Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq120923 159 5e-34 seq300823 154 2e-32 seq141700 111 2e-19 seq436221 87.8 3e-12 seq220228 87.8 3e-12 >seq120923 Length=5298 Score = 159 bits (176), Expect = 5e-34 Identities = 193/262 (74%), Gaps = 3/262 (1%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACAC---CCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTG 8345 |||| | ||||| ||||| |||| |||||| | || || || ||| | | | Sbjct 4209 GGAAGGAGGCCACGGGACAGGGGCCCTGCACGTTGTTGCACACGAGCCTCTGCAGTGAGG 4150 Query 8346 CGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCG 8405 | | |||| ||| |||| |||||| ||| |||||||||||||||||||||||| ||| Sbjct 4149 CCGTGTTGATGATGTCGAATCCCACGCTTCCTCCGAAGGTGCTGGGCTTCCAGTACTCCG 4090 Query 8406 GGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAA 8465 | ||||||||| |||| ||| | || ||||||||| | || ||||||| ||| | | Sbjct 4089 GTGAGCAGATGGCGTTTCCCAACAAACCCTTGAGGGAGTAAGGGGCCCCCATCTCCACCA 4030 Query 8466 TGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCT 8525 || |||| |||||||||||||| || | |||||| || | | | || | ||| |||| Sbjct 4029 TGGTCTCGCCGAAGATGGCGTTAGGCCTGGGCTTCTCTATGAGCAGGCCCGGGTAGAGCT 3970 Query 8526 CCACAGCCTCGACGTCTCCGTA 8547 |||| || || |||| |||||| Sbjct 3969 CCACGGCGTCCACGTGTCCGTA 3948 Score = 150 bits (166), Expect = 3e-31 Identities = 188/256 (73%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| || ||||||||||||||| |||||| ||| || ||||| Sbjct 2074 TCACCAATCAGGATGAGCCGTGTGGTCTGGAACAGTCTCTCGTCGTCCCAGTCGGGATGC 2015 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 | | ||||| || |||||||||| |||||| |||| |||||||| |||||||||||| Sbjct 2014 ACCTCCTTCAGCACGTCGCACACCCGGTTGTGCTCCCGCAGCCAGATGGTGGCGTACATC 1955 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 || || || || |||||||| |||||||| || || || || | || ||| || Sbjct 1954 ATCAGACCCGGGACCAGGCCGAAAGCCTCGTGGCCCACGGCGAAGCGGTGAGATTCAGGG 1895 Query 9412 ACTTCGGGAGGATAGATCATGT--GCACCTGGACGTCTTTGACCGAGGGGGGATACATTT 9469 || | ||||| |||||||| | || || || || || |||| ||||| |||| | Sbjct 1894 ACGTGAGGAGGGTAGATCATATCAGCGCC--CACTTCCTTTACCGTCGGGGGGTACACCT 1837 Query 9470 CACCGTCAATCATCTG 9485 | |||| || ||||| Sbjct 1836 CTCCGTTCATGATCTG 1821 Score = 89.7 bits (98), Expect = 7e-13 Identities = 198/296 (67%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| || || || | || || ||||| || || || || ||| | |||||||| | Sbjct 3073 CTTACCCGTCCAGCGACCTGCTTGGTGAATGACTCCACCAGGTGGTTGATGCCGTGCTCC 3014 Query 9004 ATGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTTTGTTTTATCAATCTCA 9063 | | | || ||||| |||| || | ||||| || | |||| || || | Sbjct 3013 GTCACCACAGACGTGTTGAAGACAAACTGTTTGTAGTTGTAATCGGTTTCCTCGATGTGG 2954 Query 9064 AATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9123 || | || ||||| || | |||||||| |||| |||| |||||||| | || || Sbjct 2953 AAGGTGTCGGGCATCAGCGGGTGCCAGTGGTACAGGGTGTTGAACTCGGAGGAGATGCGG 2894 Query 9124 TTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATGG 9183 || |||||||||||| |||||||| ||||| | ||| |||| || | | Sbjct 2893 TTCTGGTACTGGAACTGCTGGTTGAAGAGCAGCTCGGGGTCGAACTTGAGCTTGAAGTTG 2834 Query 9184 TAGCCGCTGAGCTGCTGAACGTATTGC---GTCACGATAATGTTGATGGTTTCCCC 9236 |||||||| || ||||| ||||| | | ||||| || |||||||| || || Sbjct 