Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_031933.1
Length=114180
Score E
Sequences producing significant alignments: (Bits) Value
seq426744 206 2e-48
seq435060 163 2e-35
seq506238 107 1e-18
seq510012 100 2e-16
seq450559 98.7 7e-16
seq484804 87.8 1e-12
seq508595 86.0 5e-12
>seq426744
Length=341
Score = 206 bits (228), Expect = 2e-48
Identities = 209/266 (79%), Gaps = 7/266 (3%)
Strand=Plus/Plus
Query 104910 ACGTTGCAGGTTAACACGCTGGGTAACGTAGTATGCATCACGCTGTTTGCCAGCTTGGCG 104969
|||||| ||||||| ||| || || ||||||||||||||||| || || |||||||| ||
Sbjct 78 ACGTTGTAGGTTAAGACGTTGAGTTACGTAGTATGCATCACGTTGCTTACCAGCTTGACG 137
Query 104970 CTCACGTTCAACAGTAACGGCACGCTGACGCGGCATTACGAAGTTATCTTTATAAACAAT 105029
||||||||| || |||| | ||| ||||| || | |||||||| || ||||| ||
Sbjct 138 CTCACGTTCTACTGTAATAGTACGTTGACGAGGAACAACGAAGTTCTCACGGTAAACGAT 197
Query 105030 AACTGCGAATTC--AGCGGAAGCAGCTTTAGCTGGGAAGTACTCAGAAACTACAACCGGC 105087
| |||||| | | || ||||||||||||||||||| | |||||||| ||| |
Sbjct 198 AGTACAGAATTCTGAACTGA--CAGCTTTAGCTGGGAAGTAGTTAGAAACTAGAACTGCT 255
Query 105088 AGACCGTAAATACGACCAACCTGACCCTGCAG-TTTAAC-AG-CATCGTTACCAACCTGG 105144
|||||||| ||||||||||| || || || || |||||| || ||| |||||| |||
Sbjct 256 AGACCGTAGATACGACCAACTTGTCCTTGAAGTTTTAACGAGTTATCCGCACCAACTTGG 315
Query 105145 GCAACATCCTGCCATTCTTCATCTTC 105170
||||||||||||||||||||||||
Sbjct 316 TTAACATCCTGCCATTCTTCATCTTC 341
>seq435060
Length=507
Score = 163 bits (180), Expect = 2e-35
Identities = 335/492 (68%), Gaps = 27/492 (5%)
Strand=Plus/Plus
Query 76022 AACATGAAGAATGAGCCTGATAAATATCCTGACTTCCACTCAAACATCGCGCACATGGTA 76081
|| ||||| | || ||| || ||||| ||||||||| ||||| || ||||||||
Sbjct 23 AAGATGAAAGAAGATCCTACCAAGTATCCCGACTTCCACAGTAACATAGCTCACATGGTG 82
Query 76082 TTTAAACTGACCTGTGAGCCACGTGATGTTAAGAAGCTGTTCCCAGCTCTGCGTCAGGCT 76141
||||| || | ||| |||| || |||||||| || |||||||| || | ||||||
Sbjct 83 TTTAACCTACCTTGTAAGCCTGAGGAAGTTAAGAAACTATTCCCAGCCCTAAGGCAGGCT 142
Query 76142 GCTAAGGCAATTACCTTCGGTATTCTGTATGGTTCTGGCCCAGCGAAAGTAGCTCATTCT 76201
|| ||||| || || || |||||||| | ||||| || |||| ||||| |
Sbjct 143 GCGAAGGCGATAACATTTGGTATTCTATTCGGTTCAGGAGCAGCATCTGTAGCAGAGCAA 202
Query 76202 GTTAACGAAGCTCTTCTGGAACAGGCTGCTAAGACAGGTGAACCGTTTGT--TGAATGTA 76259
|||||| |||| || ||| | || ||| ||| ||| |||| | || |
Sbjct 203 GTTAACTTAGCTAAGCTAGAATTAGGTG--AAG-CAGCTGA-----TTGTACTAAAGAAA 254
Query 76260 CCGTTGCAGATGCGAAGGACTATATCGAAACTTACTTCGGTCAGTTCCCTCAGCTTAA-G 76318
|| |||| | || |||||| |||||| | ||||||| ||||| |
Sbjct 255 TCGCCGCAGGT---------TACATCGAAGTGTACTTCAAGCGGTTCCCTAGACTTAAAG 305
Query 76319 CGTTGGATTGATAAGTGCCACGATCAGATCA---AGAACTTTGGATTCATCTATAGTCAC 76375
