Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_031103.1 Length=165772 Score E Sequences producing significant alignments: (Bits) Value seq449735 197 1e-45 seq506238 134 1e-26 seq509673 114 1e-20 seq487923 102 9e-17 seq351952 102 9e-17 seq511551 98.7 1e-15 seq326422 89.7 5e-13 >seq449735 Length=3187 Score = 197 bits (218), Expect = 1e-45 Identities = 407/595 (68%), Gaps = 19/595 (3%) Strand=Plus/Minus Query 138230 AACAGTTCACGGGCTTTAATACGCTTTTTACGAAT--ATTAGGGTCTTTTTCTGCGGCTT 138287 ||||||||| |||||||| || ||||||||||| ||| | |||| ||| || Sbjct 611 AACAGTTCAATAGCTTTAATGCGTTTTTTACGAATTGATTCG--TCTTGTTCGTAT--TT 556 Query 138288 CATATAATTCACGG-AAACG-GTCTTGGTCTTTAAAATAAGAATAATAAAGCTCACCACC 138345 | |||| | || |||| ||||||||||| |||| | | || ||||| || Sbjct 555 TACATAAAGCGCGTCAAACTCGTCTTGGTCTTCAAAAAATGCATCGTAAAGG---CCTGG 499 Query 138346 CATTTCATGTGGACTGAACAAAGTAATGTAGTCGTTCTTTCCAAAACGTTCCATCATTAG 138405 || ||| || || ||||| ||||||||||||| || ||||| |||||| Sbjct 498 CACATCAGAGGGGCTAAACAAGGTAATGTAGTCGTCTTTAATTAAACGCGAGTACATTAG 439 Query 138406 GTCATTCAGTTGAACGCCATAATCCATATGACGAATACGGTTTTCTTCTACGCCTTTGTT 138465 | ||| | || ||||| ||||| | |||||| | ||||| || || || || ||| Sbjct 438 TTTATTAAACTGTACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTT 379 Query 138466 ATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATA--ATAAGCAGTA 138523 |||||| | || | || ||||| ||||| |||||||||| || || | ||| || Sbjct 378 ATTTTTAAGTACTAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAG--GTT 321 Query 138524 GCAGCGCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTC 138583 || ||||||||||| | || || || || || |||||| || || ||||| || || Sbjct 320 GCTGCGCCGCCACGTACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTA 261 Query 138584 CAAAAAGGAATAACACCAGTATG--ACGTACTTCACCTGTACCAATCTTAGAACCTTCGG 138641 ||||||||||| ||| ||||| ||| |||| || | | ||| | ||| | Sbjct 260 TAAAAAGGAATACAACCCGTATGGTACG--CTTCGCCATTGCGAATGTGGCTACCCAGTG 203 Query 138642 CACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTG 138701 ||||||| ||| ||||||| ||||| || || |||| || | |||| |||||||| Sbjct 202 CACGAATGCGACCTGCGTTAATGCCAATGCCGGCACGTTGCGATACGTATTTAACAATTG 143 Query 138702 AAGCAGAAGCTTTGTTAATAGACTTCAGCGAATCACCTGCTTCAATAACAACGCATGAAC 138761 || || | |||||| || | || || || || || | || || || | Sbjct 142 CAGACGAGGTGGCGTTAATTGAATCAAGGCTGTCGCCACACTCTATTAATACACACGAGC 83 Query 138762 TAAACTGCCGAGTTGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAAT 138816 ||||||| || ||||| |||||| ||| |||||||| || || |||| |||||| Sbjct 82 TAAACTGGCGTGTTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAGTGAAAT 28 >seq506238 Length=275 Score = 134 bits (148), Expect = 1e-26 Identities = 140/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 60306 ATTACAGACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 60365 |||||| | || ||||| ||||| | | ||||| |||| ||||| || || | | Sbjct 38 ATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATG 97 Query 60366 AGTTAAAGCGAACTGCATAACCGGATACGCGGATGGTCAGCTGCGGATATTTTTCCGGAT 60425 ||||||| || ||||| ||||| ||||| || || || | || ||||||||||| || | Sbjct 98 AGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGT 157 Query 60426 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 60485 | ||||| |||||||||| ||||||||||| | || || ||||| | |||||||||| Sbjct 158 GTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCAC 217 Query 60486 CTTC 60489 |||| Sbjct 218 CTTC 221 >seq509673 Length=441 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 138416 TGAACGCCATAATCCATATGACGAATACGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 138475 || ||||| |||||||||||||| | |||||| ||||| ||||| ||||||||||| Sbjct 228 TGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATTTTTCAGT 287 Query 138476 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 138535 || | | |||||||| |||||||| | || ||| | || || || |||||| Sbjct 288 ACCAATAATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGCACCGCCA 347 Query 138536 CGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAATA 138595 || | || || |||||||| ||||||||||||| || || |||| | || || ||| Sbjct 348 CGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAATGGGATA 407 Query 138596 ACACCAGTATG 138606 ||| ||||| Sbjct 408 CAACCCGTATG 418 >seq487923 Length=1072 Score = 102 bits (112), Expect = 9e-17 Identities = 149/202 (74%), Gaps = 9/202 (4%) Strand=Plus/Minus Query 23675 ATACTAATTTATCTAATACGTATTTTTGCCATGCATAATCATTACGGAATCCGAAGACCA 23734 ||| |||||||| |||| || || |||||||| ||||||||| |||||||| || Sbjct 528 ATAGTAATTTAT---ATACATACTTATGCCATGCTAAATCATTACCAAATCCGAATACTG 472 Query 23735 CATCATTTGAGCGCATGCTT-ACTAC-TGCATTGACTTTCTTATCACGAATCAGATACT- 23791 | ||| ||||||| || || || | | ||| | ||| ||||||||||| | ||||| Sbjct 471 CGTCACATGAGCGC-TGATTGACAATATAGATTAA-TTTATTATCACGAATAA-ATACTT 415 Query 23792 GTACTGTATTCGTACACATGAAATCTGACATACCATCTTTATTGTAGTCAAATTGCATTG 23851 | || |||| ||||| || ||||||||||| ||| |||| | ||| ||| || | Sbjct 414 GAACATTATTAGTACAAATAAAATCTGACATTTCATTAGTATTCCATTCACTTTGAATAG 355 Query 23852 ATGGACGAGTATAAATCATGAT 23873 | || | |||||||||||| || Sbjct 354 AAGGTCTAGTATAAATCATAAT 333 >seq351952 Length=416 Score = 102 bits (112), Expect = 9e-17 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 60307 TTACAGACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 60366 ||| || || | ||||||||||| | ||| || || ||| ||||| | ||| | || Sbjct 21 TTATAGCGTCGCTGTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGA 80 Query 60367 GTTAAAGCGAACTGCATAACCGGATACGCGGATGGTCAGCTGCGGATATTTTTCCGGATG 60426 |||||| || ||||| ||||| ||||| || || || | || ||||| || || |||| Sbjct 81 GTTAAATCGTACTGCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATT 140 Query 60427 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 60486 | | |||||| | ||||||| || || |||||||| | |||||||||||| Sbjct 141 TTCCATTGCATCCAATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACC 200 Query 60487 TTCAAT 60492 |||||| Sbjct 201 TTCAAT 206 >seq511551 Length=634 Score = 98.7 bits (108), Expect = 1e-15 Identities = 193/278 (69%), Gaps = 18/278 (6%) Strand=Plus/Minus Query 41696 CGAGGAAGATTCAGTGTTACAACACCAAGATTATTACGTCCATCAAGAATTTCATTACCA 41755 ||||| || || | |||| ||||| | || ||||||||||||| | ||| |||||| Sbjct 492 CGAGGTAGGTTTAAGCTTACCACACCTAAGTTGTTACGTCCATCAAACACTTCCTTACCA 433 Query 41756 GTCGAATCTTTCCATACGCTCAA--GAAACTACGGCAACCCAT---TGGAGAAACAGGAA 41810 | || ||||| |||| ||| | ||| || | ||| ||||| || || | | Sbjct 432 GAAGAGTCTTT--ATACTCTCCAAGGAAGCTCCTGCAGCCCATGCTTGCCTTAAAACCAC 375 Query 41811 CAGATGAACCAGTGATAGCTTTATTGTTCTTAGCTGAAATAATATCAGGATACATCCTTT 41870 ||| |||| | | ||| || ||| ||| |||||||||| ||||| | | Sbjct 374 CAGT--AACCTCTACAATCTTA-----TCGTAGTTGA--TAATATCAGGGTACATACGCT 324 Query 41871 TGCTTGCACACTCTAGAGCAAGCTGTTTAATATCATAGTTCGGATCGTCTT-TATAAAGA 41929 | || |||||||||||||| | ||||||||||| |||||| || || || | | ||||| Sbjct 323 TACTGGCACACTCTAGAGCTAACTGTTTAATATTATAGTTTGGGTCTTCCTGTTTAAAG- 265 Query 41930 TTAACACCTTCTTCAACGAACATAACAAGCTTAGGGAA 41967 || ||||| |||| || | | |||||||||||| Sbjct 264 TTGACACCGTCTTTAATAGTTAGGATAAGCTTAGGGAA 227 >seq326422 Length=2068 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/115 (79%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 70364 GCGCTCTACCAAACTGAGCTACAC--GGAGTAAATTAAATTGGAGCGGATAATGAGAATC 70421 |||||||||||| |||||||| | | | | |||| |||||||| | | ||||| Sbjct 291 GCGCTCTACCAA-CTGAGCTATATCAGCATCACCATAAACTGGAGCGGGCAGCGGGAATC 349 Query 70422 GAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGC 70475 |||| | ||||||||| ||||||| ||||||||||| |||||||||||| |||| Sbjct 350 GAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526858700101440