Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_031902.1 Length=125114 Score E Sequences producing significant alignments: (Bits) Value seq426744 206 2e-48 seq435060 163 2e-35 seq506238 107 2e-18 seq510012 100 2e-16 seq450559 98.7 8e-16 seq484804 87.8 1e-12 seq508595 86.0 5e-12 >seq426744 Length=341 Score = 206 bits (228), Expect = 2e-48 Identities = 209/266 (79%), Gaps = 7/266 (3%) Strand=Plus/Plus Query 105798 ACGTTGCAGGTTAACACGCTGGGTAACGTAGTATGCATCACGCTGTTTGCCAGCTTGGCG 105857 |||||| ||||||| ||| || || ||||||||||||||||| || || |||||||| || Sbjct 78 ACGTTGTAGGTTAAGACGTTGAGTTACGTAGTATGCATCACGTTGCTTACCAGCTTGACG 137 Query 105858 CTCACGTTCAACAGTAACGGCACGCTGACGCGGCATTACGAAGTTATCTTTATAAACAAT 105917 ||||||||| || |||| | ||| ||||| || | |||||||| || ||||| || Sbjct 138 CTCACGTTCTACTGTAATAGTACGTTGACGAGGAACAACGAAGTTCTCACGGTAAACGAT 197 Query 105918 AACTGCGAATTC--AGCGGAAGCAGCTTTAGCTGGGAAGTACTCAGAAACTACAACCGGC 105975 | |||||| | | || ||||||||||||||||||| | |||||||| ||| | Sbjct 198 AGTACAGAATTCTGAACTGA--CAGCTTTAGCTGGGAAGTAGTTAGAAACTAGAACTGCT 255 Query 105976 AGACCGTAAATACGACCAACCTGACCCTGCAG-TTTAAC-AG-CATCGTTACCAACCTGG 106032 |||||||| ||||||||||| || || || || |||||| || ||| |||||| ||| Sbjct 256 AGACCGTAGATACGACCAACTTGTCCTTGAAGTTTTAACGAGTTATCCGCACCAACTTGG 315 Query 106033 GCAACATCCTGCCATTCTTCATCTTC 106058 |||||||||||||||||||||||| Sbjct 316 TTAACATCCTGCCATTCTTCATCTTC 341 >seq435060 Length=507 Score = 163 bits (180), Expect = 2e-35 Identities = 335/492 (68%), Gaps = 27/492 (5%) Strand=Plus/Plus Query 76910 AACATGAAGAATGAGCCTGATAAATATCCTGACTTCCACTCAAACATCGCGCACATGGTA 76969 || ||||| | || ||| || ||||| ||||||||| ||||| || |||||||| Sbjct 23 AAGATGAAAGAAGATCCTACCAAGTATCCCGACTTCCACAGTAACATAGCTCACATGGTG 82 Query 76970 TTTAAACTGACCTGTGAGCCACGTGATGTTAAGAAGCTGTTCCCAGCTCTGCGTCAGGCT 77029 ||||| || | ||| |||| || |||||||| || |||||||| || | |||||| Sbjct 83 TTTAACCTACCTTGTAAGCCTGAGGAAGTTAAGAAACTATTCCCAGCCCTAAGGCAGGCT 142 Query 77030 GCTAAGGCAATTACCTTCGGTATTCTGTATGGTTCTGGCCCAGCGAAAGTAGCTCATTCT 77089 || ||||| || || || |||||||| | ||||| || |||| ||||| | Sbjct 143 GCGAAGGCGATAACATTTGGTATTCTATTCGGTTCAGGAGCAGCATCTGTAGCAGAGCAA 202 Query 77090 GTTAACGAAGCTCTTCTGGAACAGGCTGCTAAGACAGGTGAACCGTTTGT--TGAATGTA 77147 |||||| |||| || ||| | || ||| ||| ||| |||| | || | Sbjct 203 GTTAACTTAGCTAAGCTAGAATTAGGTG--AAG-CAGCTGA-----TTGTACTAAAGAAA 254 Query 77148 CCGTTGCAGATGCGAAGGACTATATCGAAACTTACTTCGGTCAGTTCCCTCAGCTTAA-G 77206 || |||| | || |||||| |||||| | ||||||| ||||| | Sbjct 255 TCGCCGCAGGT---------TACATCGAAGTGTACTTCAAGCGGTTCCCTAGACTTAAAG 305 Query 77207 CGTTGGATTGATAAGTGCCACGATCAGATCA---AGAACTTTGGATTCATCTATAGTCAC 77263 ||| |||||||| || || ||| | ||| |||| ||||| || || | ||| Sbjct 306 CGT-GGATTGATTCTTGTCATGATGAAATCCGTCAGAAA---GGATTTATATACAACCAC 361 Query 77264 TTTGGTCGTAAGCGTCGTCTGCACAACATCCATTCCGAAGATCGTGGTGTTCAGGGTGAA 77323 || || ||||||||| | | ||||||||| ||| ||| | || ||| |||| | Sbjct 362 TTCGGCCGTAAGCGTAGATTACACAACATCTCTTCTAGCGATAGAGGCGTTGTAGGTGGA 421 Query 77324 GAAATCCGTTCTGGATTTAACGCAATCATTCAGTCTGCATCTTCTGATAGCCTCCTGTTA 77383 ||||||||||| |||||||| || ||||| |||||||| || |||||| | | ||| || Sbjct 422 GAAATCCGTTCAGGATTTAATGCTATCATACAGTCTGCGTCATCTGATCACTTACTGCTA 481 Query 77384 GGTGCTATTGAT 77395 || ||| | ||| Sbjct 482 GGAGCTGTAGAT 493 >seq506238 Length=275 Score = 107 bits (118), Expect = 2e-18 Identities = 128/172 (74%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 28896 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGCGTCAATGCGTTAAATCGAACA 28955 ||||||||||| | | ||||| | ||||||||| | || |||| |||||| || || Sbjct 52 GTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATGAGTTAAAACGCACT 111 Query 28956 GCATAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGCATC- 29014 || || || || ||||| || || || || |||||||||||||| ||||| ||||| Sbjct 112 GCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGTGTTTAACAGCATCT 171 Query 29015 -CAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCCTC 29065 | || | | ||||| | ||||||||| || |||| || |||||||| || Sbjct 172 TCCAATGTT--TCACGACGTAACACATTCACGTTTAAATGTTGACCACCTTC 221 >seq510012 Length=1165 Score = 100 bits (110), Expect = 2e-16 Identities = 148/203 (73%), Gaps = 10/203 (5%) Strand=Plus/Minus Query 40703 ATCAACTTCACAATACGTTCGGCCATATTCTTCTACCCACGAAGTGTTGTATAGCTTCGC 40762 ||||||||||||||| | || ||||| ||||||| ||| ||||||||| ||| || || Sbjct 1114 ATCAACTTCACAATAGTTACGACCATACTCTTCTA-CCAAGAAGTGTTGAATACTTTGGC 1056 Query 40763 AAGGTATTTTGTTAAAGTAGTCTTTCCCGAGCTT---TCAGTCCCAATGATTACAACCTT 40819 ||||| ||||| | ||| ||||| | ||| ||||| |||||||| ||| |||| Sbjct 1055 GAGGTACTTTGTAAGGGTACTCTTT---GCACTTGACTCAGTACCAATGATAACAGCCTT 999 Query 40820 ACGCACGTAATCTTTACGAACTACGCTAGG-AAGAAACTCCCAATACTTCATA-AGATCA 40877 || | | |||||||| |||| ||| | | ||| ||| ||||| ||| || Sbjct 998 TAACAAGAACTCTTTACGGACTAGAGAAGGTAGGTTACTGCCAGTACTT-ATAGGGAGAC 940 Query 40878 TTACGAATCATTGTAGCTGAGAT 40900 | ||| ||| ||||||| ||||| Sbjct 939 TGACGTATCTTTGTAGCAGAGAT 917 >seq450559 Length=633 Score = 98.7 bits (108), Expect = 8e-16 Identities = 167/238 (70%), Gaps = 8/238 (3%) Strand=Plus/Plus Query 59347 CTGGAGTATGAAATCAATACGATGTTCAACTCTAATGGTCAAAGTCCGTTTATTACCTTT 59406 || || |||||| | ||||| || | | ||||||| |||| |||||| |||||||| Sbjct 