |||||| || | ||
Sbjct 205 CTGGGTAGCCACATTCGCAATGGCGAAGCGTACCATACGGGTTGTATTCCTTTTTATAAG 264
Query 61963 CATTTCCAAACTGCAGTAAAATCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACA 62022
|| || ||||| || || ||| ||||| ||||| ||| | ||||| || || || ||
Sbjct 265 CACTTTCAAACAGCGGTTAAAAGCTGTTCGCAAGGCGGTGTACGTGGCGGCGCAGCAACC 324
Query 62023 GCGTATTATCCGATGTGGCACTTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAA 62082
|| || ||| | ||||| ||||||||||| ||||| ||||| || |||||||||
Sbjct 325 TTGTTCTACCCGCTTTGGCATTTAGAAGTAGAAAACCTGTTAGTACTTAAAAATAACCGC 384
Query 62083 GGCGTGGATGAAAACCGTATTCGACATATGGACTACGGAATTCAGATTAATGACCTTATG 62142
|| || ||||| ||||| | || ||| | || ||||| | ||| ||||| | || |||
Sbjct 385 GGGGTTGATGACAACCGCGTGCGTCATTTAGATTACGGCGTACAGTTTAATAAACTAATG 444
Query 62143 ATGGAACGCCTTGGTAAAAATGATTATATTACTTTATTTAGCCCTCACGAAATGTCAGGC 62202
|| | |||| | || || ||||| || |||||||| || || |||||
Sbjct 445 TACTCGCGTTTAATTAAAGACGACTACATTACCTTGTTTAGCCCCTCTGATGTGCCAGGC 504
Query 62203 GAACTATACTACTCGTTCTTTGAAGATCAAGATAAATTCCGTGAGCTTTATGAGAAAGCT 62262
|| ||| | | || |||||||| ||||| | || | |||||||| |||
Sbjct 505 ---CTTTACGATGCATTTTTTGAAGACCAAGACGAGTTTGACGCGCTTTATGTAAAATAC 561
Query 62263 GAAAAAGACCCAACAATCAGAAAGAAAAGAATCAAAGCACTAGAACTCTTTGAATTGTTC 62322
||| ||||| | |||| | || ||| | || ||||| | ||||| || | ||||
Sbjct 562 GAACAAGACGAATCAATTCGTAAAAAACGCATTAAAGCTATTGAACTGTTCTCAATGTTT 621
Query 62323 ATGACTGAACGTTCTGGCACTGCTCGAATTTATCCACAGTTTGTTGATAACACGAATAAC 62382
| |||||| | | || | ||| ||||| ||| ||||| || ||||
Sbjct 622 GCGCAAGAACGTGCAAGTACCGGTCGTATTTACTTACAAAACGTTGACCACTGTAATACG 681
Query 62383 TACACTCCGTTTATTCGTGAAAAAGCTCCAATTCGTCAGAGTAACTTATGTTGTGAAATC 62442
||| ||||| ||| | || || || ||||| || ||| ||||||| |||||
Sbjct 682 CACAGCCCGTTCATTGCTAAAGTGGCACCTATTCGCCAATCTAATTTATGTTTAGAAATT 741
Query 62443 GCTATTCCAACTAA 62456
|| | ||||||||
Sbjct 742 GCATTACCAACTAA 755
>seq506238
Length=275
Score = 140 bits (154), Expect = 3e-28
Identities = 133/170 (78%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 142541 GGTGGTCAACACCTGAACGTTAATGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 142600
||||||||||| | ||||| ||||| | ||||||||||| |||||||||| |||||
Sbjct 218 GGTGGTCAACATTTAAACGTGAATGTGTTACGTCGTGAAACATTGGAAGATGCTGTTAAA 159
Query 142601 CATCCAGAAAAATATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 142660
|| || ||||||||||| || || || || |||||||| ||||| ||||| || ||||||
Sbjct 158 CACCCTGAAAAATATCCACAATTAACTATTCGTGTATCAGGTTACGCAGTGCGTTTTAAC 99
Query 142661 TCTCTGACTCCGGAACAGCAGCGTGACGTTATCGCTCGTACCTTTACTGA 142710
|| | || || ||||| |||| ||||| | | ||||| ||||| ||
Sbjct 98 TCATTAACACCAGAACAACAGCAAGACGTATTAACACGTACATTTACAGA 49
>seq509673
Length=441
Score = 136 bits (150), Expect = 4e-27
Identities = 156/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 61924 GGCGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAA 61983
||||||| | ||||||||| ||| ||||||| |||| ||||||||||| || |||
Sbjct 430 GGCGAAGCGCAGCATACGGGTTGTATCCCATTCTATAAACTGTTCCAAACTGCTGTTAAA 371
Query 61984 TCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCAC 62043
| || || ||||| || | ||||| ||||| || || || ||| || | |||||
Sbjct 370 TGCTGCTCACAAGGCGGCGTCCGTGGCGGTGCAGCGACGTTGTTTTACCCATTATGGCAT 311
Query 62044 TTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATT 62103
|||||||| ||| |||| || |||||||||||| |||||||| || |||||| |
Sbjct 310 TTAGAAGTTGAGTCATTATTGGTACTGAAAAATAACCGCGGCGTGGAAGACAACCGTGTC 251
Query 62104 CGACATATGGACTACGGAATTCAGATTAAT 62133
|| |||||||| ||||| | ||| | |||
Sbjct 250 CGTCATATGGATTACGGCGTACAGTTAAAT 221
>seq351952
Length=416
Score = 113 bits (124), Expect = 5e-20
Identities = 133/180 (74%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 142541 GGTGGTCAACACCTGAACGTTAATGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 142600
|||||||||||| | ||||||||||| || ||||||| | |||||| | |
Sbjct 200 GGTGGTCAACACTTAAACGTTAATGTAATGAACCGTGAAATGTTATTGGATGCAATGGAA 141
Query 142601 CATCCAGAAAAATATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 142660
||||||| || ||||| || || || || |||||||| ||||| ||||| || ||||||
Sbjct 140 AATCCAGATAAGTATCCACAATTAACAATTCGTGTATCGGGTTACGCAGTACGATTTAAC 81
Query 142661 TCTCTGACTCCGGAACAGCAGCGTGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAA 142720
|| | ||| | ||||| ||| || || ||| | ||||||||||| | || ||||||
Sbjct 80 TCGTTAACTGCAGAACAAAAGCAAGATGTAATCACACGTACCTTTACAGCGACGCTATAA 21
>seq128994
Length=861
Score = 96.9 bits (106), Expect = 4e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 63669 AAGTATCAATCATTATTGGATTCTATCCAAGGCAGGGCACCATCTGCGGTACTTATGGCA 63728
||||| ||| | || || || || || |||||| | |||| || || | || || |
Sbjct 820 AAGTACCAAACCTTGTTAGACTCAATTCAAGGCCGCTCACCGAATGTGGCATTTTTGCCT 761
Query 63729 TTACTTTCCGACCCTTCATTAGATACATGGGTTGCTACATGGACATTCAGTGAAACCATT 63788
|| | || ||| ||| || || ||| ||| |||||| | || ||||||||||
Sbjct 760 TTGGTATCGCTACCTGAATTGGAAACGTGGATTGAAACATGGTCGTTTTCTGAAACCATT 701
Query 63789 CACTCTCGTTCATATACTCATATCATGCGAAATCTTTATACTGATCCATCGAAGGTATTT 63848
||||| ||||| || ||||| || || || ||| || || | | ||||| |||||||
Sbjct 700 CACTCGCGTTCGTACACTCACATTATTCGTAATATTGTTAATAACCCATCTTTGGTATTT 641
Query 63849 GATGAGATTGTATTAGATGAAGCAATTATGAAACGTGC 63886
|| || |||||| | |||| | |||| | || |||||
Sbjct 640 GACGATATTGTACAAAATGATGAAATTTTAAAGCGTGC 603
>seq505215
Length=421
Score = 84.2 bits (92), Expect = 2e-11
Identities = 128/180 (71%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 160147 AAATTTTAACTAAAATGAATGCTCATCT-TAAACAGTGGACTGAAAGAACTGGATTTGCT 160205
||||| | | | |||||| ||| ||| | | || ||| ||||| |||||||| ||
Sbjct 229 AAATTATCAATCGAATGAAAGCTT-TCTGTGACCAATGGTCTGAAGAGACTGGATTCGCA 287
Query 160206 TTTAGTTTATATTCTACTCCTGCTGAAAACCTTTGTTATCGCTTCTGTAAACTTGATACA 160265
|||||||||||| |||| || ||||||| | ||| |||| || ||| | || ||
Sbjct 288 TTTAGTTTATATGCTACACCAAGTGAAAACTTATGTGATCGTTTTTGTCGTTTAGACACT 347
Query 160266 GAAAAATATGGAAGTGTAAAAGATGTTACCGATAAAGGCTGGTACACTAACAGTTTCCAT 160325
|| | | |||| || || |||| || || ||||| | ||||| ||||||||||||
Sbjct 348 AAAGAGTTTGGATTAGTTGAAAATGTAACTGACAAAGGTTATTACACAAACAGTTTCCAT 407
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 539094593813520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |