Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq120923 159 5e-34
seq300823 154 2e-32
seq141700 111 2e-19
seq436221 87.8 3e-12
seq220228 87.8 3e-12
>seq120923
Length=5298
Score = 159 bits (176), Expect = 5e-34
Identities = 193/262 (74%), Gaps = 3/262 (1%)
Strand=Plus/Minus
Query 8289 GGAACGCGGCCAACGGACAC---CCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTG 8345
|||| | ||||| ||||| |||| |||||| | || || || ||| | | |
Sbjct 4209 GGAAGGAGGCCACGGGACAGGGGCCCTGCACGTTGTTGCACACGAGCCTCTGCAGTGAGG 4150
Query 8346 CGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCG 8405
| | |||| ||| |||| |||||| ||| |||||||||||||||||||||||| |||
Sbjct 4149 CCGTGTTGATGATGTCGAATCCCACGCTTCCTCCGAAGGTGCTGGGCTTCCAGTACTCCG 4090
Query 8406 GGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAA 8465
| ||||||||| |||| ||| | || ||||||||| | || ||||||| ||| | |
Sbjct 4089 GTGAGCAGATGGCGTTTCCCAACAAACCCTTGAGGGAGTAAGGGGCCCCCATCTCCACCA 4030
Query 8466 TGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCT 8525
|| |||| |||||||||||||| || | |||||| || | | | || | ||| ||||
Sbjct 4029 TGGTCTCGCCGAAGATGGCGTTAGGCCTGGGCTTCTCTATGAGCAGGCCCGGGTAGAGCT 3970
Query 8526 CCACAGCCTCGACGTCTCCGTA 8547
|||| || || |||| ||||||
Sbjct 3969 CCACGGCGTCCACGTGTCCGTA 3948
Score = 150 bits (166), Expect = 3e-31
Identities = 188/256 (73%), Gaps = 4/256 (2%)
Strand=Plus/Minus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| || || | |||||| || ||||||||||||||| |||||| ||| || |||||
Sbjct 2074 TCACCAATCAGGATGAGCCGTGTGGTCTGGAACAGTCTCTCGTCGTCCCAGTCGGGATGC 2015
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
| | ||||| || |||||||||| |||||| |||| |||||||| ||||||||||||
Sbjct 2014 ACCTCCTTCAGCACGTCGCACACCCGGTTGTGCTCCCGCAGCCAGATGGTGGCGTACATC 1955
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411
|| || || || |||||||| |||||||| || || || || | || ||| ||
Sbjct 1954 ATCAGACCCGGGACCAGGCCGAAAGCCTCGTGGCCCACGGCGAAGCGGTGAGATTCAGGG 1895
Query 9412 ACTTCGGGAGGATAGATCATGT--GCACCTGGACGTCTTTGACCGAGGGGGGATACATTT 9469
|| | ||||| |||||||| | || || || || || |||| ||||| |||| |
Sbjct 1894 ACGTGAGGAGGGTAGATCATATCAGCGCC--CACTTCCTTTACCGTCGGGGGGTACACCT 1837
Query 9470 CACCGTCAATCATCTG 9485
| |||| || |||||
Sbjct 1836 CTCCGTTCATGATCTG 1821
Score = 89.7 bits (98), Expect = 7e-13
Identities = 198/296 (67%), Gaps = 6/296 (2%)
Strand=Plus/Minus
Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003
||||| || || || | || || ||||| || || || || ||| | |||||||| |
Sbjct 3073 CTTACCCGTCCAGCGACCTGCTTGGTGAATGACTCCACCAGGTGGTTGATGCCGTGCTCC 3014
Query 9004 ATGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTTTGTTTTATCAATCTCA 9063
| | | || ||||| |||| || | ||||| || | |||| || || |
Sbjct 3013 GTCACCACAGACGTGTTGAAGACAAACTGTTTGTAGTTGTAATCGGTTTCCTCGATGTGG 2954
Query 9064 AATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9123
|| | || ||||| || | |||||||| |||| |||| |||||||| | || ||
Sbjct 2953 AAGGTGTCGGGCATCAGCGGGTGCCAGTGGTACAGGGTGTTGAACTCGGAGGAGATGCGG 2894
Query 9124 TTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATGG 9183
|| |||||||||||| |||||||| ||||| | ||| |||| || | |
Sbjct 2893 TTCTGGTACTGGAACTGCTGGTTGAAGAGCAGCTCGGGGTCGAACTTGAGCTTGAAGTTG 2834
Query 9184 TAGCCGCTGAGCTGCTGAACGTATTGC---GTCACGATAATGTTGATGGTTTCCCC 9236
|||||||| || ||||| ||||| | | ||||| || |||||||| || ||