329 CTTGAATATGAAGTGAATACCTTGCATACCGCTAATGGCCAAACACCGTTTGTTACCTTT 388 Query 59407 GGTTTTGGTCTAGGAACTTCTTGGGAAGCACGTCTTGTACAGAAAGCAATACTAGAAGTA 59466 ||||||||| |||| || ||||| | ||| | | ||| || | || || |||| Sbjct 389 GGTTTTGGTTTAGGCGTGTCGTGGGAGTCGCGTTTAATTCAGCAATCGATGTTAACAGTA 448 Query 59467 CGTATGGATGGTTTGGGTATCAAT---AAACGTACAGCTATCTTCCCTAAACTGGTATTT 59523 ||||||| ||||| |||| ||| ||| ||||| |||| || ||| |||| ||| Sbjct 449 CGTATGGCGGGTTTAGGTAAAAATCGCAAA---ACAGCAGTCTTTCCAAAATTGGTGTTT 505 Query 59524 GTTTTGCGTGAGGGCGT-AAACATGAAACCTGGTGATGTTAACTATGATATCAAGAAG 59580 | | || ||||| || ||| ||| | ||||| ||| |||||||| || ||| Sbjct 506 GCCATTAAAGATGGCGTGAATCAT-AAAGCGACTGATGCTAATTATGATATTAAAAAG 562 >seq484804 Length=980 Score = 87.8 bits (96), Expect = 1e-12 Identities = 245/365 (67%), Gaps = 17/365 (5%) Strand=Plus/Plus Query 52763 AATTTCTC--CACGATCGTCAATCCCTCTT---TTCAAATTATGATAGACTTTGGCTAAC 52817 ||| |||| | ||||| ||||| ||| || ||||| |||| | | ||| | | Sbjct 4 AATATCTCAGCGCGATCATCAATACCTTTTGGATTCAAGTTATCAACAATTTTTTTCAGC 63 Query 52818 TGATCAAA--TACCATACCATCAGAATTAGTCCAATGACGTCCTTGAACACCATAGACTC 52875 || |||| ||||| ||||||| |||| ||| ||| ||||||| || || || | Sbjct 64 TGGTCAATGCTACCA--CCATCAGGCTTAGCCCATGCACGGCCTTGAATCCCGTAAACGC 121 Query 52876 GTCCCATATCATCCTCGCCTTTACG--GAATGGATTACCTAGCCAGGCAATATTTTCATT 52933 | ||||||||||| || ||||| || ||||| ||| ||||| ||| |||| ||| Sbjct 122 GCCCCATATCATCTTCACCTTTGCGGTGAATG--TTATTAAGCCAAGCATCATTTAAATT 179 Query 52934 TGCATTAGCATTCCATGTATTAACACCAATAGCGCGGAATTGTGCTGCTGAGTCGTACCC 52993 |||||||||| ||| || ||| ||| | || || | || || ||| || || Sbjct 180 GGCATTAGCATCCCAGGTTTTAGTACCTAGTTTACGAAAATCAGCGGCATTGTCATAACC 239 Query 52994 ACGGAGATATCCGATCATTTCCATTATTGCTTGTTTAGCAAATGCT-TTACGAGTAGTTA 53052 ||||| ||| || || | || || || || | | ||| ||| ||||| ||||||| Sbjct 240 ACGGATATAACCAATAAACTCAGCAATCGC-TGACTTGAAAAAGCTCTTACGCGTAGTTA 298 Query 53053 CTAGCGGCAGTTCTCCTGCTCCTACGTT-AAAGGTAAAGTCTGCATCAATAATGGTTAGG 53111 || || | || || || || || | ||||| || |||| ||| | ||||| Sbjct 299 TTAATGGAAACTCGTTAGCACCAACATTGTATTGTAAA-TCAGCATTAATGACGGTTAAA 357 Query 53112 CAACG 53116 ||||| Sbjct 358 CAACG 362 >seq508595 Length=419 Score = 86.0 bits (94), Expect = 5e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 30627 TGGTGCGGGATACGAGAGTCGAACTCGTGTCTACTGGTTGGAAGCCAGTTATTCTAGCCA 30686 |||||||| || |||| |||||||| |||||||| |||||||||||||||||| ||| Sbjct 354 TGGTGCGGAATTAGAGATTCGAACTCTAATCTACTGGGTGGAAGCCAGTTATTCTA-CCA 296 Query 30687 CTGAACTAATCACGCAT 30703 |||||||||| ||||| Sbjct 295 TTGAACTAATCCCGCAT 279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397676640656650