Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq117 444 8e-120 seq48 105 1e-17 seq64 96.9 5e-15 >seq117 Length=2128962 Score = 444 bits (492), Expect = 8e-120 Identities = 1278/1947 (66%), Gaps = 29/1947 (1%) Strand=Plus/Plus Query 78997 TTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 79056 ||||| ||||| |||||||| | ||||| || | || | || || || || || Sbjct 876794 TTCTTCATCTCCTCATTCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTG 876853 Query 79057 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCC 79116 || | ||||| || || || | || | || ||||| || || || || || | || Sbjct 876854 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 876913 Query 79117 ACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAAT 79176 | || || || || |||| || || || || || ||||| ||||| || | || || Sbjct 876914 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGCAGC 876973 Query 79177 AAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAG-AGATTCCCAATCCCAAAG 79235 | || || || | || | | ||| || || || || || |||| | ||||| || Sbjct 876974 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCC-AGTCCCACAG 877032 Query 79236 ATCAGACGG-GACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATC 79294 || | || | | | | ||| | || || || ||||| || ||||| | || | Sbjct 877033 GTCCGTTGGCGTCTTC-TCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGC 877091 Query 79295 CTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTC 79354 || || || ||||| | || || |||| || || || ||||| || || || Sbjct 877092 CTTCATACGTCTCATAGGTGCCGAGCTCGGCGGCCAACTCGCAGCTCGCTTCCAAAGCGG 877151 Query 79355 CGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATG 79414 | ||||| || || || || |||| | ||||| ||| || || |||| ||||| | Sbjct 877152 CATAATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAAAGG 877211 Query 79415 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 79474 ||||| | || || || || || || ||||| || || || || || || || || | Sbjct 877212 GATAACGCATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGT 877271 Query 79475 GTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 79534 | | | | || || | |||||| | || || || || || || |||| || | Sbjct 877272 GCCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGT 877331 Query 79535 TGAGATTCCTGACTATTACTTTGACCAC--ATCCTTTAGTTTGAGAAAATCAAAT---CG 79589 | | |||||||| ||||||||| ||| || | | ||| ||| ||| | || Sbjct 877332 TCAAGTTCCTGACAATTACTTTGGTCACGGATGCC--AATTTTTTAAAGTCATAAGTCCG 877389 Query 79590 TCCATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATT 79649 || | || ||||||| | |||||||| |||||||| ||||| || ||||| | Sbjct 877390 CTCAGGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTC 877449 Query 79650 AGCATCCGCATATTGTATT-----ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCT 79704 | | | || |||| | ||||| ||||||||||| || ||||| ||||| || Sbjct 877450 --CTTGC---TAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCC 877504 Query 79705 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCA 79764 | ||| || || || ||||| |||| || ||||| || || | ||| |||| || || Sbjct 877505 AGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCG 877564 Query 79765 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGACTT 79823 ||||| |||| || || || || || | ||| | | || ||||||| | | | ||| Sbjct 877565 GTTTCTGTCTGCGACTCGATGATTGCATACCAAAGCTGCT-GAGCCTTCACCACACGCTT 877623 Query 79824 GTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATC 79883 ||| || | || ||| || || | | ||| ||||| || ||||| || Sbjct 877624 CACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTC 877683 Query 79884 GTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCG 79943 || | || || || ||| | |||||||||| ||||| ||| | | | || || || Sbjct 877684 ATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCG 877743 Query 79944 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 80003 ||||| ||||| ||||| ||||| || || || || || |||| || |||||||| Sbjct 877744 CTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTC 877803 Query 80004 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 80063 ||||| || ||||| || || || ||||| | | | ||| | ||||| || |||| Sbjct 877804 CTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAG 877863 Query 80064 GTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 80123 ||| ||||| | | || |||| |||||| || |||||||| | || | || ||||| Sbjct 877864 GTACATGGCGAAGGCGCCAGGTCTTTTGTTCCCCCCCTGATCAACATAACGCGCTGTGTT 877923 Query 80124 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATA 80183 || ||||| ||||||||||| | | || ||||| || ||||| |||| ||| || Sbjct 877924 GTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCGGCGATGTA 877983 Query 80184 GCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 80243 ||| || ||| | ||| || | || | || || || || || ||| ||||| Sbjct 877984 GCTCCCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGAT 878043 Query 80244 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAG 80303 | ||||| | || | ||| || ||||| ||||| ||||| ||||| ||||| || Sbjct 878044 GAGGGCGCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAG 878103 Query 80304 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 80363 || || ||||| |||| || | | | ||||| ||||| || | ||| || || || Sbjct 878104 CAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGC 878163 Query 80364 GTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCA 80423 ||| || ||||| || || ||||| || ||||| ||||| || ||| ||| |||||| Sbjct 878164 GTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCGT 878223 Query 80424 TTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 80483 || ||||| || || || | ||| | ||||||||| || | ||| | | ||| Sbjct 878224 CCCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCC 878283 Query 80484 ATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 80543 ||| || || | || ||| || |||| ||| || || ||||| ||||||| || || Sbjct 878284 ATTGATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAA 878343 Query 80544 GTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCAT 80603 |||| || || || || ||||||| || || || | | ||| | || | Sbjct 878344 ATCTCTGTCATAGATTATGGCCGAGTTAAGGCGGTCTTTGTTTGCAAGAACAATGTCGAG 878403 Query 80604 GGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTA--GGATTAACATAGTTGAAT 80661 ||| | ||||| || |||| | || | | || | || || | |||||| | Sbjct 878404 TGTGTCTTTCGAAATCAT-GGAGGA-GTGGCGTTTGTTCAGGGGGTTGATGTAGTTGTAC 878461 Query 80662 AAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCT 80721 | |||||||| || || || || | || || || || ||||| | || || ||||| Sbjct 878462 AGGTCCTCCATGACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAAGTTAGAGACGGCG 878521 Query 80722 ATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCG 80781 || | || || | ||||| || || || | | || || |||||| || || || Sbjct 878522 ATGCGTGCTGCGAGGATGGCGTAGTCGGGGTACTTGGTTGTGAGAGTGGCAGCGATCTCC 878581 Query 80782 GCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTC 80841 || ||||| ||||| | || || || || || || | || | || ||||| |||||| Sbjct 878582 GCCGCCAGCGTGTCGAGCTCCACAGTGGTGACGCCGCTGTACAAACCCTGGATGACCTTC 878641 Query 80842 ATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT-AAT 80900 || | || | || || | | || |||| | || || || || |||| || Sbjct 878642 ATCGTGATCTGGGCTGGGTCCACAAACTCCATGTTGAGTCCGTAGCA-AAGCTTCTGGAT 878700 Query 80901 ACGAGACGTGATTTTATCAAACATGAC 80927 ||||| |||||||| || |||||||| Sbjct 878701 GCGAGATGTGATTTTGTCGAACATGAC 878727 >seq48 Length=3648740 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||||| || || || |||||||| ||||| | ||| | Sbjct 3225502 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 3225443 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| || || || || || |||||||| || || || |||||||||| Sbjct 3225442 TCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAAAGG 3225383 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 3225382 CCACCACGCGCTCTCC 3225367 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||||| || || || |||||||| ||||| | ||| | Sbjct 3235728 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 3235787 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| || || || || || |||||||| || || || |||||||||| Sbjct 3235788 TCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAAAGG 3235847 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 3235848 CCACCACGCGCTCTCC 3235863 >seq64 Length=3290765 Score = 96.9 bits (106), Expect = 5e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 79291 GATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAAT 79350 || || | ||| ||||||||||| || || | | || || |||||||| ||||| | Sbjct 2551305 GAGCCGGGGTAGGTTTCATAAGGGCCAAGCTCTGCTGCCAACTCACAACTGGCCTCCAGG 2551246 Query 79351 GCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCA 79410 || |||| || ||||| || || |||| | ||||| || || ||| |||| ||| Sbjct 2551245 GCAGCGTAGTACATGGTCTCAAAGATCTGAATGTTGAGCAACTGGGCCTCTGGGCTTTCA 2551186 Query 79411 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 79470 || ||||| | ||| ||||| || || || | || || |||||||| || || || Sbjct 2551185 AACGGATAGCGCATGAGGATAAAAGCATCAGCCAGACCCTGCACACCAATTCCAATTGGC 2551126 Query 79471 CTATGTCTCTTATTAGAAATTTCAGC 79496 || || | ||| ||||| ||||||| Sbjct 2551125 CTGTGACGCTTGTTAGACCTTTCAGC 2551100 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || || || || | |||||||||||||| || ||||| || || ||||| | ||| Sbjct 2549585 GTGCCAGCGTTGAACAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCTGACAGCAAGTTG 2549526 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || |||||||| |||| || || || | || |||||| || || | || | ||||| | Sbjct 2549525 TAGGTCTCAATGGCTGCATCAATGTCACCTTTATGAATCCCGACTGACACTCTCATTAGC 2549466 Query 80455 ATGTGCTGAGGTC 80467 |||||||| |||| Sbjct 2549465 ATGTGCTGGGGTC 2549453 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 79669 ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 79728 || || ||||| || || || | || ||||| || | ||||| |||||||||||| || Sbjct 2550731 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTTTGCTGATTACTCTTTCTG 2550672 Query 79729 TTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 79788 || || |||||||| |||| ||| | || ||||||||||| |||| || || || || Sbjct 2550671 TTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGCGACTCAATGATG 2550612 Query 79789 GCTTTCCA 79796 || | ||| Sbjct 2550611 GCGTACCA 2550604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718203832587040