Sbjct 2833 TAGCCGCTCAGATGCTGCACGTAGTCCTCGATCACG---ATCTTGATGGTCTCACC 2781
>seq300823
Length=615
Score = 154 bits (170), Expect = 2e-32
Identities = 184/250 (74%), Gaps = 0/250 (0%)
Strand=Plus/Minus
Query 8301 ACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCC 8360
||||||||| |||| |||| ||| || || | | ||| || | ||||||||
Sbjct 293 ACGGACACCACTTGGTGTTGGCACACACCAGTTTCCTCAAAGTGGCCGTGTTGACGATGT 234
Query 8361 CGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGT 8420
|||| ||| || || ||||||||||| |||||||||||| | |||||||||||| ||
Sbjct 233 CGAAGCCCTTTTCCCCCCCGAAGGTGCTCGGCTTCCAGTACACAGGGGAGCAGATGGGGT 174
Query 8421 TCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGA 8480
| ||| |||||||| | |||||| |||||||||| ||| | |||||||| || || |
Sbjct 173 TTCCCAGCAGGCCTTTCAAGGAGAAGGGAGCCCCCATCTCCACCATGCTCTCCCCAAATA 114
Query 8481 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGT 8540
| || ||||| | || |||| || || |||| ||| | ||||| ||| |||| ||
Sbjct 113 TACTGTCAGGACGAGCTTTCTCCAGCAGGACTCCGACGTAAAACTCCAGAGCATCGATGT 54
Query 8541 CTCCGTAAAG 8550
| ||||| ||
Sbjct 53 CCCCGTAGAG 44
>seq141700
Length=1035
Score = 111 bits (122), Expect = 2e-19
Identities = 157/218 (72%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| ||||| |||||||| | ||||||||||| || |||||||| ||| ||||||
Sbjct 294 TCACCGATGATGATGAGCCTGGTGGTCTGGAAGAGCTGCTCGTCGTCCCAGGTGGGATGT 235
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
|| ||||| || || ||||| |||||||| ||||| ||||| | |||| ||||||
Sbjct 234 TCGGCCTTCAGGACGTCACACACTCTGTTGTGCTCCCTCAGCCACACGGTGGAGTACATG 175
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGG- 9410
|||| || || | |||||| ||| ||||||| ||||||||| || | | |
Sbjct 174 GTGAGACCCGGCAGGCTGCCAAACAGCTCCTGACCGATCGCCAGACGC-TGCTCAGGAGG 116
Query 9411 --CACTTCGGGAGGATAGATCATGTGCACCTGGACGTC 9446
||||| ||| |||| ||||||||| |||| ||
Sbjct 115 AACACTT--TCAGGGTAGACCATGTGCACGGGGACCTC 80
>seq436221
Length=551
Score = 87.8 bits (96), Expect = 3e-12
Identities = 123/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434
|| ||||||||||||||||||||||| || || || | | ||| ||| || ||
Sbjct 493 CCTCCGAAGGTGCTGGGCTTCCAGTAATTTGGAGAACATAAGGGGTTTCCCAGAAGCCCC 434
Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494
||||||||||| || || |||| ||| | |||||||| || || |||||||| | ||
Sbjct 433 TTGAGGGAGAAGGGGGCACCCATCTCCACCATGCTCTCTCCAAATATGGCGTTCTGTCGT 374
Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTA 8547
| | |||| || || |||| || | || | ||| |||| || |||||
Sbjct 373 GTTCTCTCCAACATCAAGCCGGGATAAAATTCAAGAGCATCGATATCCCCGTA 321
>seq220228
Length=510
Score = 87.8 bits (96), Expect = 3e-12
Identities = 123/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434
|| ||||||||||||||||||||||| || || || | | ||| ||| || ||
Sbjct 452 CCTCCGAAGGTGCTGGGCTTCCAGTAATTTGGAGAACATAAGGGGTTTCCCAGAAGCCCC 393
Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494
||||||||||| || || |||| ||| | |||||||| || || |||||||| | ||
Sbjct 392 TTGAGGGAGAAGGGGGCACCCATCTCCACCATGCTCTCTCCAAATATGGCGTTCTGTCGT 333
Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTA 8547
| | |||| || || |||| || | || | ||| |||| || |||||
Sbjct 332 GTTCTCTCCAACATCAAGCCGGGATAAAATTCAAGAGCATCGATATCCCCGTA 280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712167797598080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |