Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq1488 116 7e-21 seq128 93.3 8e-14 seq13 93.3 8e-14 >seq1488 Length=10769 Score = 116 bits (128), Expect = 7e-21 Identities = 221/321 (69%), Gaps = 6/321 (2%) Strand=Plus/Minus Query 135621 GTGGaaaaaaaTACCCGATCCTGTTTTGCATATAGAACTTAGGAGATGGGCGGATGTTTT 135680 ||||||| | | | | || ||||| | || || || || ||| | |||| ||| | | Sbjct 8923 GTGGAAACAGAGATCTGACCCTGTGCTACACATTGAGCTAAGGCGTTGGGAAGATCTACT 8864 Query 135681 TATTATAGCGCC-CTTAACGGCAAATACGTTAGCAAAAATAGCTAATGGTATATGCGATA 135739 | | || || || ||| | | ||| || | ||| || |||| |||||| || |||| Sbjct 8863 TGTCATTGCCCCTCTTGATGCCAACAGTCTTGG-AAAGATTGCTAGTGGTATTTGTGATA 8805 Query 135740 ATTTACTGACGTCTATTGTAAGAGCCTGGGATACAAACAAACCACTCATTTTCTGTCCTG 135799 || | ||||||| | | ||||||||||||||||| | || || | ||||| |||| Sbjct 8804 ATCTGCTGACGTGTGTGGTAAGAGCCTGGGATACCAGTCGTCCTCTTCTCTTCTGCCCTG 8745 Query 135800 CAATGAATACTCTTATGTGGGAACATCCTATTACAGAAAAACA--TATAGATACGTTAAA 135857 ||||||| || ||||||| ||||||||||||| | || ||| | || | || Sbjct 8744 CAATGAACACAGCTATGTGGCTGCATCCTATTACAGCCCAGCAGGTATCCAGAC--TGAA 8687 Query 135858 ATATATGGGTTTCATAGAAATAGAATGCATAGaaaaaaaaCTAGCATGTGGAGACGTAGG 135917 | | | || | | ||||| ||| | | ||||| |||| |||||||| | ||| Sbjct 8686 AGAGTTTGGATATGTGGAAATCCCCTGCGTTGCCAAAAAGCTAGTGTGTGGAGATGAAGG 8627 Query 135918 AAATGGTGCTATGGCAGAAGT 135938 || ||||| ||||||||||| Sbjct 8626 TAAAGGTGCCATGGCAGAAGT 8606 >seq128 Length=1900342 Score = 93.3 bits (102), Expect = 8e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 51893 GAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCA 51952 |||| | |||| ||| | || ||||| || || || || |||| || || ||||||| Sbjct 1256177 GAGCTCTGTGGTGGTATTTCATCTCCAAGGGCATTGAGTATCTGGACACTGTGTTTTTCA 1256236 Query 51953 TACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGT 52012 | | |||||||||||||| ||||| | || || ||||| || ||||||| | |||| Sbjct 1256237 TCTTGAGGAAAAAATTTAACCAGGTCACCTTCCTGCACGTCTACCATCATTGCTCCATGT 1256296 Query 52013 TTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAG 52056 | || || | ||||| || || || ||| | || ||||| ||| Sbjct 1256297 TCACGCTCTGGTGGATTGGCATCAAGTGGGTGGCAGGAGGACAG 1256340 >seq13 Length=6729630 Score = 93.3 bits (102), Expect = 8e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 51885 GATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGT 51944 ||||||| || | |||| |||||| || |||||||| | || | | |||| || || Sbjct 6645497 GATAGCCTCGGCTCTTTGGTGGTACTACATCTCCAAAGGAGTGGAGTTCCTGGACACTGT 6645438 Query 51945 ATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTT 52004 ||||||||||| ||||| || || || || || || || || ||||| || ||||| | Sbjct 6645437 CTTTTTCATACTGAGGAAGAAGTTCAACCAAGTCAGCTTCCTCCACGTCTACCATCACTG 6645378 Query 52005 TACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 || ||||| | || | ||||| || || |||||| || | || || || Sbjct 6645377 CACCATGTTCATCCTCTGGTGGATTGGAATCAAATGGGTTCCCGGTGGACA 6645327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923113296849440