Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq152719 122 8e-23
seq6427 122 8e-23
seq152718 104 2e-17
seq59938 86.0 6e-12
>seq152719
Length=2073
Score = 122 bits (134), Expect = 8e-23
Identities = 160/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
|| || | ||| ||||| || ||| ||| ||||| ||||| ||||||||||| |||||
Sbjct 53 AGGCGGAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGG 112
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
|||| || |||||||||||||| || ||||| | ||| || || | || | || ||||
Sbjct 113 CCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCCTCC 172
Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823
|| ||| || | || |||| || | | |||||||| | || ||||||| ||
Sbjct 173 TTATCC-TGGATCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGT 231
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| | ||||| ||||| ||||| || || ||||||||
Sbjct 232 GATGGACTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 270
Score = 104 bits (114), Expect = 2e-17
Identities = 153/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712
||| ||||| | ||| || ||||| |||||||| || || | |||||| | || ||
Sbjct 517 CACAAGATGGATGGTGGATTCTTTCTGGATGTTATAATCTGACATGGTGCGACCATCTTC 576
Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772
|||||||||||||| || ||||| | ||| || || | || | || |||||| ||| |
Sbjct 577 CAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTATCC-T 635
Query 41773 GATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831
| | || |||| || | | |||||||| | || ||||||| || || || |
Sbjct 636 GGATCTTAGCTTTTACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATAGTCT 695
Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|||| ||||| ||||| || || |||||||| ||
Sbjct 696 TACCAGTCAGGGTCTTCACAAAGATCTGCATCTT 729
Score = 91.5 bits (100), Expect = 1e-13
Identities = 153/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
|| || || |||||||| | | ||| ||||| ||||| ||||||||||| |||||
Sbjct 281 AGCCGCAAGACCAGATGAATGCAGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGG 340
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
|||| || |||||||||||||| || || || | ||| ||||| | || | || |||
Sbjct 341 CCGTCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGGATGCCTTCC 400
Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823
|| ||| || | || |||| || | | |||||| | | || ||| ||| ||
Sbjct 401 TTATCC-TGGATCTTAGCTTTGACATTCTCAATGGTGTCGTTGGGTTCAACCACCAGAGT 459
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || || || ||||| || || ||||| ||
Sbjct 460 GATAGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGAAT 498
>seq6427
Length=3314
Score = 122 bits (134), Expect = 8e-23
Identities = 153/208 (74%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| | ||||| | || ||||| || ||| ||||||||| ||||| |||||||||
Sbjct 3108 CCGCCTCTCAGACGGAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3167
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || |||||||||||||| || ||||| | ||| || || | ||||
Sbjct 3168 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3227
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| || ||||||||| ||| || ||| || || | |||||||| | ||| |
Sbjct 3228 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCG--ATGGTGTCGCTGGGCTCAA 3285
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAG 41841
|||||| || || || || ||||| ||
Sbjct 3286 CCTCCAGGGTGATGGTCTTGCCCGTGAG 3313
>seq152718
Length=3078
Score = 104 bits (114), Expect = 2e-17
Identities = 156/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
|| || || || ||||| || ||| ||| ||||| ||| | ||||||||||| |||||
Sbjct 2156 AGCCGCAAGACAAGATGGAGGGTGGACTCTTTCTGGATGCTGTAGTCGGAGAGAGTGCGA 2215
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || |||||||||||||| || ||||| | | || || | || | || |||
Sbjct 2216 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTGTACTGTTCAGAAGGGATGCCTTCC 2275
Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823
|| ||| ||| | || ||| || | | |||||||| | || ||||||| ||
Sbjct 2276 TTATCC-TGAATCTTAACTTTGACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGT 2334
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || ||||| ||||| ||||| || || ||||||||
Sbjct 2335 GATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 2373
>seq59938
Length=2926
Score = 86.0 bits (94), Expect = 6e-12
Identities = 139/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|||||| | || ||| ||||||||| ||||| || ||||||||||| | || ||
Sbjct 2730 ACCAGACGGAGGGTGGACTCCTTCTGGATGTTGTATA--GAGAGGGTGCGGCCATCTTCC 2787
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||||||||| || ||||| | ||| || || | ||||| || ||||||||| |
Sbjct 2788 GAATGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGG 2847
Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833
|| || ||| | | |||||||| | ||| ||||||| || || || ||
Sbjct 2848 ATCTTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTG 2907
Query 41834 CCCGTCAGCGTCTTTACGA 41852
|| || || ||||| ||||
Sbjct 2908 CCAGTGAGGGTCTTGACGA 2926
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 459267229042400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |