Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_031274.1
Length=50509
Score E
Sequences producing significant alignments: (Bits) Value
seq521152 174 5e-39
seq520451 100 9e-17
seq498376 89.7 2e-13
seq511525 82.4 2e-11
seq385007 82.4 2e-11
>seq521152
Length=754
Score = 174 bits (192), Expect = 5e-39
Identities = 433/648 (67%), Gaps = 27/648 (4%)
Strand=Plus/Minus
Query 23272 GTACCGAAGCCATTCTTTGTAAGCATAGCCGTTTCGTGGTAGGCTGAGTAGAATCCATCA 23331
||||| ||||||||||||||||||||||| || || || || | ||||| ||||
Sbjct 709 GTACCAAAGCCATTCTTTGTAAGCATAGCAGTATCATGTCTAGCAGTATAGAAACCATGG 650
Query 23332 ATGCTGTCCTCAATATATTGACCAGAGCAGCTTACTGGCATACCTTTGATTGTACCCATG 23391
|| || || ||||| || ||||| || || ||||||||||||||| |||||||||||
Sbjct 649 ATACTATCATCAATGTACGCGCCAGAACAACTAACTGGCATACCTTTGTTTGTACCCATG 590
Query 23392 TTACTAAGAACA--GGAGTAGAGGCAGCAAGCCAGCCGCGCCAAAGAACATCAAAAAACT 23449
|| | | |||| |||||| ||| | ||| || ||| | |||||||| ||
Sbjct 589 TT--TGATAACACTGGAGTACTACAAGCTAACCAACCATTCCACATTACATCAAAGAAGC 532
Query 23450 TAGAGGCCCACTTGTCAGG--GTCGTCAGTGTGTCGTGCAGCAGTTTTAGCAATGCGCTC 23507
||||| ||||| || || ||||| ||||| || ||||||||||| || ||
Sbjct 531 GCACTGCCCATGCTTCAGGATGTGGT--GTGTGACGTGCTGCGGTTTTAGCAATACGTTC 474
Query 23508 GTAGGTGTCTTTG-AGTCCTCTTGCTTCCCACAAATATTTCTCTTTAAAGAGTTGCCATC 23566
|| || | | | || || || || || | ||||| || | ||||||||
Sbjct 473 ATA-TTGACCGCGCATACCAACTGAATCATGTAAGTAGCTTTCTTTGAACAATTGCCATC 415
Query 23567 CACCAGTAGTCATCCATTCAGGTACTA-GACCTTGTGCTTGAAGTTCTTTCCTCTCTTGG 23625
|||||||||| | ||| | | | | || |||| ||| ||| |||||||| | ||| |
Sbjct 414 CACCAGTAGTTACCCA-TGATGGATTATGACCGTGTTGTTGTAGTTCTTTGCGTTCTGCG 356
Query 23626 GAAAGTTTCTCGTAAATTGTACTCA-------------CCAACTAAATCCTTTCTCATCC 23672
||| | | ||| || | ||| | ||| ||| | | | ||||
Sbjct 355 CCAAGCTGTTTGTATATCGATGTCATTAGTTAGTTCTCCAAACGAAAACGTGATTGATCC 296
Query 23673 CAGGAACGATTGTAACTGTTACCAATGCCGCTAAAGAAGTCATGGAACATGACGCCATTG 23732
||| || || ||||| ||| || || |||||||||| || || || |||
Sbjct 295 CAGTCGCGGTTATAACTTGAACCGATACCAGTAAAGAAGTCGTGTAATTGTACTGAGTTG 236
Query 23733 ATGCCATCATAGAACCACTCTGCAACAATATTGTTACTCACTTCAAAGACAGGATCAATA 23792
||| ||||||||||| || |||| ||||| | |||||| | ||| |||
Sbjct 235 ATGTTGTCATAGAACCAATCAGCAATTGAGTTGTTGAATATTTCAAATATAGGTAACATA 176
