Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq117 111 1e-19 >seq117 Length=2128962 Score = 111 bits (122), Expect = 1e-19 Identities = 479/743 (64%), Gaps = 26/743 (3%) Strand=Plus/Plus Query 133222 GGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACG 133281 ||||||| | |||||||| || | ||| || || | | || | || ||| | | Sbjct 876849 GGTTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGG 876908 Query 133282 GTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCA 133341 |||| || ||||||||||| || ||||| || || | ||||||||||| | || Sbjct 876909 CCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACA 876968 Query 133342 CCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCC 133401 || || ||| || ||||| | ||| || || || || |||||||||| Sbjct 876969 GCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCC 877028 Query 133402 ACAGATT-GTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGCAAAATA 133460 |||| | ||||| || | ||||| | | | || || | || | ||| Sbjct 877029 ACAGGTCCGTTGG---------CGTC-TTCTC--CCACAT-GTCGT---ACTGGAGAATG 877072 Query 133461 CCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCCAGCTCG 133520 ||| | |||||||| | | |||| ||||||| ||| ||||| |||| Sbjct 877073 CCCTTACTCACCGGCGAGCCTTCATACGTCTCATAGGTGCCGAGCTCGGCGGCCAACTCG 877132 Query 133521 CAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TGAATAGTTGACGAACCT 133579 ||||| || |||||||||||| | || || || || ||| || || ||||| | | | Sbjct 877133 CAGCTCGCTTCCAAAGCGGCATAATACATAGTCTCAAAGATCTGGAT-GTTGA-GCAGTT 877190 Query 133580 G-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCAAACCCTGT 133637 | || ||| ||| || ||| ||| || | ||| | || || || ||||| ||||| Sbjct 877191 GAGCCTCGGGGCTTTCAAAGG-GATAACGCATAAGGATGAAGGCATCAGCCAATCCCTGG 877249 Query 133638 ATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGGATAG 133697 | |||| || || || | || | || |||| | || || || ||| Sbjct 877250 ACCCCGATTCCTATCGGCCTGTGCCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAG 877309 Query 133698 TGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGTTTCAGC 133757 | ||||| |||||| | |||||| | || | ||| || | ||| |||| | || Sbjct 877310 TAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGGATGCCAAT 877369 Query 133758 AAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATACTGGCT 133817 | ||||| | ||| || | || |||| || |||||| || | | ||| Sbjct 877370 TTTTTAAAGTCATAAGTCC--GCTCAGGGGT-GACGTACATGTTGAGAGCGACAGAGGCC 877426 Query 133818 AGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCGCAGAGGTTG 133877 ||||| ||||| ||| ||||| || | |||| |||||| || | |||||||||| Sbjct 877427 AGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAGAGGTTG 877486 Query 133878 CTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCCTTGTAT 133937 ||||| ||||||||||||| ||| | || ||||| | ||||| ||| ||||| Sbjct 877487 CTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAG 877546 Query 133938 AGCATGTACGGCCCGCCGGTTTC 133960 | |||||||||| |||||||| Sbjct 877547 ACCATGTACGGCGTCCCGGTTTC 877569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433792141039312