||| |||||||| || || ||| | ||| |||| ||||| || || | |||
Sbjct 306 CGT-GGATTGATTCTTGTCATGATGAAATCCGTCAGAAA---GGATTTATATACAACCAC 361
Query 76376 TTTGGTCGTAAGCGTCGTCTGCACAACATCCATTCCGAAGATCGTGGTGTTCAGGGTGAA 76435
|| || ||||||||| | | ||||||||| ||| ||| | || ||| |||| |
Sbjct 362 TTCGGCCGTAAGCGTAGATTACACAACATCTCTTCTAGCGATAGAGGCGTTGTAGGTGGA 421
Query 76436 GAAATCCGTTCTGGATTTAACGCAATCATTCAGTCTGCATCTTCTGATAGCCTCCTGTTA 76495
||||||||||| |||||||| || ||||| |||||||| || |||||| | | ||| ||
Sbjct 422 GAAATCCGTTCAGGATTTAATGCTATCATACAGTCTGCGTCATCTGATCACTTACTGCTA 481
Query 76496 GGTGCTATTGAT 76507
|| ||| | |||
Sbjct 482 GGAGCTGTAGAT 493
>seq506238
Length=275
Score = 107 bits (118), Expect = 1e-18
Identities = 128/172 (74%), Gaps = 4/172 (2%)
Strand=Plus/Plus
Query 28005 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGCGTCAATGCGTTAAATCGAACA 28064
||||||||||| | | ||||| | ||||||||| | || |||| |||||| || ||
Sbjct 52 GTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATGAGTTAAAACGCACT 111
Query 28065 GCATAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGCATC- 28123
|| || || || ||||| || || || || |||||||||||||| ||||| |||||
Sbjct 112 GCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGTGTTTAACAGCATCT 171
Query 28124 -CAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCCTC 28174
| || | | ||||| | ||||||||| || |||| || |||||||| ||
Sbjct 172 TCCAATGTT--TCACGACGTAACACATTCACGTTTAAATGTTGACCACCTTC 221
>seq510012
Length=1165
Score = 100 bits (110), Expect = 2e-16
Identities = 148/203 (73%), Gaps = 10/203 (5%)
Strand=Plus/Minus
Query 39814 ATCAACTTCACAATACGTTCGGCCATATTCTTCTACCCACGAAGTGTTGTATAGCTTCGC 39873
||||||||||||||| | || ||||| ||||||| ||| ||||||||| ||| || ||
Sbjct 1114 ATCAACTTCACAATAGTTACGACCATACTCTTCTA-CCAAGAAGTGTTGAATACTTTGGC 1056
Query 39874 AAGGTATTTTGTTAAAGTAGTCTTTCCCGAGCTT---TCAGTCCCAATGATTACAACCTT 39930
||||| ||||| | ||| ||||| | ||| ||||| |||||||| ||| ||||
Sbjct 1055 GAGGTACTTTGTAAGGGTACTCTTT---GCACTTGACTCAGTACCAATGATAACAGCCTT 999
Query 39931 ACGCACGTAATCTTTACGAACTACGCTAGG-AAGAAACTCCCAATACTTCATA-AGATCA 39988
|| | | |||||||| |||| ||| | | ||| ||| ||||| ||| ||
Sbjct 998 TAACAAGAACTCTTTACGGACTAGAGAAGGTAGGTTACTGCCAGTACTT-ATAGGGAGAC 940
Query 39989 TTACGAATCATTGTAGCTGAGAT 40011
| ||| ||| ||||||| |||||
Sbjct 939 TGACGTATCTTTGTAGCAGAGAT 917
>seq450559
Length=633
Score = 98.7 bits (108), Expect = 7e-16
Identities = 167/238 (70%), Gaps = 8/238 (3%)
Strand=Plus/Plus
Query 58458 CTGGAGTATGAAATCAATACGATGTTCAACTCTAATGGTCAAAGTCCGTTTATTACCTTT 58517
|| || |||||| | ||||| || | | ||||||| |||| |||||| ||||||||
Sbjct 329 CTTGAATATGAAGTGAATACCTTGCATACCGCTAATGGCCAAACACCGTTTGTTACCTTT 388
Query 58518 GGTTTTGGTCTAGGAACTTCTTGGGAAGCACGTCTTGTACAGAAAGCAATACTAGAAGTA 58577
||||||||| |||| || ||||| | ||| | | ||| || | || || ||||
Sbjct 389 GGTTTTGGTTTAGGCGTGTCGTGGGAGTCGCGTTTAATTCAGCAATCGATGTTAACAGTA 448
Query 58578 CGTATGGATGGTTTGGGTATCAAT---AAACGTACAGCTATCTTCCCTAAACTGGTATTT 58634
||||||| ||||| |||| ||| ||| ||||| |||| || ||| |||| |||
Sbjct 449 CGTATGGCGGGTTTAGGTAAAAATCGCAAA---ACAGCAGTCTTTCCAAAATTGGTGTTT 505
Query 58635 GTTTTGCGTGAGGGCGT-AAACATGAAACCTGGTGATGTTAACTATGATATCAAGAAG 58691
| | || ||||| || ||| ||| | ||||| ||| |||||||| || |||
Sbjct 506 GCCATTAAAGATGGCGTGAATCAT-AAAGCGACTGATGCTAATTATGATATTAAAAAG 562
>seq484804
Length=980
Score = 87.8 bits (96), Expect = 1e-12
Identities = 245/365 (67%), Gaps = 17/365 (5%)
Strand=Plus/Plus
Query 51874 AATTTCTC--CACGATCGTCAATCCCTCTT---TTCAAATTATGATAGACTTTGGCTAAC 51928
||| |||| | ||||| ||||| ||| || ||||| |||| | | ||| | |
Sbjct 4 AATATCTCAGCGCGATCATCAATACCTTTTGGATTCAAGTTATCAACAATTTTTTTCAGC 63
Query 51929 TGATCAAA--TACCATACCATCAGAATTAGTCCAATGACGTCCTTGAACACCATAGACTC 51986
|| |||| ||||| ||||||| |||| ||| ||| ||||||| || || || |
Sbjct 64 TGGTCAATGCTACCA--CCATCAGGCTTAGCCCATGCACGGCCTTGAATCCCGTAAACGC 121
Query 51987 GTCCCATATCATCCTCGCCTTTACG--GAATGGATTACCTAGCCAGGCAATATTTTCATT 52044
| ||||||||||| || ||||| || ||||| ||| ||||| ||| |||| |||
Sbjct 122 GCCCCATATCATCTTCACCTTTGCGGTGAATG--TTATTAAGCCAAGCATCATTTAAATT 179
Query 52045 TGCATTAGCATTCCATGTATTAACACCAATAGCGCGGAATTGTGCTGCTGAGTCGTACCC 52104
|||||||||| ||| || ||| ||| | || || | || || ||| || ||
Sbjct 180 GGCATTAGCATCCCAGGTTTTAGTACCTAGTTTACGAAAATCAGCGGCATTGTCATAACC 239
Query 52105 ACGGAGATATCCGATCATTTCCATTATTGCTTGTTTAGCAAATGCT-TTACGAGTAGTTA 52163
||||| ||| || || | || || || || | | ||| ||| ||||| |||||||
Sbjct 240 ACGGATATAACCAATAAACTCAGCAATCGC-TGACTTGAAAAAGCTCTTACGCGTAGTTA 298
Query 52164 CTAGCGGCAGTTCTCCTGCTCCTACGTT-AAAGGTAAAGTCTGCATCAATAATGGTTAGG 52222
|| || | || || || || || | ||||| || |||| ||| | |||||
Sbjct 299 TTAATGGAAACTCGTTAGCACCAACATTGTATTGTAAA-TCAGCATTAATGACGGTTAAA 357
Query 52223 CAACG 52227
|||||
Sbjct 358 CAACG 362
>seq508595
Length=419
Score = 86.0 bits (94), Expect = 5e-12
Identities = 66/77 (86%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 29736 TGGTGCGGGATACGAGAGTCGAACTCGTGTCTACTGGTTGGAAGCCAGTTATTCTAGCCA 29795
|||||||| || |||| |||||||| |||||||| |||||||||||||||||| |||
Sbjct 354 TGGTGCGGAATTAGAGATTCGAACTCTAATCTACTGGGTGGAAGCCAGTTATTCTA-CCA 296
Query 29796 CTGAACTAATCACGCAT 29812
|||||||||| |||||
Sbjct 295 TTGAACTAATCCCGCAT 279
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362911928372502
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |