Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_031933.1 Length=114180 Score E Sequences producing significant alignments: (Bits) Value seq426744 206 2e-48 seq435060 163 2e-35 seq506238 107 1e-18 seq510012 100 2e-16 seq450559 98.7 7e-16 seq484804 87.8 1e-12 seq508595 86.0 5e-12 >seq426744 Length=341 Score = 206 bits (228), Expect = 2e-48 Identities = 209/266 (79%), Gaps = 7/266 (3%) Strand=Plus/Plus Query 104910 ACGTTGCAGGTTAACACGCTGGGTAACGTAGTATGCATCACGCTGTTTGCCAGCTTGGCG 104969 |||||| ||||||| ||| || || ||||||||||||||||| || || |||||||| || Sbjct 78 ACGTTGTAGGTTAAGACGTTGAGTTACGTAGTATGCATCACGTTGCTTACCAGCTTGACG 137 Query 104970 CTCACGTTCAACAGTAACGGCACGCTGACGCGGCATTACGAAGTTATCTTTATAAACAAT 105029 ||||||||| || |||| | ||| ||||| || | |||||||| || ||||| || Sbjct 138 CTCACGTTCTACTGTAATAGTACGTTGACGAGGAACAACGAAGTTCTCACGGTAAACGAT 197 Query 105030 AACTGCGAATTC--AGCGGAAGCAGCTTTAGCTGGGAAGTACTCAGAAACTACAACCGGC 105087 | |||||| | | || ||||||||||||||||||| | |||||||| ||| | Sbjct 198 AGTACAGAATTCTGAACTGA--CAGCTTTAGCTGGGAAGTAGTTAGAAACTAGAACTGCT 255 Query 105088 AGACCGTAAATACGACCAACCTGACCCTGCAG-TTTAAC-AG-CATCGTTACCAACCTGG 105144 |||||||| ||||||||||| || || || || |||||| || ||| |||||| ||| Sbjct 256 AGACCGTAGATACGACCAACTTGTCCTTGAAGTTTTAACGAGTTATCCGCACCAACTTGG 315 Query 105145 GCAACATCCTGCCATTCTTCATCTTC 105170 |||||||||||||||||||||||| Sbjct 316 TTAACATCCTGCCATTCTTCATCTTC 341 >seq435060 Length=507 Score = 163 bits (180), Expect = 2e-35 Identities = 335/492 (68%), Gaps = 27/492 (5%) Strand=Plus/Plus Query 76022 AACATGAAGAATGAGCCTGATAAATATCCTGACTTCCACTCAAACATCGCGCACATGGTA 76081 || ||||| | || ||| || ||||| ||||||||| ||||| || |||||||| Sbjct 23 AAGATGAAAGAAGATCCTACCAAGTATCCCGACTTCCACAGTAACATAGCTCACATGGTG 82 Query 76082 TTTAAACTGACCTGTGAGCCACGTGATGTTAAGAAGCTGTTCCCAGCTCTGCGTCAGGCT 76141 ||||| || | ||| |||| || |||||||| || |||||||| || | |||||| Sbjct 83 TTTAACCTACCTTGTAAGCCTGAGGAAGTTAAGAAACTATTCCCAGCCCTAAGGCAGGCT 142 Query 76142 GCTAAGGCAATTACCTTCGGTATTCTGTATGGTTCTGGCCCAGCGAAAGTAGCTCATTCT 76201 || ||||| || || || |||||||| | ||||| || |||| ||||| | Sbjct 143 GCGAAGGCGATAACATTTGGTATTCTATTCGGTTCAGGAGCAGCATCTGTAGCAGAGCAA 202 Query 76202 GTTAACGAAGCTCTTCTGGAACAGGCTGCTAAGACAGGTGAACCGTTTGT--TGAATGTA 76259 |||||| |||| || ||| | || ||| ||| ||| |||| | || | Sbjct 203 GTTAACTTAGCTAAGCTAGAATTAGGTG--AAG-CAGCTGA-----TTGTACTAAAGAAA 254 Query 76260 CCGTTGCAGATGCGAAGGACTATATCGAAACTTACTTCGGTCAGTTCCCTCAGCTTAA-G 76318 || |||| | || |||||| |||||| | ||||||| ||||| | Sbjct 255 TCGCCGCAGGT---------TACATCGAAGTGTACTTCAAGCGGTTCCCTAGACTTAAAG 305 Query 76319 CGTTGGATTGATAAGTGCCACGATCAGATCA---AGAACTTTGGATTCATCTATAGTCAC 76375 ||| |||||||| || || ||| | ||| |||| ||||| || || | ||| Sbjct 306 CGT-GGATTGATTCTTGTCATGATGAAATCCGTCAGAAA---GGATTTATATACAACCAC 361 Query 76376 TTTGGTCGTAAGCGTCGTCTGCACAACATCCATTCCGAAGATCGTGGTGTTCAGGGTGAA 76435 || || ||||||||| | | ||||||||| ||| ||| | || ||| |||| | Sbjct 362 TTCGGCCGTAAGCGTAGATTACACAACATCTCTTCTAGCGATAGAGGCGTTGTAGGTGGA 421 Query 76436 GAAATCCGTTCTGGATTTAACGCAATCATTCAGTCTGCATCTTCTGATAGCCTCCTGTTA 76495 ||||||||||| |||||||| || ||||| |||||||| || |||||| | | ||| || Sbjct 422 GAAATCCGTTCAGGATTTAATGCTATCATACAGTCTGCGTCATCTGATCACTTACTGCTA 481 Query 76496 GGTGCTATTGAT 76507 || ||| | ||| Sbjct 482 GGAGCTGTAGAT 493 >seq506238 Length=275 Score = 107 bits (118), Expect = 1e-18 Identities = 128/172 (74%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 28005 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGCGTCAATGCGTTAAATCGAACA 28064 ||||||||||| | | ||||| | ||||||||| | || |||| |||||| || || Sbjct 52 GTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATGAGTTAAAACGCACT 111 Query 28065 GCATAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGCATC- 28123 || || || || ||||| || || || || |||||||||||||| ||||| ||||| Sbjct 112 GCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGTGTTTAACAGCATCT 171 Query 28124 -CAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCCTC 28174 | || | | ||||| | ||||||||| || |||| || |||||||| || Sbjct 172 TCCAATGTT--TCACGACGTAACACATTCACGTTTAAATGTTGACCACCTTC 221 >seq510012 Length=1165 Score = 100 bits (110), Expect = 2e-16 Identities = 148/203 (73%), Gaps = 10/203 (5%) Strand=Plus/Minus Query 39814 ATCAACTTCACAATACGTTCGGCCATATTCTTCTACCCACGAAGTGTTGTATAGCTTCGC 39873 ||||||||||||||| | || ||||| ||||||| ||| ||||||||| ||| || || Sbjct 1114 ATCAACTTCACAATAGTTACGACCATACTCTTCTA-CCAAGAAGTGTTGAATACTTTGGC 1056 Query 39874 AAGGTATTTTGTTAAAGTAGTCTTTCCCGAGCTT---TCAGTCCCAATGATTACAACCTT 39930 ||||| ||||| | ||| ||||| | ||| ||||| |||||||| ||| |||| Sbjct 1055 GAGGTACTTTGTAAGGGTACTCTTT---GCACTTGACTCAGTACCAATGATAACAGCCTT 999 Query 39931 ACGCACGTAATCTTTACGAACTACGCTAGG-AAGAAACTCCCAATACTTCATA-AGATCA 39988 || | | |||||||| |||| ||| | | ||| ||| ||||| ||| || Sbjct 998 TAACAAGAACTCTTTACGGACTAGAGAAGGTAGGTTACTGCCAGTACTT-ATAGGGAGAC 940 Query 39989 TTACGAATCATTGTAGCTGAGAT 40011 | ||| ||| ||||||| ||||| Sbjct 939 TGACGTATCTTTGTAGCAGAGAT 917 >seq450559 Length=633 Score = 98.7 bits (108), Expect = 7e-16 Identities = 167/238 (70%), Gaps = 8/238 (3%) Strand=Plus/Plus Query 58458 CTGGAGTATGAAATCAATACGATGTTCAACTCTAATGGTCAAAGTCCGTTTATTACCTTT 58517 || || |||||| | ||||| || | | ||||||| |||| |||||| |||||||| Sbjct 