Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq48 129 6e-25 seq28 109 6e-19 seq80 87.8 2e-12 >seq48 Length=3648740 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || |||||| |||||||||| || || || ||||| ||||||| ||||| |||||| Sbjct 3225367 GGAGAGCGCGTGGTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCC 3225426 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| ||||| | ||||| |||||||||||||| ||| |||||||||| Sbjct 3225427 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 3225486 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 3225487 ATCAGCAGAGACGAGG 3225502 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || |||||| |||||||||| || || || ||||| ||||||| ||||| |||||| Sbjct 3235863 GGAGAGCGCGTGGTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCC 3235804 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| ||||| | ||||| |||||||||||||| ||| |||||||||| Sbjct 3235803 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 3235744 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 3235743 ATCAGCAGAGACGAGG 3235728 Score = 114 bits (126), Expect = 1e-20 Identities = 104/127 (82%), Gaps = 3/127 (2%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 ||||||| |||||||||||| | ||| ||||||| | |||| ||| | |||||| | Sbjct 3224755 AGGTGGATCTGTCCAAGGACCTGCAGC-ACTGGGATGCCATGAAGGACGAAGAGCGCTAC 3224813 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| || ||||||||||||||||||||||| ||||| ||| Sbjct 3224814 TTCATCTCCCACGTGTTGGCCTTCTTTGCCGCCAGCGACGGCATCGTCAATGAGAACCTG 3224873 Query 116804 GTCGAGC 116810 || |||| Sbjct 3224874 GT-GAGC 3224879 Score = 114 bits (126), Expect = 1e-20 Identities = 104/127 (82%), Gaps = 3/127 (2%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 ||||||| |||||||||||| | ||| ||||||| | |||| ||| | |||||| | Sbjct 3236475 AGGTGGATCTGTCCAAGGACCTGCAGC-ACTGGGATGCCATGAAGGACGAAGAGCGCTAC 3236417 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| || ||||||||||||||||||||||| ||||| ||| Sbjct 3236416 TTCATCTCCCACGTGTTGGCCTTCTTTGCCGCCAGCGACGGCATCGTCAATGAGAACCTG 3236357 Query 116804 GTCGAGC 116810 || |||| Sbjct 3236356 GT-GAGC 3236351 Score = 100 bits (110), Expect = 3e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| ||||| |||||||| | ||||| ||||| |||||||| || || Sbjct 3236274 GGTGGAGCGCTTCATGCAGGAAGTGCAGGTAACGGAGGCCCGGTGTTTCTACGGTTTCCA 3236215 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || |||||| || |||||||||||| Sbjct 3236214 GATCGCCATGGAGAACATCCACTCAGAGATGTATAGCCTGCTGATCGACACGTAC 3236160 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| ||||| |||||||| | ||||| ||||| |||||||| || || Sbjct 3224956 GGTGGAGCGCTTCATGCAGGAAGTGCAGGTAACGGAGGCCCGGTGTTTCTACGGTTTCCA 3225015 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| | || || |||||||||||| Sbjct 3225016 GATCGCCATGGAGAACATCCACTCAGAGATGTA--CAGCCTGCTGATCGACACGTAC 3225070 >seq28 Length=5070235 Score = 109 bits (120), Expect = 6e-19 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || ||||| || ||||||||| | ||||| || ||||| ||||| || |||| ||| Sbjct 3406720 GAACCTCTGCTCCGAGAGAACCCCAGGCGGTTTGTCATTTTTCCCATCCAGTACCGAGAC 3406779 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGG 116690 || ||| ||||||||| ||||| |||| || ||||||||||| |||||||||| Sbjct 3406780 ATCTGGAAGATGTACAAACAGGCCCAGGCCTCTTTCTGGACCGTGGAGGAGGTGG 3406834 >seq80 Length=2822622 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| | || |||| || ||||| |||||||| || | ||||||||| ||| Sbjct 765174 GACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGAC 765115 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||||| |||| || || || || |||| | ||||| || Sbjct 765114 TACAACATCCAGAAGGAGTCCACCCTCCACCTTGTTCTGCGTCTCAGGGGTGG 765062 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || ||||||||||| ||||| ||||||||| | || || || | Sbjct 766651 AAACATGCAGATCTTTGTGAAAACGCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCC 766592 Query 40746 CACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || ||||| | | | |||| | |||| ||||| | ||||| || ||||| ||| | | Sbjct 766591 CAGCGACACCATCGAGAACG-TGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTG 766533 Query 40805 ACCAGCAACGACTCATCT 40822 ||||||| | || |||| Sbjct 766532 ACCAGCAGAGGCTGATCT 766515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515172598423360