Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq117 145 7e-30 seq48 84.2 2e-11 >seq117 Length=2128962 Score = 145 bits (160), Expect = 7e-30 Identities = 929/1478 (63%), Gaps = 15/1478 (1%) Strand=Plus/Plus Query 37075 TTCTTTATGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTT 37134 ||||| || || | |||||||| || | | || ||| | | ||||| || || Sbjct 876794 TTCTTCATCTCCTCATTCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTG 876853 Query 37135 ACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCA 37194 || | |||||| || || || | || | | || || || ||||| || || | || Sbjct 876854 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 876913 Query 37195 ATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGA 37254 |||||||| || || | | || || | || || || || |||||||| | | || Sbjct 876914 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGCAGC 876973 Query 37255 AGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAA 37314 ||||| || |||| |||||| | || ||| || || ||||| ||||| | Sbjct 876974 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 877033 Query 37315 TCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCG 37374 || ||||| |||| |||||| || || || ||||| || |||||| | || || | Sbjct 877034 TCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGCCT 877093 Query 37375 TTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCA 37434 | ||| |||||||| | ||| || | ||||| || | ||| | |||||| Sbjct 877094 TCATACGTCTCATAGGTGCCGAGCTCGGCGGCCAACTCGCAGCTCGCTTCCAAAGCGGCA 877153 Query 37435 TAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCA 37494 ||||| || || || || || || || || | | || || || ||| || || | | Sbjct 877154 TAATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAAAGGGA 877213 Query 37495 TAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGT 37554 || | || | || || |||||||||| ||||| || ||||| ||||| || || || Sbjct 877214 TAACGCATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGTGC 877273 Query 37555 TTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTT 37614 | | || || || | |||| ||| || || || ||||| || || | || || Sbjct 877274 CGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGTTC 877333 Query 37615 AGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CATAAATACG-TTA 37671 | || | || | || ||| || | | ||| || | || ||||| | || | | Sbjct 877334 AAGTTCCTGACAATTACTTTGGTCACGGATGCCAATTTTTTAAAGTCATAAGTCCGCTCA 877393 Query 37672 TTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCG 37731 | || | | | | | | ||| | ||||| || || || || || || | | Sbjct 877394 GGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTCCTTG 877453 Query 37732 TTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTT 37791 || | | | | || || || ||||| || || | | || || |||| ||| Sbjct 877454 CTAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGC 877513 Query 37792 TGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATT 37851 || ||| || | || || | |||||| || | || |||||||| || |||| | Sbjct 877514 TGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTC 877573 Query 37852 TGAGCCTCGATAATAGATTTCCATAAACTTCT-TGCTTTAACGA-TCGCTTTAAtttttt 37909 || | |||||| || | | ||| || || || || || || | ||| || | | Sbjct 877574 TGCGACTCGATGATTGCATACCA-AAGCTGCTGAGCCTTCACCACACGC-TTCACCCTCC 877631 Query 37910 tCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCAT--AA 37967 || | || ||| | || | || | ||| || | |||||| || | ||| | Sbjct 877632 CCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCA-GCA-CTCATCCAG 877689 Query 37968 TCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCAT 38027 || || || ||| |||||||| || ||||| ||||| | || || || || | ||| Sbjct 877690 CCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCAT 877749 Query 38028 AAATAAATCAGGTACCCATAATGCAGTA-AATAAATCTTTGGTTCTATATTCTTCGTTCC 38086 || | ||||| | ||| | || ||| || | || ||| || | || || || | Sbjct 877750 GAAGAGGTCAGGGATCCACAGGGC-GTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTC 877808 Query 38087 CTACATTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAA 38145 | ||| ||||| |||| || || || || | ||| |||||| || || | || Sbjct 877809 CCGTGTTC-TTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTAC 877867 Query 38146 ATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTA 38205 || | | || || |||||||| | || ||||||| || ||| | ||||||| || Sbjct 877868 ATGGCGAAGGCGCCAGGTCTTTTGTTCCCCCCCTGATCAACATAACGCGCTGTGTTGTTG 877927 Query 38206 TATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTA 38265 || | || ||||| || || | || || || |||||| | |||| || || | Sbjct 877928 TAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGGCGATGTAGCTC 877987 Query 38266 CCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAA 38325 ||| | | || || || | | || || || || || || ||| || || | Sbjct 877988 CCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGATGAGG 878047 Query 38326 GCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATA 38385 ||||| || || | ||| || | || || || || ||||||||||| || | || | Sbjct 878048 GCGCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGG 878107 Query 38386 AAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGT 38445 || || || |||| || ||| ||||| || || || | || || || || || Sbjct 878108 AAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGG 878167 Query 38446 ATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCG 38505 ||||||| || || |||| || || || || || || | || ||||| ||| Sbjct 878168 GTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCGTCCCG 878227 Query 38506 TGAATACCTAGAGATACCCTCATTAGCATATGTTGTGG 38543 || || || | || |||||||| ||||| || || || Sbjct 878228 TGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGG 878265 >seq48 Length=3648740 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || || || || || || || | |||||||||| |||| || || Sbjct 3225500 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTC 3225441 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || || || || ||||| || ||||| || ||||||||||| ||||| || Sbjct 3225440 AGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAAAGGCC 3225381 Query 11774 ACTACTCTTTCTCC 11787 || || | ||||| Sbjct 3225380 ACCACGCGCTCTCC 3225367 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || || || || || || || | |||||||||| |||| || || Sbjct 3235730 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTC 3235789 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || || || || ||||| || ||||| || ||||||||||| ||||| || Sbjct 3235790 AGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAAAGGCC 3235849 Query 11774 ACTACTCTTTCTCC 11787 || || | ||||| Sbjct 3235850 ACCACGCGCTCTCC 3235863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468482421931840