2833 TAGCCGCTCAGATGCTGCACGTAGTCCTCGATCACG---ATCTTGATGGTCTCACC 2781 >seq300823 Length=615 Score = 154 bits (170), Expect = 2e-32 Identities = 184/250 (74%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 8301 ACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCC 8360 ||||||||| |||| |||| ||| || || | | ||| || | |||||||| Sbjct 293 ACGGACACCACTTGGTGTTGGCACACACCAGTTTCCTCAAAGTGGCCGTGTTGACGATGT 234 Query 8361 CGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGT 8420 |||| ||| || || ||||||||||| |||||||||||| | |||||||||||| || Sbjct 233 CGAAGCCCTTTTCCCCCCCGAAGGTGCTCGGCTTCCAGTACACAGGGGAGCAGATGGGGT 174 Query 8421 TCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGA 8480 | ||| |||||||| | |||||| |||||||||| ||| | |||||||| || || | Sbjct 173 TTCCCAGCAGGCCTTTCAAGGAGAAGGGAGCCCCCATCTCCACCATGCTCTCCCCAAATA 114 Query 8481 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGT 8540 | || ||||| | || |||| || || |||| ||| | ||||| ||| |||| || Sbjct 113 TACTGTCAGGACGAGCTTTCTCCAGCAGGACTCCGACGTAAAACTCCAGAGCATCGATGT 54 Query 8541 CTCCGTAAAG 8550 | ||||| || Sbjct 53 CCCCGTAGAG 44 >seq141700 Length=1035 Score = 111 bits (122), Expect = 2e-19 Identities = 157/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| |||||||| | ||||||||||| || |||||||| ||| |||||| Sbjct 294 TCACCGATGATGATGAGCCTGGTGGTCTGGAAGAGCTGCTCGTCGTCCCAGGTGGGATGT 235 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| || || ||||| |||||||| ||||| ||||| | |||| |||||| Sbjct 234 TCGGCCTTCAGGACGTCACACACTCTGTTGTGCTCCCTCAGCCACACGGTGGAGTACATG 175 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGG- 9410 |||| || || | |||||| ||| ||||||| ||||||||| || | | | Sbjct 174 GTGAGACCCGGCAGGCTGCCAAACAGCTCCTGACCGATCGCCAGACGC-TGCTCAGGAGG 116 Query 9411 --CACTTCGGGAGGATAGATCATGTGCACCTGGACGTC 9446 ||||| ||| |||| ||||||||| |||| || Sbjct 115 AACACTT--TCAGGGTAGACCATGTGCACGGGGACCTC 80 >seq436221 Length=551 Score = 87.8 bits (96), Expect = 3e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || ||||||||||||||||||||||| || || || | | ||| ||| || || Sbjct 493 CCTCCGAAGGTGCTGGGCTTCCAGTAATTTGGAGAACATAAGGGGTTTCCCAGAAGCCCC 434 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 ||||||||||| || || |||| ||| | |||||||| || || |||||||| | || Sbjct 433 TTGAGGGAGAAGGGGGCACCCATCTCCACCATGCTCTCTCCAAATATGGCGTTCTGTCGT 374 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTA 8547 | | |||| || || |||| || | || | ||| |||| || ||||| Sbjct 373 GTTCTCTCCAACATCAAGCCGGGATAAAATTCAAGAGCATCGATATCCCCGTA 321 >seq220228 Length=510 Score = 87.8 bits (96), Expect = 3e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || ||||||||||||||||||||||| || || || | | ||| ||| || || Sbjct 452 CCTCCGAAGGTGCTGGGCTTCCAGTAATTTGGAGAACATAAGGGGTTTCCCAGAAGCCCC 393 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 ||||||||||| || || |||| ||| | |||||||| || || |||||||| | || Sbjct 392 TTGAGGGAGAAGGGGGCACCCATCTCCACCATGCTCTCTCCAAATATGGCGTTCTGTCGT 333 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTA 8547 | | |||| || || |||| || | || | ||| |||| || ||||| Sbjct 332 GTTCTCTCCAACATCAAGCCGGGATAAAATTCAAGAGCATCGATATCCCCGTA 280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712167797598080