Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq117 405 6e-108 seq64 100 4e-16 seq48 82.4 1e-10 >seq117 Length=2128962 Score = 405 bits (448), Expect = 6e-108 Identities = 1267/1952 (65%), Gaps = 39/1952 (2%) Strand=Plus/Plus Query 62325 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTA 62384 ||||| ||||| |||||||| | ||||| || | || | || || || ||||| Sbjct 876794 TTCTTCATCTCCTCATTCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTG 876853 Query 62385 ACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62444 || | || || || || || | || | || ||||| || || || || || | || Sbjct 876854 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 876913 Query 62445 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62504 | ||||| || || |||| || || || || || || || ||||| || | || || Sbjct 876914 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGCAGC 876973 Query 62505 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGA 62564 | || || || | || | | | ||| || || || || | | ||| | ||| || Sbjct 876974 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 877033 Query 62565 TCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTA 62617 |||| || | | ||| || || ||||| || ||||| | Sbjct 877034 TCCGTTGGCGTCTTCTCCCACATGTCG-------TACTGGAGAATGCCCTTACTCACCGG 877086 Query 62618 CGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAA 62677 ||| ||| |||| || ||||| | || || | || | | || ||||| || || Sbjct 877087 CGAGCCTTCATACGTCTCATAGGTGCCGAGCTCGGCGGCCAACTCGCAGCTCGCTTCCAA 877146 Query 62678 TGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATC 62737 || | ||||| || || |||||||||| | || || ||| || || ||||| || Sbjct 877147 AGCGGCATAATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTC 877206 Query 62738 AAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62797 ||| |||||| | || || || || || || ||||| || || || || || || || Sbjct 877207 AAAGGGATAACGCATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGG 877266 Query 62798 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 62857 || || | | | || || | |||||| | || || || || || || |||| Sbjct 877267 CCTGTGCCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAAC 877326 Query 62858 TTTATTGAGATTTCTGACAATTACTTTGACCAC--ATCCTTCAGTTTGAGAAAATCAAAT 62915 || || | || ||||||||||||||| ||| || | || ||| ||| ||| | Sbjct 877327 CTTGTTCAAGTTCCTGACAATTACTTTGGTCACGGATGC--CAATTTTTTAAAGTCATAA 877384 Query 62916 ---CGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACC 62972 ||| || | || ||||||| | || ||||| |||||||| || || || ||| Sbjct 877385 GTCCGCTCAGGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACC 877444 Query 62973 TCATTAGCATCCGCATATTGTATT-----ATCTCAGTGCAAAGATTACTACACTTGATAG 63027 || | | | | || |||| | || || ||||| || || || |||||||| | Sbjct 877445 TCGTC--CTTGC---TAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGG 877499 Query 63028 TTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAG 63087 | || | ||| || || || ||||| |||| || ||||| || || | ||| | || | Sbjct 877500 TGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCG 877559 Query 63088 TACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATA 63146 | || ||||| |||| || || || || || | ||| | | || ||||||| | | | Sbjct 877560 TCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCAAAGCTGCT-GAGCCTTCACCACA 877618 Query 63147 GATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAA 63206 || |||| || | || ||| || || | | ||| ||||| || ||||| Sbjct 877619 CGCTTCACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAG 877678 Query 63207 ACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC 63266 | |||| | || || || |||||||||||| ||||| ||| ||| | || | Sbjct 877679 CACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCC 877738 Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 || || ||||| ||||| ||||| ||||| || || || || || || | || || Sbjct 877739 ACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGC 877798 Query 63327 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386 ||||| ||||| || ||||| || || || ||||| | | | ||| | ||||| || Sbjct 877799 TCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGC 877858 Query 63387 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 63446 |||| ||| ||||| | | ||||| | |||||| || |||||||| | || | || Sbjct 877859 TCCAGGTACATGGCGAAGGCGCCAGGTCTTTTGTTCCCCCCCTGATCAACATAACGCGCT 877918 Query 63447 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAG 63506 ||||| || ||||| ||||||||||| | | ||||| || || ||||| |||| | Sbjct 