Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq35 291 6e-74 >seq35 Length=4467292 Score = 291 bits (322), Expect = 6e-74 Identities = 616/909 (68%), Gaps = 24/909 (3%) Strand=Plus/Minus Query 107676 TTCAT-ACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGT 107734 ||||| |||| ||| || ||| | |||||| ||| ||||||||||| ||||| ||||| Sbjct 2934835 TTCATCACAGCTCCT-CTCAGTGAGGAAGAGAAAGATTTCCCCATTGCATACTCCATGGT 2934777 Query 107735 GGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAA 107794 | ||||||| |||||||| | ||||| ||||| || ||||| || ||||| |||||||| Sbjct 2934776 GATCCATGACAAGATTGAGATGTTTGAGCGGCTTCTACGAGCTGTTTATGCTCCTCAGAA 2934717 Query 107795 CATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGC 107854 ||| |||||||| |||||||| ||| ||| | | | |||| |||| || || Sbjct 2934716 CATTTACTGTGTACACGTGGACCAGAAATCCTCTGCATCATTCATGAAGGCTGTGGCTGC 2934657 Query 107855 CATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGC 107914 ||| ||| ||||| || ||||| || | |||||||| || | ||||| ||||| Sbjct 2934656 GATTGCTTCATGCTTTCCTAATGTGTTTGTAGCCAGTAAATTAGAAAGAGTGGTATATGC 2934597 Query 107915 CTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGT 107974 ||| |||| |||||| || || || ||||| || ||| |||| |||| | | |||| Sbjct 2934596 CTCGTGGTTCAGAGTACAGGCAGATCTGAATTGCATGAAAGATCTGCTAAATA-CTCACA 2934538 Query 107975 GCCA-TGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCG 108033 | | |||| |||| | || || || || ||||||||||||||||| || || || | Sbjct 2934537 TCAACTGGAGGTACCTGCTTAACACCTGTGGGACAGACTTCCCCATCAAAACAAACAGAG 2934478 Query 108034 AGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTT 108093 ||||||| ||| || ||| | | || || | |||||| |||||||||||||| ||| Sbjct 2934477 AGATGGTGAGGGCACTGAAGTTTCTCAATGGGAGGAACAGCATGGAGTCTGAGGTGACTT 2934418 Query 108094 CTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTA 108153 ||| | ||| ||| ||| ||| | || | | | | || || ||| ||| || Sbjct 2934417 CTGGCTGCAAGAAAGGTCGTTGGCAGTATCACCACAA--TGTCACCAACAGTGT----TA 2934364 Query 108154 CCAGCA-AGATG-------AAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAA 108205 | ||| | ||| ||| ||| || | | | | ||||||||| |||| || Sbjct 2934363 TCGGCACATATGTGTGGAAAAGTGCCCCACCAATCAGCA--TCCCCATGTTCTCAGGAAA 2934306 Query 108206 TGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCA 108265 |||||| ||||||| | | |||| ||||| ||||||| || || || | || Sbjct 2934305 TGCCTACTTTGTGGTCACAAGAGCTTTTGTGGAACATGTGTTGGAGGACAGAGAGGTTCA 2934246 Query 108266 AAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCT 108325 | | | || |||| || ||||| || ||||| || || ||| | ||||||||||| Sbjct 2934245 GAAGTTTCTGGAGTGGGAGAAGGACACATACAGCCCTGATGAGCACTTGTGGGCCACCCT 2934186 Query 108326 TCAGCG--TGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCA 108383 ||| | ||| | || | ||||| || | || | |||||| |||| ||| Sbjct 2934185 GCAGAGGATGCCCTCTG--TTCCTGGGTCAATGCCCCCAAATGGGAAGTATGACATGTCA 2934128 Query 108384 GACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATG 108443 |||||| || | || || || |||||| ||| | |||||| | | | | Sbjct 2934127 GACATGCTAGCTTTGGCTCGGGCAGTGAAGTGGTCGTATTCAGCAGGAGATATGAATAAG 2934068 Query 108444 GGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCC 108503 || || || ||| || ||| |||| | || | || | || || | || || || Sbjct 2934067 GGAGCCCCATATTACCCATGCACTGGTGTTTATAGAAGATCTATTTGTGTGTATGGAGCG 2934008 Query 108504 GGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGG 108563 || ||||| ||| | || | | || ||||| || ||||| |||||||| || | Sbjct 2934007 GGTGACCTCCCATGGCTCCTGAAACAACACCACCTGTTTGCAAATAAGTTTGATCCAGAG 2933948 Query 108564 GTGGATGAT 108572 || |||||| Sbjct 2933947 GTTGATGAT 2933939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348238086609864