Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_031274.1 Length=50509 Score E Sequences producing significant alignments: (Bits) Value seq521152 174 5e-39 seq520451 100 9e-17 seq498376 89.7 2e-13 seq511525 82.4 2e-11 seq385007 82.4 2e-11 >seq521152 Length=754 Score = 174 bits (192), Expect = 5e-39 Identities = 433/648 (67%), Gaps = 27/648 (4%) Strand=Plus/Minus Query 23272 GTACCGAAGCCATTCTTTGTAAGCATAGCCGTTTCGTGGTAGGCTGAGTAGAATCCATCA 23331 ||||| ||||||||||||||||||||||| || || || || | ||||| |||| Sbjct 709 GTACCAAAGCCATTCTTTGTAAGCATAGCAGTATCATGTCTAGCAGTATAGAAACCATGG 650 Query 23332 ATGCTGTCCTCAATATATTGACCAGAGCAGCTTACTGGCATACCTTTGATTGTACCCATG 23391 || || || ||||| || ||||| || || ||||||||||||||| ||||||||||| Sbjct 649 ATACTATCATCAATGTACGCGCCAGAACAACTAACTGGCATACCTTTGTTTGTACCCATG 590 Query 23392 TTACTAAGAACA--GGAGTAGAGGCAGCAAGCCAGCCGCGCCAAAGAACATCAAAAAACT 23449 || | | |||| |||||| ||| | ||| || ||| | |||||||| || Sbjct 589 TT--TGATAACACTGGAGTACTACAAGCTAACCAACCATTCCACATTACATCAAAGAAGC 532 Query 23450 TAGAGGCCCACTTGTCAGG--GTCGTCAGTGTGTCGTGCAGCAGTTTTAGCAATGCGCTC 23507 ||||| ||||| || || ||||| ||||| || ||||||||||| || || Sbjct 531 GCACTGCCCATGCTTCAGGATGTGGT--GTGTGACGTGCTGCGGTTTTAGCAATACGTTC 474 Query 23508 GTAGGTGTCTTTG-AGTCCTCTTGCTTCCCACAAATATTTCTCTTTAAAGAGTTGCCATC 23566 || || | | | || || || || || | ||||| || | |||||||| Sbjct 473 ATA-TTGACCGCGCATACCAACTGAATCATGTAAGTAGCTTTCTTTGAACAATTGCCATC 415 Query 23567 CACCAGTAGTCATCCATTCAGGTACTA-GACCTTGTGCTTGAAGTTCTTTCCTCTCTTGG 23625 |||||||||| | ||| | | | | || |||| ||| ||| |||||||| | ||| | Sbjct 414 CACCAGTAGTTACCCA-TGATGGATTATGACCGTGTTGTTGTAGTTCTTTGCGTTCTGCG 356 Query 23626 GAAAGTTTCTCGTAAATTGTACTCA-------------CCAACTAAATCCTTTCTCATCC 23672 ||| | | ||| || | ||| | ||| ||| | | | |||| Sbjct 355 CCAAGCTGTTTGTATATCGATGTCATTAGTTAGTTCTCCAAACGAAAACGTGATTGATCC 296 Query 23673 CAGGAACGATTGTAACTGTTACCAATGCCGCTAAAGAAGTCATGGAACATGACGCCATTG 23732 ||| || || ||||| ||| || || |||||||||| || || || ||| Sbjct 295 CAGTCGCGGTTATAACTTGAACCGATACCAGTAAAGAAGTCGTGTAATTGTACTGAGTTG 236 Query 23733 ATGCCATCATAGAACCACTCTGCAACAATATTGTTACTCACTTCAAAGACAGGATCAATA 23792 ||| ||||||||||| || |||| ||||| | |||||| | ||| ||| Sbjct 235 ATGTTGTCATAGAACCAATCAGCAATTGAGTTGTTGAATATTTCAAATATAGGTAACATA 