877919 GTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGGCG 877978 Query 63507 ATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 63566 || |||| || ||| | ||| || | || | || || || || || ||| Sbjct 877979 ATGTAGCTCCCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTG 878038 Query 63567 GAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATG 63626 ||||| | ||||| | || | |||||| ||||| || || ||||| ||||| ||||| Sbjct 878039 GAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATG 878098 Query 63627 TTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGA 63686 || || || ||||| |||| || | | | ||||| ||||| || | ||| || Sbjct 878099 GCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGG 878158 Query 63687 GAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA 63746 || ||||| || ||||| || || || || || ||||| ||||| || ||| || ||| Sbjct 878159 GAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATA 878218 Query 63747 TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATT 63806 ||| || ||||| || || || | ||| | ||||||||| || | ||| | | | Sbjct 878219 TCCGTCCCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACT 878278 Query 63807 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63866 ||| || || || | || |||||| |||| ||| || || ||||| ||||||| Sbjct 878279 TTGCCATTGATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAG 878338 Query 63867 GAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATA 63926 || || |||| || || || || |||| || || || || | | ||| || Sbjct 878339 GAGAAATCTCTGTCATAGATTATGGCCGAGTTAAGGCGGTCTTTGTTTGCAAGAACAATG 878398 Query 63927 TCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTA--GGATTAACATAGT 63984 || | || | ||||| || |||| | || | | || | || || | |||| Sbjct 878399 TCGAGTGTGTCTTTCGAAATCAT-GGAGGA-GTGGCGTTTGTTCAGGGGGTTGATGTAGT 878456 Query 63985 TGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATA 64044 || | | |||||||| || || || || | || || || || ||||| | || || | Sbjct 878457 TGTACAGGTCCTCCATGACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAAGTTAGAGA 878516 Query 64045 TGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTA 64104 ||| || | || || || ||||| || || || | | || || |||||| || | Sbjct 878517 CGGCGATGCGTGCTGCGAGGATGGCGTAGTCGGGGTACTTGGTTGTGAGAGTGGCAGCGA 878576 Query 64105 TTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAA 64164 | || || ||||| ||||| | || || || || || || | || | || || || | Sbjct 878577 TCTCCGCCGCCAGCGTGTCGAGCTCCACAGTGGTGACGCCGCTGTACAAACCCTGGATGA 878636 Query 64165 CCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTC 64224 ||||||| | || | || || | | ||| |||| | || ||||| || ||| Sbjct 878637 CCTTCATCGTGATCTGGGCTGGGTCCACAAACTCCATGTTGAGTCCGTAGCA-AAGCTTC 878695 Query 64225 T-AATACGAGACGTGATTTTATCAAACATGAC 64255 | || ||||| |||||||| || |||||||| Sbjct 878696 TGGATGCGAGATGTGATTTTGTCGAACATGAC 878727 >seq64 Length=3290765 Score = 100 bits (110), Expect = 4e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 62997 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63056 ||||| ||||| ||||| || | ||||| || || | ||||| |||||||||||| || Sbjct 2550731 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTTTGCTGATTACTCTTTCTG 2550672 Query 63057 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63116 || || |||||||| |||| ||| |||| ||||||||||| |||| || || || || Sbjct 2550671 TTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGCGACTCAATGATG 2550612 Query 63117 GCTTTCCA 63124 || | ||| Sbjct 2550611 GCGTACCA 2550604 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || || || || | |||||||||||||| || ||||| || || || || | ||| Sbjct 2549585 GTGCCAGCGTTGAACAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCTGACAGCAAGTTG 2549526 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || |||||||| |||| || || || | || |||||| || |||| || | ||||| | Sbjct 2549525 TAGGTCTCAATGGCTGCATCAATGTCACCTTTATGAATCCCGACTGACACTCTCATTAGC 2549466 Query 63783 ATGTGCTGAGGTC 63795 |||||||| |||| Sbjct 2549465 ATGTGCTGGGGTC 2549453 >seq48 Length=3648740 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 || || ||||||| || |||||||| || || || ||||| || ||||| ||||| || Sbjct 3236161 TACGTGTCGATCAGCAGGCTATACATCTCTGAGTGGATGTTCTCCATGGCGATCTGGAAA 3236220 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 ||||||||||| | ||||| || | ||||||||| Sbjct 3236221 CCGTAGAAACACCGGGCCTCCGTTACCTGCACTTC 3236255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629760632998080