Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq152718 143 6e-29
seq6427 125 2e-23
seq59939 111 4e-19
>seq152718
Length=3078
Score = 143 bits (158), Expect = 6e-29
Identities = 163/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || ||||| || || || || || || ||||| || ||||| ||| | |||
Sbjct 2370 CAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACTCTGGAGGTTGAACCCAGCGAC 2311
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||| |||||| ||||||||||| || ||||| |||||| | || ||| |
Sbjct 2310 ACCATTGAGAATGTCAAAGTTAAGATTCAGGATAAGGAAGGCATCCCTTCTGAACAGTAC 2251
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| || ||||| ||||| || ||||| |||||||| | ||||| |||| || | | ||
Sbjct 2250 AGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACTCTCTCCGACTACAGCATC 2191
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| ||||| || || || |||||||| ||| | || |||
Sbjct 2190 CAGAAAGAGTCCACCCTCCATCTTGTCTTGCGGCTGAGA 2152
Score = 114 bits (126), Expect = 3e-20
Identities = 151/208 (73%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 177922 TCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG 177981
|||| || || ||||| || || | | || || | ||| || ||| | || | |
Sbjct 2144 TCCAGATCTTTGTGAAGACCCTGATTGCTAAGACCACCACTCTTGAGATTGAGTCCAGTG 2085
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||| |||||| | ||||||||||| || |||| |||| ||| || ||||
Sbjct 2084 ACACCATCGAGAATGTCAAATACAAGATTCAGGATAAGAAAGGCATCCATCCAGAGCAGC 2025
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||||| || |||||||| || ||||| |||||| |||| || |||
Sbjct 2024 AGAGCCTGATCTTCGAGGGCAAACAGCTGGATGATGGCCGGACTCCCTCCGACTACAACA 1965
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
| |||| ||||| || || ||||| ||
Sbjct 1964 GCAAAAAGGAATCCACCCT-CATCTCGT 1938
>seq6427
Length=3314
Score = 125 bits (138), Expect = 2e-23
Identities = 143/190 (75%), Gaps = 4/190 (2%)
Strand=Plus/Minus
Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCA 177999
||||| || || || |||||||| ||||| || || ||| |||||||||| || ||||
Sbjct 3313 CTCACGGGCAAGACCATCACCCTGGAGGTTGA--GCCCAGCGACACCATCGAAAATGTCA 3256
Query 178000 AACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCG 178059
| ||||| |||||||| ||||| || || || || ||||| | || ||||| ||||
Sbjct 3255 AGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAGAGGCTGATCTTTGCCG 3196
Query 178060 GAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACAC 178119
| || ||||| |||||||| | || || |||| || ||| |||| || || || || |
Sbjct 3195 GCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCC 3136
Query 178120 TGCATCTTGT 178129
| ||||||||
Sbjct 3135 TCCATCTTGT 3126
>seq59939
Length=800
Score = 111 bits (122), Expect = 4e-19
Identities = 120/157 (76%), Gaps = 4/157 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || || ||||| || ||||| || || || |||||||||||||| | ||| | |
Sbjct 162 CAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTTG--AGCCTAGTG 105
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|||| ||||| || ||||| ||||| |||||||| ||||| || || || || ||||
Sbjct 104 ACACAATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGC 45
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078
| | || ||||| |||||||| ||||| ||||||||
Sbjct 44 AGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGG 8
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1195626484601388
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |