Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq117 410 1e-109 seq64 105 8e-18 >seq117 Length=2128962 Score = 410 bits (454), Expect = 1e-109 Identities = 1264/1946 (65%), Gaps = 27/1946 (1%) Strand=Plus/Plus Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146 ||||| ||||| |||||||| | ||||| || | || | || || || || || Sbjct 876794 TTCTTCATCTCCTCATTCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTG 876853 Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206 || | ||||| || || || | || | || ||||| || || || || || | || Sbjct 876854 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 876913 Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 53266 | ||||| || || |||| || || || || || || || ||||| || | || || Sbjct 876914 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGCAGC 876973 Query 53267 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 53326 | || || || | || | | | ||| || || || || | | ||| | ||| || Sbjct 876974 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 877033 Query 53327 TCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGATC 53384 |||| || | | | || ||||| || ||||| | ||| | Sbjct 877034 TCCGTTGG--CGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGC 877091 Query 53385 CTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCAC 53444 || |||| || || || | || || | || | || || ||||| || || || Sbjct 877092 CTTCATACGTCTCATAGGTGCCGAGCTCGGCGGCCAACTCGCAGCTCGCTTCCAAAGCGG 877151 Query 53445 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 53504 | ||||| || || || ||||||| | || || ||| || || |||| ||||| | Sbjct 877152 CATAATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAAAGG 877211 Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564 ||||| | || || || || || || ||||| || || || || || || || || | Sbjct 877212 GATAACGCATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGT 877271 Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624 | | | | || || | |||||| | || || || || || || |||| || | Sbjct 877272 GCCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGT 877331 Query 53625 TGAGGTTTCTGACAATTACTTTGACCAC--ATCCTTCAGTTTGAGAAAATCA-AATT--G 53679 | | ||| ||||||||||||||| ||| || | || ||| ||| ||| || | | Sbjct 877332 TCAAGTTCCTGACAATTACTTTGGTCACGGATGC--CAATTTTTTAAAGTCATAAGTCCG 877389 Query 53680 TCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATT 53739 || | || ||||||| | || | ||| |||||||| ||||| || ||||| | Sbjct 877390 CTCAGGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTC 877449 Query 53740 AGCATCCGCATATTGTATT-----ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCT 53794 | | | || |||| | || || ||||| || || || ||||||||||| || Sbjct 877450 --CTTGC---TAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCC 877504 Query 53795 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCA 53854 | ||| || || || ||||| |||| || ||||| || || | ||| | ||||| || Sbjct 877505 AGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCG 877564 Query 53855 GTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTG 53914 ||||| |||| || || || || || | ||| | ||||||| | | | || Sbjct 877565 GTTTCTGTCTGCGACTCGATGATTGCATACCAAAGCTGCTGAGCCTTCACCACACGCTTC 877624 Query 53915 TATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTG 53974 ||| || | || ||| || || | | ||||||||| || ||||| | Sbjct 877625 ACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCA 877684 Query 53975 TCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGT 54034 |||| || || || || |||||||||||| ||||| ||| ||| | || ||| || Sbjct 877685 TCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGC 877744 Query 54035 TTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCG 54094 ||||| ||||| ||||| ||||| || || || || || |||| || || ||||| Sbjct 877745 TTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCC 877804 Query 54095 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 54154 ||||| || ||||| || || || ||||| | | | ||| | ||||| || |||| | Sbjct 877805 TTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGG 877864 Query 54155 TATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 54214 || |||| | | ||||| | |||||| || |||||||| | || | || ||||| Sbjct 877865 TACATGGCGAAGGCGCCAGGTCTTTTGTTCCCCCCCTGATCAACATAACGCGCTGTGTTG 