Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq152718 143 6e-29 seq6427 125 2e-23 seq59939 111 4e-19 >seq152718 Length=3078 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || ||||| || ||||| ||| | ||| Sbjct 2370 CAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACTCTGGAGGTTGAACCCAGCGAC 2311 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| |||||| ||||||||||| || ||||| |||||| | || ||| | Sbjct 2310 ACCATTGAGAATGTCAAAGTTAAGATTCAGGATAAGGAAGGCATCCCTTCTGAACAGTAC 2251 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| ||||| || ||||| |||||||| | ||||| |||| || | | || Sbjct 2250 AGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACTCTCTCCGACTACAGCATC 2191 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || ||||| || || || |||||||| ||| | || ||| Sbjct 2190 CAGAAAGAGTCCACCCTCCATCTTGTCTTGCGGCTGAGA 2152 Score = 114 bits (126), Expect = 3e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177922 TCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG 177981 |||| || || ||||| || || | | || || | ||| || ||| | || | | Sbjct 2144 TCCAGATCTTTGTGAAGACCCTGATTGCTAAGACCACCACTCTTGAGATTGAGTCCAGTG 2085 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| |||||| | ||||||||||| || |||| |||| ||| || |||| Sbjct 2084 ACACCATCGAGAATGTCAAATACAAGATTCAGGATAAGAAAGGCATCCATCCAGAGCAGC 2025 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||||| || |||||||| || ||||| |||||| |||| || ||| Sbjct 2024 AGAGCCTGATCTTCGAGGGCAAACAGCTGGATGATGGCCGGACTCCCTCCGACTACAACA 1965 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | |||| ||||| || || ||||| || Sbjct 1964 GCAAAAAGGAATCCACCCT-CATCTCGT 1938 >seq6427 Length=3314 Score = 125 bits (138), Expect = 2e-23 Identities = 143/190 (75%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCA 177999 ||||| || || || |||||||| ||||| || || ||| |||||||||| || |||| Sbjct 3313 CTCACGGGCAAGACCATCACCCTGGAGGTTGA--GCCCAGCGACACCATCGAAAATGTCA 3256 Query 178000 AACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCG 178059 | ||||| |||||||| ||||| || || || || ||||| | || ||||| |||| Sbjct 3255 AGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAGAGGCTGATCTTTGCCG 3196 Query 178060 GAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACAC 178119 | || ||||| |||||||| | || || |||| || ||| |||| || || || || | Sbjct 3195 GCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCC 3136 Query 178120 TGCATCTTGT 178129 | |||||||| Sbjct 3135 TCCATCTTGT 3126 >seq59939 Length=800 Score = 111 bits (122), Expect = 4e-19 Identities = 120/157 (76%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || ||||| || || || |||||||||||||| | ||| | | Sbjct 162 CAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTTG--AGCCTAGTG 105 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||| || ||||| ||||| |||||||| ||||| || || || || |||| Sbjct 104 ACACAATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGC 45 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 | | || ||||| |||||||| ||||| |||||||| Sbjct 44 AGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGG 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1195626484601388