Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq152719 122 8e-23 seq6427 122 8e-23 seq152718 104 2e-17 seq59938 86.0 6e-12 >seq152719 Length=2073 Score = 122 bits (134), Expect = 8e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| ||||| || ||| ||| ||||| ||||| ||||||||||| ||||| Sbjct 53 AGGCGGAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGG 112 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||||||||| || ||||| | ||| || || | || | || |||| Sbjct 113 CCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCCTCC 172 Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 || ||| || | || |||| || | | |||||||| | || ||||||| || Sbjct 173 TTATCC-TGGATCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGT 231 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||||| ||||| ||||| || || |||||||| Sbjct 232 GATGGACTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 270 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||| ||||| | ||| || ||||| |||||||| || || | |||||| | || || Sbjct 517 CACAAGATGGATGGTGGATTCTTTCTGGATGTTATAATCTGACATGGTGCGACCATCTTC 576 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 |||||||||||||| || ||||| | ||| || || | || | || |||||| ||| | Sbjct 577 CAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTATCC-T 635 Query 41773 GATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 | | || |||| || | | |||||||| | || ||||||| || || || | Sbjct 636 GGATCTTAGCTTTTACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATAGTCT 695 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| ||||| ||||| || || |||||||| || Sbjct 696 TACCAGTCAGGGTCTTCACAAAGATCTGCATCTT 729 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || || |||||||| | | ||| ||||| ||||| ||||||||||| ||||| Sbjct 281 AGCCGCAAGACCAGATGAATGCAGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGG 340 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||||||||| || || || | ||| ||||| | || | || ||| Sbjct 341 CCGTCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGGATGCCTTCC 400 Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 || ||| || | || |||| || | | |||||| | | || ||| ||| || Sbjct 401 TTATCC-TGGATCTTAGCTTTGACATTCTCAATGGTGTCGTTGGGTTCAACCACCAGAGT 459 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || ||||| || || ||||| || Sbjct 460 GATAGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGAAT 498 >seq6427 Length=3314 Score = 122 bits (134), Expect = 8e-23 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| | ||||| | || ||||| || ||| ||||||||| ||||| ||||||||| Sbjct 3108 CCGCCTCTCAGACGGAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3167 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||||||||| || ||||| | ||| || || | |||| Sbjct 3168 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3227 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || ||||||||| ||| || ||| || || | |||||||| | ||| | Sbjct 3228 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCG--ATGGTGTCGCTGGGCTCAA 3285 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAG 41841 |||||| || || || || ||||| || Sbjct 3286 CCTCCAGGGTGATGGTCTTGCCCGTGAG 3313 >seq152718 Length=3078 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || || || ||||| || ||| ||| ||||| ||| | ||||||||||| ||||| Sbjct 2156 AGCCGCAAGACAAGATGGAGGGTGGACTCTTTCTGGATGCTGTAGTCGGAGAGAGTGCGA 2215 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || ||||| | | || || | || | || ||| Sbjct 2216 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTGTACTGTTCAGAAGGGATGCCTTCC 2275 Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 || ||| ||| | || ||| || | | |||||||| | || ||||||| || Sbjct 2276 TTATCC-TGAATCTTAACTTTGACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGT 2334 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || ||||| ||||| ||||| || || |||||||| Sbjct 2335 GATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 2373 >seq59938 Length=2926 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||||| | || ||| ||||||||| ||||| || ||||||||||| | || || Sbjct 2730 ACCAGACGGAGGGTGGACTCCTTCTGGATGTTGTATA--GAGAGGGTGCGGCCATCTTCC 2787 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || ||||| | ||| || || | ||||| || ||||||||| | Sbjct 2788 GAATGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGG 2847 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | |||||||| | ||| ||||||| || || || || Sbjct 2848 ATCTTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTG 2907 Query 41834 CCCGTCAGCGTCTTTACGA 41852 || || || ||||| |||| Sbjct 2908 CCAGTGAGGGTCTTGACGA 2926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 459267229042400