Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_031104.1 Length=72979 Score E Sequences producing significant alignments: (Bits) Value seq486019 318 3e-82 seq488807 205 4e-48 seq255804 190 9e-44 seq523594 109 3e-19 seq505100 91.5 7e-14 >seq486019 Length=823 Score = 318 bits (352), Expect = 3e-82 Identities = 472/665 (71%), Gaps = 3/665 (0%) Strand=Plus/Plus Query 68200 TCACCATCCTGGATGAGACGGTCTTCGTCGGACATGATCTGGAGCATAAGCTCTTGGTTG 68259 |||| ||| || || ||||| || ||||| |||||||| | | ||||||||||||||| Sbjct 159 TCACAATCTTGAATTAGACGATCCTCGTCTGACATGATTCGTAACATAAGCTCTTGGTTA 218 Query 68260 AACGTCTCGATCTTCCCTGCCTTCTTGGCCAGGGTGTACTTCTGCAACACGAAGTCGTAG 68319 || || || | ||| |||||||| || ||||| || | || || || | || Sbjct 219 AATGTATCCACCTTACCTGCCTTAAAAGCTTTAGTGTATTTGTCTAAAACAAATTGATAT 278 Query 68320 GTGAATCGGTCAGCCCATGCACCCCTGAACTCTTCCCGCGAACACGGGAATCTCTCGCAC 68379 | ||| || |||| ||| ||||| || || |||| | ||| || || | | ||| Sbjct 279 GAGAAACGATCAGGCCACGCACCTCTAAAGTCTTTCTCTTCACAAGGAAAATTAGCACAC 338 Query 68380 ACAGGGTAGACGTTGACCTTCCAGGCACCAGACTCCACTGCTTTGTACAGAGGATCCTTC 68439 |||||||| ||||| || ||| ||||||||||| ||||||||||| | ||||| | Sbjct 339 ACAGGGTACACGTTAACTGCCCAAGCACCAGACTCAACTGCTTTGTATAATGGATCACGC 398 Query 68440 GCGTTGAACGGTGTACCCGACCAGATGATCAT-GTTCTTCTTCGGGTGCAGTGCATAGTC 68498 | ||| || || ||||| |||||||| | | | | | | || |||| | ||| ||||| Sbjct 399 GAGTTAAAGGGAGTACCTGACCAGATTACCTTAGAGCGTATT-GGGTCTAATGCGTAGTC 457 Query 68499 CACTGCCTTGTACACCGTGTCTTCGATGGCTGCGATGACGGTTGGCGAGCGAGCATCTTC 68558 | ||||||||||| || ||||| | || | || || || | || | |||||||| Sbjct 458 AATAGCCTTGTACACTGTATCTTCTACAGCAGAAATAACTGTAGCTGACCTCGCATCTTC 517 Query 68559 GTCCGAAACCAAGTCATCCAGTACCGCAAGCTGCGGTCGCTTACCCATCTCCTTCGCACC 68618 ||||| | |||||||| ||||| |||||| || || ||||||||| || ||||| Sbjct 518 ATCCGATATTAAGTCATCTAGTACAGCAAGCACTGGACGAACACCCATCTCTTTAGCACC 577 Query 68619 ACGGACACCAGTCTTGGCACCGTAGCCCTTGACGATGAAGACCTTCCCGTCCAGGTTCGT 68678 ||| ||||| ||||| || || || || || ||||| || || || || | ||| | Sbjct 578 ACGTACACCGGTCTTTGCGCCATAACCTTTTACGATAAATCGGTTACCATCAATGTTATT 637 Query 68679 GAACTTCCAGCGGATGTCAGTGAAGTTGGTTTGGGGGATGTACTTCTTCAGGAACTCGGA 68738 || | |||||| || |||||||| | || | || | ||||| | || || || Sbjct 638 AAATTCCCAGCGTATATCAGTGAACCTAGTGT-AGGTACATACTTAAGTAAAAATTCTGA 696 Query 68739 GTTCTCCCACCGGAACTCCAGGTTCTTCCGCATGTTCTTCACACCGTTGTCGATGGAGTC 68798 ||| ||||| |||||||||| |||||| ||||||||||| |||||||| || || || Sbjct 697 GTTTTCCCAACGGAACTCCAAGTTCTTACGCATGTTCTTAACACCGTTCTCTATACTATC 