Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_031928.1 Length=169936 Score E Sequences producing significant alignments: (Bits) Value seq449735 183 3e-41 seq509673 125 8e-24 >seq449735 Length=3187 Score = 183 bits (202), Expect = 3e-41 Identities = 484/733 (66%), Gaps = 11/733 (2%) Strand=Plus/Minus Query 143054 TAGTTGGGATAGCAATTTCACAACACAAGTTGCTCTGGCGAATAGGAGCTTTCTCACGAA 143113 ||||||| | |||||||| |||| || || ||||||||||| || | | || Sbjct 754 TAGTTGGTAATGCAATTTCTAAACATAAATTAGATTGGCGAATAGGTGCCACTTTAGCAA 695 Query 143114 TAAATGGTGTGAAGTTGTTAGTGTTATCAACGAATTGAGGATAAATTCGTGCAGTGCCTG 143173 | || || || | ||| || |||||| ||| ||||| || | || | || Sbjct 694 TGAACGGGCTGTGCGTATTACAGTGGTCAACGTTTTGTAAGTAAATACGACCGGTACTTG 635 Query 143174 AACGTTCAGTCATGAACAATTCAAAGAGGTCACGTGCCTTAATACGTTTCTTACGAATAC 143233 |||||| | |||| | || || ||| || ||||| ||||| |||||||| Sbjct 634 CACGTTCTTGCGCAAACATTGAGAACAGTTCAATAGCTTTAATGCGTTTTTTACGAATTG 575 Query 143234 TAGGGTCTTTTTCTGCGGCTTCATACAATTCACGG-AAACG-GTCTTGGTCTTCGAAATA 143291 ||||| ||| | |||| | | || |||| |||||||||||| ||| | Sbjct 574 ATTCGTCTTGTTCGTATTTTACATAAAG--CGCGTCAAACTCGTCTTGGTCTTCAAAAAA 517 Query 143292 AGAATAGTAAAGCTCACCACCCATTTCATGAGGACTAAACAGAGTAATGTAATCATTCTT 143351 | || |||||| || || ||| || ||||||| |||||||| || | || Sbjct 516 TGCATCGTAAAGG---CCTGGCACATCAGAGGGGCTAAACAAGGTAATGTAGTCGTCTTT 460 Query 143352 ACCGAAACGTTCCATCATCAGGTCGTTCAACTGGATTCCATAGTCCATATGACGAATACG 143411 | ||||| ||| || | || ||||| | || || || | |||||| | || Sbjct 459 AATTAAACGCGAGTACATTAGTTTATTAAACTGTACGCCGTAATCTAAATGACGCACGCG 400 Query 143412 GTTCTCATCGACACCCTTGTTGTTTTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCA 143471 ||| ||||| || || ||| ||||| || || | ||| ||||| ||||| |||||||| Sbjct 399 GTTGTCATCAACCCCGCGGTTATTTTTAAGTACTAACAGGTTTTCTACTTCTAAATGCCA 340 Query 143472 AATAGGATA--ATAAGCAGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTA 143529 || || || | ||| || || ||||||||||| | || ||||| ||||| |||| Sbjct 339 AAGCGGGTAGAACAAG--GTTGCTGCGCCGCCACGTACACCGCCTTGCGAACAGCTTTTA 282 Query 143530 ACAGCAGTCTGGAAATGTTTCCAGAATGGAATAACACCGGTATGCTTGACTTCGCCCATG 143589 || || || || || || || | || |||||| ||| ||||| | ||||||| || Sbjct 281 ACCGCTGTTTGAAAGTGCTTATAAAAAGGAATACAACCCGTATGGTACGCTTCGCCATTG 222 Query 143590 CCAATACGAGAACCTTCAGCACGAATCATACCAACGTTGATACCAATACCGGCACGTTTA 143649 | ||| | ||| |||||||| ||| |||| || ||||| |||||||||| Sbjct 221 CGAATGTGGCTACCCAGTGCACGAATGCGACCTGCGTTAATGCCAATGCCGGCACGTTGC 162 Query 143650 GAAATGTATTCAATTATTGAGTTAGCAGTTTTGTTAATAGATTTCAGTGAGTCGCCTGCT 143709 || | ||||| || |||| | || |||||| || | || |||||| Sbjct 161 GATACGTATTTAACAATTGCAGACGAGGTGGCGTTAATTGAATCAAGGCTGTCGCCACAC 102 Query 143710 TCAATAACCACACAAGAACTAAATTGACGGGTTGGTGTACGTGCTCCAGCCATAATAGGA 143769 || || | ||||| || ||||| || || ||||| ||||| | || |||||||| || Sbjct 101 TCTATTAATACACACGAGCTAAACTGGCGTGTTGGCGTACGAACACCTGCCATAATTGGC 42 Query 143770 GTTGGTAATGAAA 143782 || |||| ||||| Sbjct 41 GTAGGTAGTGAAA 29 >seq509673 Length=441 Score = 125 bits (138), Expect = 8e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 143377 TTCAACTGGATTCCATAGTCCATATGACGAATACGGTTCTCATCGACACCCTTGTTGTTT 143436 || ||||| | || || ||||||||||| | |||||| || || || || ||| ||| Sbjct 222 TTTAACTGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATTT 281 Query 143437 TTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCG 143496 ||||| || | | |||||||| |||||||| | || ||| | || || || Sbjct 282 TTCAGTACCAATAATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGCA 341 Query 143497 CCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAAT 143556 |||||||||| || |||||||| || ||||||||||||| ||||| |||| ||||| Sbjct 342 CCGCCACGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAAT 401 Query 143557 GGAATAACACCGGTATGCTTGACTTCGCC 143585 || ||| ||| ||||||| ||||||| Sbjct 402 GGGATACAACCCGTATGCTGCGCTTCGCC 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540095972488320