329 CTTGAATATGAAGTGAATACCTTGCATACCGCTAATGGCCAAACACCGTTTGTTACCTTT 388 Query 58518 GGTTTTGGTCTAGGAACTTCTTGGGAAGCACGTCTTGTACAGAAAGCAATACTAGAAGTA 58577 ||||||||| |||| || ||||| | ||| | | ||| || | || || |||| Sbjct 389 GGTTTTGGTTTAGGCGTGTCGTGGGAGTCGCGTTTAATTCAGCAATCGATGTTAACAGTA 448 Query 58578 CGTATGGATGGTTTGGGTATCAAT---AAACGTACAGCTATCTTCCCTAAACTGGTATTT 58634 ||||||| ||||| |||| ||| ||| ||||| |||| || ||| |||| ||| Sbjct 449 CGTATGGCGGGTTTAGGTAAAAATCGCAAA---ACAGCAGTCTTTCCAAAATTGGTGTTT 505 Query 58635 GTTTTGCGTGAGGGCGT-AAACATGAAACCTGGTGATGTTAACTATGATATCAAGAAG 58691 | | || ||||| || ||| ||| | ||||| ||| |||||||| || ||| Sbjct 506 GCCATTAAAGATGGCGTGAATCAT-AAAGCGACTGATGCTAATTATGATATTAAAAAG 562 >seq484804 Length=980 Score = 87.8 bits (96), Expect = 1e-12 Identities = 245/365 (67%), Gaps = 17/365 (5%) Strand=Plus/Plus Query 51874 AATTTCTC--CACGATCGTCAATCCCTCTT---TTCAAATTATGATAGACTTTGGCTAAC 51928 ||| |||| | ||||| ||||| ||| || ||||| |||| | | ||| | | Sbjct 4 AATATCTCAGCGCGATCATCAATACCTTTTGGATTCAAGTTATCAACAATTTTTTTCAGC 63 Query 51929 TGATCAAA--TACCATACCATCAGAATTAGTCCAATGACGTCCTTGAACACCATAGACTC 51986 || |||| ||||| ||||||| |||| ||| ||| ||||||| || || || | Sbjct 64 TGGTCAATGCTACCA--CCATCAGGCTTAGCCCATGCACGGCCTTGAATCCCGTAAACGC 121 Query 51987 GTCCCATATCATCCTCGCCTTTACG--GAATGGATTACCTAGCCAGGCAATATTTTCATT 52044 | ||||||||||| || ||||| || ||||| ||| ||||| ||| |||| ||| Sbjct 122 GCCCCATATCATCTTCACCTTTGCGGTGAATG--TTATTAAGCCAAGCATCATTTAAATT 179 Query 52045 TGCATTAGCATTCCATGTATTAACACCAATAGCGCGGAATTGTGCTGCTGAGTCGTACCC 52104 |||||||||| ||| || ||| ||| | || || | || || ||| || || Sbjct 180 GGCATTAGCATCCCAGGTTTTAGTACCTAGTTTACGAAAATCAGCGGCATTGTCATAACC 239 Query 52105 ACGGAGATATCCGATCATTTCCATTATTGCTTGTTTAGCAAATGCT-TTACGAGTAGTTA 52163 ||||| ||| || || | || || || || | | ||| ||| ||||| ||||||| Sbjct 240 ACGGATATAACCAATAAACTCAGCAATCGC-TGACTTGAAAAAGCTCTTACGCGTAGTTA 298 Query 52164 CTAGCGGCAGTTCTCCTGCTCCTACGTT-AAAGGTAAAGTCTGCATCAATAATGGTTAGG 52222 || || | || || || || || | ||||| || |||| ||| | ||||| Sbjct 299 TTAATGGAAACTCGTTAGCACCAACATTGTATTGTAAA-TCAGCATTAATGACGGTTAAA 357 Query 52223 CAACG 52227 ||||| Sbjct 358 CAACG 362 >seq508595 Length=419 Score = 86.0 bits (94), Expect = 5e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 29736 TGGTGCGGGATACGAGAGTCGAACTCGTGTCTACTGGTTGGAAGCCAGTTATTCTAGCCA 29795 |||||||| || |||| |||||||| |||||||| |||||||||||||||||| ||| Sbjct 354 TGGTGCGGAATTAGAGATTCGAACTCTAATCTACTGGGTGGAAGCCAGTTATTCTA-CCA 296 Query 29796 CTGAACTAATCACGCAT 29812 |||||||||| ||||| Sbjct 295 TTGAACTAATCCCGCAT 279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362911928372502