877924 Query 54215 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 54274 || ||||| ||||||||||| | | || ||||| || ||||| |||| ||| ||| Sbjct 877925 TTGTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGGCGATGTAG 877984 Query 54275 CTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATT 54334 || || ||| | ||| || | || | || ||||| || || ||| ||||| Sbjct 877985 CTCCCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGATG 878044 Query 54335 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 54394 | ||||| | || | ||| || ||||| ||||| || || |||||| ||||| || Sbjct 878045 AGGGCGCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGC 878104 Query 54395 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 54454 || || ||||| |||| || | | | ||||| ||||| || | ||| || || ||| Sbjct 878105 AGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCG 878164 Query 54455 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCAT 54514 || || ||||| || || || || || ||||| |||||||| ||| || |||||| Sbjct 878165 TGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCGTC 878224 Query 54515 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 54574 || ||||| || || || | ||| | ||||||||| || | ||| | | ||| Sbjct 878225 CCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCCA 878284 Query 54575 TTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 54634 || || || |||| |||||| |||| ||| || || ||||| ||||||| || || Sbjct 878285 TTGATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAA 878344 Query 54635 TCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATG 54694 |||| || || || || | ||||| || || || | | ||| | || | Sbjct 878345 TCTCTGTCATAGATTATGGCCGAGTTAAGGCGGTCTTTGTTTGCAAGAACAATGTCGAGT 878404 Query 54695 GTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTA--GGATTGACATAGTTAAATA 54752 || | ||||| || |||| | || | | || | || |||| ||||| | | Sbjct 878405 GTGTCTTTCGAAATCAT-GGAGGA-GTGGCGTTTGTTCAGGGGGTTGATGTAGTTGTACA 878462 Query 54753 AATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTA 54812 |||| ||| || || || || | || || || |||||||| | || || ||||| | Sbjct 878463 GGTCCTCCATGACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAAGTTAGAGACGGCGA 878522 Query 54813 TTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGG 54872 | | || || || ||||| || || || | | || || |||||| || || || | Sbjct 878523 TGCGTGCTGCGAGGATGGCGTAGTCGGGGTACTTGGTTGTGAGAGTGGCAGCGATCTCCG 878582 Query 54873 CTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCA 54932 | | ||| ||||| | || || || || || || | || | || ||||| ||||||| Sbjct 878583 CCGCCAGCGTGTCGAGCTCCACAGTGGTGACGCCGCTGTACAAACCCTGGATGACCTTCA 878642 Query 54933 TAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT-AATA 54991 | | || | || || | | || |||| | || || || || |||| || Sbjct 878643 TCGTGATCTGGGCTGGGTCCACAAACTCCATGTTGAGTCCGTAGCA-AAGCTTCTGGATG 878701 Query 54992 CGAGATGTGATTTTATCAAACATGAC 55017 |||||||||||||| || |||||||| Sbjct 878702 CGAGATGTGATTTTGTCGAACATGAC 878727 >seq64 Length=3290765 Score = 105 bits (116), Expect = 8e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 53759 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 53818 ||||| ||||| ||||| || | |||||||| || | ||||| |||||||||||| || Sbjct 2550731 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTTTGCTGATTACTCTTTCTG 2550672 Query 53819 TTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATC 53878 || || |||||||| |||| ||| |||| ||||||||||| |||| || || || || Sbjct 2550671 TTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGCGACTCAATGATG 2550612 Query 53879 GCTTTCCA 53886 || | ||| Sbjct 2550611 GCGTACCA 2550604 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || || || || | |||||||||||||| || ||||| || || || || | ||| Sbjct 2549585 GTGCCAGCGTTGAACAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCTGACAGCAAGTTG 2549526 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || ||||| || |||| || || || | || |||||| || |||| || | ||||| | Sbjct 2549525 TAGGTCTCAATGGCTGCATCAATGTCACCTTTATGAATCCCGACTGACACTCTCATTAGC 2549466 Query 54545 ATGTGCTGAGGTC 54557 |||||||| |||| Sbjct 2549465 ATGTGCTGGGGTC 2549453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593667897881280