756 Query 68799 CGATACGTACAGAGCAAGGTCTACCTTACCGAAACCAGGAAGCTCACCGTACAGTGCAAT 68858 || || |||||||| | | || ||||| || || || | |||||||| || || Sbjct 757 TGAAACATACAGAGCCAAGGGAACTTTACCAAACCCGGGGATGTCACCGTAACAAGCTAT 816 Query 68859 GTACA 68863 ||||| Sbjct 817 GTACA 821 >seq488807 Length=774 Score = 205 bits (226), Expect = 4e-48 Identities = 352/503 (70%), Gaps = 10/503 (2%) Strand=Plus/Minus Query 68019 CATGTCCTGGCGTTCACAGATACCATCTACCCACAGCCAGTCCT-CGTTGTGAGAGTAG- 68076 |||||| || | || || ||||| |||||||| | ||| | | | | |||| || Sbjct 498 CATGTCTTGTTGCTCGCAAATACCGTCTACCCAGAACCA--CGTACCATCTGAGCTAAGC 441 Query 68077 GCCCAGACACTGATGATGCTGAAGTCACTGGCCTTCTTCGCAGAGGTAGCGAAGTCAGTA 68136 ||||| ||| || | ||| ||||| || |||| || ||||||| || || || ||| Sbjct 440 GCCCATACAGATATTACGCTAAAGTCGCTAGCCTCTTTTTCAGAGGTTGCAAAATCCGTA 381 Query 68137 GTGACGTAGAAGTTGTACCGCTTCTTGT-TGTCCAGCACGTTGCG--ACGCATGTACCAA 68193 |||| ||||||||||||| || |||| | | || | ||| ||| ||||||| Sbjct 380 GTGATGTAGAAGTTGTAC-GCGTCTTTACTCTTAAGAAG--TGCATTACGTGCGTACCAA 324 Query 68194 GCCACCTCACCATCCTGGATGAGACGGTCTTCGTCGGACATGATCTGGAGCATAAGCTCT 68253 | ||||| ||| | || | | |||||| || ||||| || ||||| | |||| Sbjct 323 TTAATCTCACTATCTTTAATTAATCTGTCTTCTTCTGACATAATTCTTAGCATCAACTCT 264 Query 68254 TGGTTGAACGTCTCGATCTTCCCTGCCTTCTTGGCCAGGGTGTACTTCTGCAACACGAAG 68313 ||||| || | || | ||| ||||| || || |||||| | || || || || Sbjct 263 TGGTTAAAAGAATCCACCTTACCTGCTTTAACAGCTTTGGTGTATTGCTTCATTACATAG 204 Query 68314 TCGTAGGTGAATCGGTCAGCCCATGCACCCCTGAACTCTTCCCGCGAACACGGGAATCTC 68373 || || ||||| || |||| ||||| || |||||||||| | || ||| || ||| || Sbjct 203 TCATACGTGAAGCGATCAGGCCATGAGCCTTTGAACTCTTCTCTCGTACAAGGAAATTTC 144 Query 68374 TCGCACACAGGGTAGACGTTGACCTTCCAGGCACCAGACTCCACTGCTTTGTACAGAGGA 68433 || ||||||||||| || || || | ||| || || ||||| ||||||||||||| || Sbjct 143 TCACACACAGGGTACACATTTACGTACCAAGCTCCTGACTCAACTGCTTTGTACAATGGG 84 Query 68434 TCCTTCGCGTTGAACGGTGTACCCGACCAGATGATCATGTTCTTCTTCGGGTGCAGTGCA 68493 || ||||| ||||| ||||| |||||||| || | ||| | || |||| ||| Sbjct 83 TCACGGGCGTTAAACGGAGTACCTGACCAGATTATTTTAGACTTGGTAGGATGCAATGCG 24 Query 68494 TAGTCCACTGCCTTGTACACCGT 68516 || |||||||| || || || || Sbjct 23 TAATCCACTGCTTTATAAACTGT 1 >seq255804 Length=3791 Score = 190 bits (210), Expect = 9e-44 Identities = 477/719 (66%), Gaps = 13/719 (2%) Strand=Plus/Plus Query 68333 CCCATGCACCCCTGAACTCTTCCCGCGAACACGGGAATCTCTCGCACACAGGGTAGACGT 68392 ||||||| || | |||||||| | | ||| || || |||| || | ||| || || Sbjct 2268 CCCATGCTCCTTTAAACTCTTCTCTAGTACAAGGAAACTTCTCACATATAGGATATACAC 2327 Query 68393 TGACCTTCCAGGCACCAGACTCCACTGCTTTGTACAGAGGATCCTTCGCGTTGAACGGTG 68452 | || | ||| |||||||| |||| |||| |||| |||||| || || || || || | Sbjct 2328 TTACATCCCATGCACCAGATTCCATAGCTTCATACAAAGGATCATTAGCATTAAAGGGAG 2387 Query 68453 TACCCGACCAGATGATCATGTTCTTCTTCGGGTGCAGTGCATAGTCCACTGCCTTGTACA 68512 |||| ||| || || | |||||| ||||| |||||||| | | |||| | Sbjct 2388 TACCAAGCCATATAGTCTTAGACTTCTTAGGGTGAAGTGCATACTTAATAGCCTGACCTA 2447 Query 68513 CCGTGTCTTCGATGGCTGCGATGACGGTTGGCGAGCGAGCATCTTCGTCCGAAACCAAGT 68572 | ||||||| || ||| || || || || || || | || || | ||| |||| Sbjct 2448 CTGTGTCTTTAATAGCTTGAATAACTGTAGGTGAACGTGAGTCATCATTACTAACTAAGT 2507 Query 68573 CATCCAGTACCGCAAGCTGCGGTCGCTTACCCATCTCCTTCGCACCACGGACACCAGTCT 68632 |||| || | || | ||| || || |||||||||||||| ||||||| | ||| |||| Sbjct 2508 CATCTAGGATAGCCATCTGTGGGCGTGTACCCATCTCCTTCACACCACGAATACCTGTCT 2567 Query 68633 TGGCACCGTAGCCCTTGACGATGAAGACCTTCCCGTCCAGGTTCGTGAACTTCCAGCGGA 68692 ||||||| || ||||| || | ||| | || | | ||| | |||| ||| | | Sbjct 2568 TGGCACCATACCCCTTTACTACGAATTTAGTACCATTAATATTCTTAAACTCCCACCTAA 2627 Query 68693 TGTCAGTGAAGTT------GGTTTGGGGGATGTACTTCTTCAGGAACTCGGAGTTCTCCC 68746 | || |||| || || || | ||||||| | |||||| |||||| Sbjct 2628 TATCTGTGAGCTTTAATCCTTCTTTAGGTAGATACTTCTGTAAGAACTCACTACTCTCCC 2687 Query 68747 ACCGGAACTCCAGGTTCTTCCGCATGTTCTTCACACCGTTGTCGATGGAGTCCGATACGT 68806 | || |||| | |||||| | ||| ||| | |||||| || || || ||||| | Sbjct 2688 AACGAGACTCTAAGTTCTTTCTCATTGACTTAATACCGTTATCAATACTATCTGATACAT 2747 Query 68807 ACAGAGCAAGGTCTACCTTACCGAAACCAGGAAGCTCACCGTACAGTGC-AATGTACAGG 68865 |||| | | | |||||||| || || | ||||||| || || || | | Sbjct 2748 ACAGCACTAATTTAACCTTACCAAAGGACGGCATTCTGCCGTACACCGCTAAGATATAAG 2807 Query 68866 AACAGGTACTCACCCATCACGGTAGTCTTGGCTGCACCACGGAAGACCATGTTGGCGATC 68925 | ||||||||| |||| | |||||||| |||||||||| |||| |||||| || | Sbjct 2808 ATAAGGTACTCAGCCATTAGTGTAGTCTTACCTGCACCACGAAAGATCATGTTAGC--TA 2865 Query 68926 CGTGTCTGA--CCGGAACCAATCTGGTCAAGCATACGTAGGTGGAGCACTGGTGTCTTGT 68983 ||| ||| | || | | | || || | ||| || ||| | || |||| || Sbjct 2866 CGTTTCTTAATCCACCATCTAACTTATCTAACATCTTTAAGTGAATAACAGGTGATACGT 2925 Query 68984 TCTCTTCCCCTTCGTTACCGTTGACCATCTTGATGAA-GTCAACGAACTGCAAGGCAAA 69041 |||| || || || ||| || || | ||| || || ||||| ||||| ||| ||||| Sbjct 2926 TCTCCTCACCCTCACCACCATTAACTAGCTTAATAAACGTCAA-GAACTCCAATGCAAA 2983 >seq523594 Length=514 Score = 109 bits (120), Expect = 3e-19 Identities = 74/83 (89%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 34542 ATCCAGAAGCGGTCTACGTTGAAGCCAGCTTCGACAGTGCGACCGTCGTTGTACACACCG 34601 |||||||||||||| |||| ||| || ||||| ||||||||||| ||||||||||||||| Sbjct 512 ATCCAGAAGCGGTCCACGTCGAAACCGGCTTCTACAGTGCGACCATCGTTGTACACACCG 453 Query 34602 AAGCCACCAACCAAACCATTCAC 34624 || ||||||| ||||||||| || Sbjct 452 AAACCACCAATCAAACCATTGAC 430 >seq505100 Length=723 Score = 91.5 bits (100), Expect = 7e-14 Identities = 346/538 (64%), Gaps = 14/538 (3%) Strand=Plus/Plus Query 68109 CTTCTTCGCAGAGGTAGCGAAGTCAGTAGTGACGTAGAAGTTGTACCGCTTCTTGTTGTC 68168 || |||| || ||| || |||||||||| | || ||||| | | || || | Sbjct 2 CTCCTTCTCACTGGTTGCAAAGTCAGTAGCAATATAAAAGTTAAAGTTATCTTTCTTATT 61 Query 68169 CAGCACGTTGCGACGCATGTACCAAGCCACCTCACCATCCTGGATGAGACGGTCTTCGTC 68228 ||||| || | || | ||||| || |||| ||| || | || | ||||| || Sbjct 62 CAGCAAGTCTCTACTGTTATACCACTGCAAATCACTATCATGTACAAGTCTATCTTCTTC 121 Query 68229 GGACATGATCTGGAGCATAAGCTCTTGGTTGAACGTCTCGATCTTCCCTGCCTTCTTGGC 68288 ||| ||||| |||||||||||||||| ||| | ||| | | ||||| Sbjct 122 ACTCATAATCTGTAGCATAAGCTCTTGGTAGAAA----CCATCAGCGTTACCTTCAGCAA 177 Query 68289 CAGGGT----GTACTTC-TGCAACACGAAGTCGTAGGTGAATCGGTCAGCCCATGCACCC 68343 ||| | |||| || | | | || | ||||| || |||||| ||||||| || Sbjct 178 CAGACTCTTCGTACATCGTACTA-ACATACTCGTAACCAAAGCGGTCATCCCATGCGCCT 236 Query 68344 CTGAACTCT--TCCCGCGAACACGGGAATCTCTCGCACACAGGGTAGACGTTGACCTTCC 68401 | |||||| | || | ||| || || |||| || || || || || || | || Sbjct 237 TTAAACTCTGATTCCTC--ACAAGGAAACTTCTCACATACTGGATAAACACCTACATCCC 294 Query 68402 AGGCACCAGACTCCACTGCTTTGTACAGAGGATCCTTCGCGTTGAACGGTGTACCCGACC 68461 | ||||||||||| | |||| || | |||||| || || || || || ||||| || Sbjct 295 AAGCACCAGACTCAATAGCTTGATATAAAGGATCGTTAGCATTAAAGGGAGTACCAAGCC 354 Query 68462 AGATGATCATGTTCTTCTTCGGGTGCAGTGCATAGTCCACTGCCTTGTACACCGTGTCTT 68521 | || || | ||| | ||||| | ||||| | | |||| || || || | Sbjct 355 ATATTCTCTTAGACTTAGTTGGGTGTAACGCATACTTAATAGCCTGACCAACTGTATCCT 414 Query 68522 CGATGGCTGCGATGACGGTTGGCGAGCGAGCATCTTCGTCCGAAACCAAGTCATCCAGTA 68581 || | | || | || || || | | |||||||| |||||||||||||| || Sbjct 415 TAATAGATTGAATAGCAGTAGGTGATCTTGAATCTTCGTTACTAACCAAGTCATCCATTA 474 Query 68582 CCGCAAGCTGCGGTCGCTTACCCATCTCCTTCGCACCACGGACACCAGTCTTGGCACC 68639 ||| |||||| ||| |||| || || |||||| ||||||| ||| ||||| Sbjct 475 TACCAATCTGCGGACGCATACCATATTCTTTAAAACCACGAACACCAGACTTAGCACC 532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 231913125480680