Query 23793 CC-AAGCTGAGCAAGACAGATGTTGACACGAGACTTAACGAAGGTTTTCATTTGCTCAGC 23851
|| || | | || ||| | || ||||||||||| || || ||||||||||| ||
Sbjct 175 CCTAAATTCTGTAA-ACACAAATTCACACGAGACTTTACAAACGTTTTCATTTGTTCTTT 117
Query 23852 AGTGATGCCTTCCATTTCACCCTTCTCAAAAATCATATCAACAATACG 23899
|||||| || ||| ||||| | || || |||||||||| ||||||
Sbjct 116 AGTGATACCAGGCATATCACCGTGTTCGAAGATCATATCAATAATACG 69
>seq520451
Length=342
Score = 100 bits (110), Expect = 9e-17
Identities = 237/347 (68%), Gaps = 11/347 (3%)
Strand=Plus/Minus
Query 22767 TTTCCACTCATCATACTTCTCCAAATTCATGGACGACAGAACACAAGTGAATGTATGGTC 22826
|||||| ||||| ||||| | || ||||| || || ||||| || || ||||||||
Sbjct 342 TTTCCATTCATCGTACTTAGCTAAGTTCATAGAACTCAATACACATGTAAACGTATGGTC 283
Query 22827 TGCGTCACTAAACAATGTAATCTCAGTGCAAAGGTTAGAGGCTTTAAC-TTCAAGACCTC 22885
||||||||||| | || || | || | |||||| ||||| || |||||| ||
Sbjct 282 GATATCACTAAACAAGTTGATTTCGATACATAAGTTAGACGCTTTTACTTTCAAG-CCCA 224
Query 22886 TGTCCTTATACATCTGAGG-GTTCATGGCGTTAACTGTATCAGGCTTA--AAGAAATAGC 22942
|||| || ||||| || || | | | | ||| || | || | ||| ||| |||| |
Sbjct 223 TGTCTTTGTACATTTGTGGTGATAAACG-GTTCACGTTGTC--GATTAGTAAGTAATAAC 167
Query 22943 CCTTACCAGTGATGGCCTTAACATACATTGCCCTTTGGAAGCGTTGTA-CAGCGTCTGTG 23001
| |||||||| | ||||| || | ||| | | |||||| || |||| || ||| |
Sbjct 166 CTTTACCAGTTACTGCCTTTACTTTCATCGAACGTTGGAAACG-TGTATGTGCATCTATA 108
Query 23002 TCGCCAGCTTCTAGACGGTTGATGAAGTCTTGACTGATGTTCCAACCAATGTTTAGATCA 23061
|| ||||| | | | |||||| | | | ||||| ||||||| | ||| | ||||
Sbjct 107 TCACCAGCATTCAATCTTGCGATGAAAGCATCAGTGATGATCCAACCCAAGTTCAAATCA 48
Query 23062 TCAGGGAAGTTCTTC-AAGTAGTCTACGATTTCGTAGAAGTCTCCGT 23107
|| ||| | | | | ||||| || || | || |||||| ||||
Sbjct 47 TCTGGGTAATGTTCCAAAGTAATCCACTAACTCAGGGAAGTCACCGT 1
>seq498376
Length=1043
Score = 89.7 bits (98), Expect = 2e-13
Identities = 180/263 (68%), Gaps = 8/263 (3%)
Strand=Plus/Minus
Query 31711 CCCTTCTTAACGCAC-AAGATAACTTCATCGTGCATTTGACCAGTGAGTTGAGGT---CG 31766
|||||||||| || | |||||||||||||| || | || |||| ||||||||| ||
Sbjct 665 CCCTTCTTAA-GCTCTAAGATAACTTCATCATGGAACTGTGCAGTTAGTTGAGGTCTACG 607
Query 31767 TTTCTTTCTAAAATTGCCTATCCATACATCAAAACAATAAACTCCCGTACCTTGGTTGAG 31826
|||| || | | | || |||| |||||| |||||| || ||| ||||| |
Sbjct 606 TTTCATT---ATGTAGAATACCCATCTATCAAAGCAATAAGTACCAGTAGACTGGTTTAA 550
Query 31827 CGTTGAGAACCTATCTTTTTCATGACGCAAGCTGTACCAGAATCCACTCACTGGATTGTA 31886
|| |||||||||||||| ||| | ||| |||| | | || || || || |
Sbjct 549 GGTAGAGAACCTATCTTTATCAGCTCTTAAGAACAACCACAGTTCAGCTACAGGGTTCCA 490
Query 31887 CAACCACTTCATTCCATTGCATACCTTAACTCTCTGGTCTTCAGCAATACGTTTGACTGA 31946
| ||||||||||||| | ||||||| | || ||||| ||| | | | ||
Sbjct 489 TAGCCACTTCATTCCACGTGAGTTCTTAACTATACACTCATCAGCTATAGCTGTAAGAGA 430
Query 31947 CCAGTTACGTTGCCAATACGCAT 31969
|||||| |||| ||| || ||||
Sbjct 429 CCAGTTTCGTTTCCAGTAGGCAT 407
>seq511525
Length=313
Score = 82.4 bits (90), Expect = 2e-11
Identities = 126/175 (72%), Gaps = 6/175 (3%)
Strand=Plus/Minus
Query 22089 TTCATCAGCGTCAAAGAACAAA-TTAAGTGACTGTGCTTGACAGATGTAAGGCTGTCGAG 22147
||| ||||| |||||||| ||| || | |||||| ||||||| || | || || ||||
Sbjct 278 TTCGTCAGCATCAAAGAAAAAAGTTCAATGACTGCCCTTGACAAATATCTGGTTGACGAG 219
Query 22148 CTGCTGCTAATCTAACCAGAGCTGCTTGATCCACCTCATAAGCCGTCTTGAATAC-AGCT 22206
| || ||||| | || | ||| ||||| | ||| | || ||||||||||| | |
Sbjct 218 CAGCAGCTAAACGAATAATCGCTCGCTGATCGATTTCAAATGCTGTCTTGAATACTAATT 159
Query 22207 TTCTCTT--TCGGACTAAGCCAATCAAGATGTTGTACACTACCTTCAGTTTCAGT 22259
||||| | || | | | ||| |||| |||||| ||| |||||| |||||||
Sbjct 158 TTCTCGTGATCTG--TCATCCATTCAATATGTTGAACAGAACCTTCGTTTTCAGT 106
>seq385007
Length=1275
Score = 82.4 bits (90), Expect = 2e-11
Identities = 131/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 22387 ATACCTTGGGAGACGCCCCCACAGATAAGAGCAGAAGATGTGTTGGGGGCAATAGAAAGT 22446
|||||||| || | ||| | || || ||||||||| ||| || || | | |
Sbjct 897 ATACCTTGTGACTCTGAACCAAATATTAGTGCAGAAGATACGTTAGGTGCTAGTGCTGTT 956
Query 22447 AGATGAGTGTTCCTAACACCATAACCTTTACACCACTCAGGTTCACCCCAAGCTTTCGCC 22506
| ||||| || | |||||||||||||||||||| ||||| || ||||| | |||
Sbjct 957 CGGTGAGTATTACGTACACCATAACCTTTACACCAATCAGGCTCTCCCCATTGCTCAGCC 1016
Query 22507 ATCCACTTCGTAGCACGAGTAGCTTCCTCATGTAGATGTTGGAAGATTTCCAAGTTGACC 22566
|| |||| | ||| | | ||| ||||||||||||| | | ||||| ||||| |
Sbjct 1017 ATAAACTTAGAAGCTCTTAATGATTCATCATGTAGATGTTTAGATACTTCCATGTTGAAC 1076
Query 22567 ATGTGAGC 22574
||||| ||
Sbjct 1077 ATGTGTGC 1084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160499340765204
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |