Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq152719 122 2e-22 seq152718 111 4e-19 seq6427 104 5e-17 seq59939 91.5 3e-13 seq388653 89.7 1e-12 >seq152719 Length=2073 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| ||||||| |||||||| ||||||||||| |||| | ||| | || ||||| Sbjct 289 GACCAGATGAATGCAGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTC 348 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || || ||||| ||||| |||||||||||||| | | ||| |||||||| || || Sbjct 349 CAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTG 408 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || ||||||| |||| | | |||| || || | ||||| ||||| || Sbjct 409 GATCTTAGCTTTGACATTCTCAATGGTGTCGTTGGGTTCAACCACCAGAGTGATAGTCTT 468 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| ||||| |||||||| |||| ||| || Sbjct 469 GCCTGTGAGGGTCTTCACAAAGATCTGAAT 498 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || | ||| |||||||| || || |||||||| ||||||||||| |||| | ||| Sbjct 50 CTCAGGCGGAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTG 109 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | || ||||| || || ||||| ||||| ||||||||||| || | | ||| || Sbjct 110 CGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCC 169 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || ||||||| |||| | | |||| || || || ||| Sbjct 170 TCCTTATCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGA 229 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | || || || || |||||||| |||| |||||| Sbjct 230 GTGATGGACTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 270 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| | || || ||||| |||||||| ||||| | | || | |||||| Sbjct 515 AGCACAAGATGGATGGTGGATTCTTTCTGGATGTTATAATCTGACATGGTGCGACCATCT 574 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| ||||||||||| || | | ||| || ||||| || Sbjct 575 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTATCC 634 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||| ||| |||| | | |||| || || || ||||| ||||| Sbjct 635 TGGATCTTAGCTTTTACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATAGTC 694 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || |||||||| |||| |||||| || Sbjct 695 TTACCAGTCAGGGTCTTCACAAAGATCTGCATCTT 729 >seq152718 Length=3078 Score = 111 bits (122), Expect = 4e-19 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| ||||| || ||||||||||| |||||| |||| |||| | ||| | | ||||| Sbjct 2392 GACCAGATGGAGGGTAGACTCTTTCTGGATGCTGTATTCGGAGAGAGTGCGGCTGTCTTC 2451 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || || ||| | ||| | |||||||||||||| | | || ||||||||| ||||| Sbjct 2452 CAGCAGCTTGCCGCCAAAGTTGAGCCTCTGCTGGTCTGTAGGGAATCCTTCCTTATCTTG 2511 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGT 152071 || || ||||| | | || | | |||| ||| || || || |||| ||||| Sbjct 2512 GATCTTGGCTTTGAAATTATCAATGGTGTC---ACTGGGTTCAACCTCCAGAGCTATAGT 2568 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| |||||||| |||| ||| || Sbjct 2569 CTTCCCTGTGAGGGTCTTCACAAAGATCTGAAT 2601 >seq6427 Length=3314 Score = 104 bits (114), Expect = 5e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || | |||||||||||| || || ||||| || ||||||||||| |||| | || Sbjct 3114 CTCAGACGGAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 3173 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || || ||||| ||||| ||||||||||| || | | || ||| Sbjct 3174 CGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCT 3233 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || |||||| | || | | |||| ||| || || || Sbjct 3234 TCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGCTGGGCTCAACCTCCAGG 3293 Query 152064 GTAATAGTTTTGCCCGTGAG 152083 || || || ||||||||||| Sbjct 3294 GTGATGGTCTTGCCCGTGAG 3313 >seq59939 Length=800 Score = 91.5 bits (100), Expect = 3e-13 Identities = 119/163 (73%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 151947 CCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 |||||||| || ||||| ||||| ||||| ||||||||||| || | | || |||| Sbjct 8 CCATCTTCCAGCTGCTTT--CCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTT 65 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 |||| || || || || |||||| | || | |||| | ||| || || || | Sbjct 66 CCTTGTCCTGGATCTTGGCCTTGACATTTTCGATTGTGTCACTAGGCTCAACCTCGAGGG 125 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || || ||||||||||| |||||||| |||| |||||| || Sbjct 126 TGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 168 >seq388653 Length=382 Score = 89.7 bits (98), Expect = 1e-12 Identities = 125/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 115611 ATGAGGGCAAGGGAGATTTTCTATGCCATTTGGACATCTGATCTTTTTATGAAGCGAGTC 115670 ||| | ||||| || | |||| |||||| ||||| |||||| | || ||||| || || Sbjct 16 ATGCGTGCAAGAGATTTATTCTTTGCCATGTGGACTTCTGATTTATTCATGAAACGTGTA 75 Query 115671 AAGGCAAACGGAATGTGGAGCCTCTTTTGTCCCAATGAAGCCCCTGGTCTTGATGATGTT 115730 | | | |||||| |||| | | ||||| || ||| ||||| | | |||||| Sbjct 76 CAAGAAGACGGAAACTGGACTTTAATGTGTCCTAACGAATGTCCTGGATTGTACGATGTT 135 Query 115731 TATGGTCCAGAGTTTG-AGAATCTTTACGAAAGGTACGAGAAAGAGGGAAGAG 115782 |||||| |||||||| || || | || ||||| |||||||||| |||| || Sbjct 136 TATGGTGAAGAGTTTGAAGCAT-TATATGAAAGCTACGAGAAAGCTGGAAAAG 187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1146052131043842