176 Query 23793 CC-AAGCTGAGCAAGACAGATGTTGACACGAGACTTAACGAAGGTTTTCATTTGCTCAGC 23851 || || | | || ||| | || ||||||||||| || || ||||||||||| || Sbjct 175 CCTAAATTCTGTAA-ACACAAATTCACACGAGACTTTACAAACGTTTTCATTTGTTCTTT 117 Query 23852 AGTGATGCCTTCCATTTCACCCTTCTCAAAAATCATATCAACAATACG 23899 |||||| || ||| ||||| | || || |||||||||| |||||| Sbjct 116 AGTGATACCAGGCATATCACCGTGTTCGAAGATCATATCAATAATACG 69 >seq520451 Length=342 Score = 100 bits (110), Expect = 9e-17 Identities = 237/347 (68%), Gaps = 11/347 (3%) Strand=Plus/Minus Query 22767 TTTCCACTCATCATACTTCTCCAAATTCATGGACGACAGAACACAAGTGAATGTATGGTC 22826 |||||| ||||| ||||| | || ||||| || || ||||| || || |||||||| Sbjct 342 TTTCCATTCATCGTACTTAGCTAAGTTCATAGAACTCAATACACATGTAAACGTATGGTC 283 Query 22827 TGCGTCACTAAACAATGTAATCTCAGTGCAAAGGTTAGAGGCTTTAAC-TTCAAGACCTC 22885 ||||||||||| | || || | || | |||||| ||||| || |||||| || Sbjct 282 GATATCACTAAACAAGTTGATTTCGATACATAAGTTAGACGCTTTTACTTTCAAG-CCCA 224 Query 22886 TGTCCTTATACATCTGAGG-GTTCATGGCGTTAACTGTATCAGGCTTA--AAGAAATAGC 22942 |||| || ||||| || || | | | | ||| || | || | ||| ||| |||| | Sbjct 223 TGTCTTTGTACATTTGTGGTGATAAACG-GTTCACGTTGTC--GATTAGTAAGTAATAAC 167 Query 22943 CCTTACCAGTGATGGCCTTAACATACATTGCCCTTTGGAAGCGTTGTA-CAGCGTCTGTG 23001 | |||||||| | ||||| || | ||| | | |||||| || |||| || ||| | Sbjct 166 CTTTACCAGTTACTGCCTTTACTTTCATCGAACGTTGGAAACG-TGTATGTGCATCTATA 108 Query 23002 TCGCCAGCTTCTAGACGGTTGATGAAGTCTTGACTGATGTTCCAACCAATGTTTAGATCA 23061 || ||||| | | | |||||| | | | ||||| ||||||| | ||| | |||| Sbjct 107 TCACCAGCATTCAATCTTGCGATGAAAGCATCAGTGATGATCCAACCCAAGTTCAAATCA 48 Query 23062 TCAGGGAAGTTCTTC-AAGTAGTCTACGATTTCGTAGAAGTCTCCGT 23107 || ||| | | | | ||||| || || | || |||||| |||| Sbjct 47 TCTGGGTAATGTTCCAAAGTAATCCACTAACTCAGGGAAGTCACCGT 1 >seq498376 Length=1043 Score = 89.7 bits (98), Expect = 2e-13 Identities = 180/263 (68%), Gaps = 8/263 (3%) Strand=Plus/Minus Query 31711 CCCTTCTTAACGCAC-AAGATAACTTCATCGTGCATTTGACCAGTGAGTTGAGGT---CG 31766 |||||||||| || | |||||||||||||| || | || |||| ||||||||| || Sbjct 665 CCCTTCTTAA-GCTCTAAGATAACTTCATCATGGAACTGTGCAGTTAGTTGAGGTCTACG 607 Query 31767 TTTCTTTCTAAAATTGCCTATCCATACATCAAAACAATAAACTCCCGTACCTTGGTTGAG 31826 |||| || | | | || |||| |||||| |||||| || ||| ||||| | Sbjct 606 TTTCATT---ATGTAGAATACCCATCTATCAAAGCAATAAGTACCAGTAGACTGGTTTAA 550 Query 31827 CGTTGAGAACCTATCTTTTTCATGACGCAAGCTGTACCAGAATCCACTCACTGGATTGTA 31886 || |||||||||||||| ||| | ||| |||| | | || || || || | Sbjct 549 GGTAGAGAACCTATCTTTATCAGCTCTTAAGAACAACCACAGTTCAGCTACAGGGTTCCA 490 Query 31887 CAACCACTTCATTCCATTGCATACCTTAACTCTCTGGTCTTCAGCAATACGTTTGACTGA 31946 | ||||||||||||| | ||||||| | || ||||| ||| | | | || Sbjct 489 TAGCCACTTCATTCCACGTGAGTTCTTAACTATACACTCATCAGCTATAGCTGTAAGAGA 430 Query 31947 CCAGTTACGTTGCCAATACGCAT 31969 |||||| |||| ||| || |||| Sbjct 429 CCAGTTTCGTTTCCAGTAGGCAT 407 >seq511525 Length=313 Score = 82.4 bits (90), Expect = 2e-11 Identities = 126/175 (72%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 22089 TTCATCAGCGTCAAAGAACAAA-TTAAGTGACTGTGCTTGACAGATGTAAGGCTGTCGAG 22147 ||| ||||| |||||||| ||| || | |||||| ||||||| || | || || |||| Sbjct 278 TTCGTCAGCATCAAAGAAAAAAGTTCAATGACTGCCCTTGACAAATATCTGGTTGACGAG 219 Query 22148 CTGCTGCTAATCTAACCAGAGCTGCTTGATCCACCTCATAAGCCGTCTTGAATAC-AGCT 22206 | || ||||| | || | ||| ||||| | ||| | || ||||||||||| | | Sbjct 218 CAGCAGCTAAACGAATAATCGCTCGCTGATCGATTTCAAATGCTGTCTTGAATACTAATT 159 Query 22207 TTCTCTT--TCGGACTAAGCCAATCAAGATGTTGTACACTACCTTCAGTTTCAGT 22259 ||||| | || | | | ||| |||| |||||| ||| |||||| ||||||| Sbjct 158 TTCTCGTGATCTG--TCATCCATTCAATATGTTGAACAGAACCTTCGTTTTCAGT 106 >seq385007 Length=1275 Score = 82.4 bits (90), Expect = 2e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 22387 ATACCTTGGGAGACGCCCCCACAGATAAGAGCAGAAGATGTGTTGGGGGCAATAGAAAGT 22446 |||||||| || | ||| | || || ||||||||| ||| || || | | | Sbjct 897 ATACCTTGTGACTCTGAACCAAATATTAGTGCAGAAGATACGTTAGGTGCTAGTGCTGTT 956 Query 22447 AGATGAGTGTTCCTAACACCATAACCTTTACACCACTCAGGTTCACCCCAAGCTTTCGCC 22506 | ||||| || | |||||||||||||||||||| ||||| || ||||| | ||| Sbjct 957 CGGTGAGTATTACGTACACCATAACCTTTACACCAATCAGGCTCTCCCCATTGCTCAGCC 1016 Query 22507 ATCCACTTCGTAGCACGAGTAGCTTCCTCATGTAGATGTTGGAAGATTTCCAAGTTGACC 22566 || |||| | ||| | | ||| ||||||||||||| | | ||||| ||||| | Sbjct 1017 ATAAACTTAGAAGCTCTTAATGATTCATCATGTAGATGTTTAGATACTTCCATGTTGAAC 1076 Query 22567 ATGTGAGC 22574 ||||| || Sbjct 1077 ATGTGTGC 1084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160499340765204