Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq117 403 2e-107 seq64 91.5 2e-13 seq48 91.5 2e-13 >seq117 Length=2128962 Score = 403 bits (446), Expect = 2e-107 Identities = 1068/1615 (66%), Gaps = 21/1615 (1%) Strand=Plus/Plus Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467 |||| | || || ||||| || || || ||||||| || || || || |||| | | Sbjct 877122 CGGCCAACTCGCAGCTCGCTTCCAAAGCGGCATAATACATAGTCTCAAAGATCTGGATGT 877181 Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527 |||| ||| || || ||||| ||||| |||||| | || || || || || || | Sbjct 877182 TGAGCAGTTGAGCCTCGGGGCTTTCAAAGGGATAACGCATAAGGATGAAGGCATCAGCCA 877241 Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587 |||| || || || || || || || ||||| | | | || || | |||||| | Sbjct 877242 ATCCCTGGACCCCGATTCCTATCGGCCTGTGCCGCATGTTCGACCTCCTGGCTTCTTCCA 877301 Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCAC-- 71645 || || || || || || |||| || || | || ||||| ||||||||| ||| Sbjct 877302 CCGGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGG 877361 Query 71646 ATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAAC 71702 || | | ||| ||| ||| | ||| || | || ||| ||| | || || Sbjct 877362 ATGCC--AATTTTTTAAAGTCATAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGAC 877419 Query 71703 AGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCGGCATATTGTATAATTTCAGTG 71760 ||| |||||||| ||||| || ||||| | | || | || | | ||||| ||| Sbjct 877420 AGAGGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTG--TACTCGACGATTTCCGTG 877477 Query 71761 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 71820 || || || || ||||||||||| || | ||| || || || ||||| |||| || ||| Sbjct 877478 CAGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCA 877537 Query 71821 TCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 71880 || || || | || |||| || || ||||| |||| || || || || || | ||| Sbjct 877538 TCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCAA 877597 Query 71881 A-CGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAA 71939 | | || ||||||| | | | ||| ||| || | || ||| || || | Sbjct 877598 AGCTGCT-GAGCCTTCACCACACGCTTCACCCTCCCCTCCTTCTCATATCTGGTGTAGAG 877656 Query 71940 TCGTTCGAACTCGTCTCCCCAAGCATTG-TCTAATCCAGGACATTCATTCGGACACATCA 71998 | ||| ||||| || ||||| ||| | || | || || || || ||||||||||| Sbjct 877657 TTCTTCAAACTCCTCCCCCCA-GCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCA 877715 Query 71999 ATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 72058 ||||| ||| | | | | || || ||||| ||||| ||||| ||||| || || Sbjct 877716 GGGACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGT 877775 Query 72059 TAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 72118 || || || |||| || |||||||| ||||| || ||||| || || || ||||| Sbjct 877776 AGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGT 877835 Query 72119 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTC 72178 | | | ||| | ||||| || |||| ||| ||||| | | || || | |||||| | Sbjct 877836 CAAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCAGGTCTTTTGTTCC 877895 Query 72179 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 72238 | |||||||| | || | || ||||| || ||||| ||||||||||| | | || | Sbjct 877896 CCCCCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGT 877955 Query 72239 TGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATA 72298 |||| || ||||| |||| ||| ||||| || ||| | ||| ||| | || | Sbjct 877956 TGGAACAGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGATCTAATGCAGCTGACTGCCA 878015 Query 72299 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 72358 || || || || || ||| ||||| | ||||| | || | ||| || ||||| | Sbjct 878016 CGCCAATCCCTCCAGCTGATTTGGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGATCC 878075 Query 72359 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 72418 |||| || || |||||| ||||| || || || ||||| |||| || | | | | Sbjct 878076 CCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGG 878135 Query 72419 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 72478 |||| ||||| || | ||| || || ||||| || ||||| || || ||||| || |||| Sbjct 878136 TTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGT 878195 Query 72479 ACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACA 72538 | ||||| || ||| ||| |||||| || ||||| || || || | ||| | || Sbjct 878196 AGGTCTCGATGACTGCTTCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGAGCA 878255 Query 72539 TATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAG 72598 | ||||| || | ||| | | ||| ||| || || | || |||||| |||| || Sbjct 878256 TGTGCTGCGGACGCTCAGCTACTTTGCCATTGATCTTTAGCAGGTAGGAGCGCTCCAGAG 878315 Query 72599 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTT 72658 | || || ||||| ||||||| || || |||| || || || || |||| || || Sbjct 878316 TCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCATAGATTATGGCCGAGTTAAGGC 878375 Query 72659 TATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCC 72718 || || | | ||| || || | ||| | ||||| || |||| | || | Sbjct 878376 GGTCTTTGTTTGCAAGAACAATGTCGAGTGTGTCTTTCGAAATCAT-GGAGGA-GTGGCG 878433 Query 72719 CATTTTTA--GGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttt 72776 | || | || || | |||||| | | |||||||| || || || || | || || Sbjct 878434 TTTGTTCAGGGGGTTGATGTAGTTGTACAGGTCCTCCATGACGTCGCTGAACACCTTCTT 878493 Query 72777 tGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 || || ||||| | || || ||||| || | || || || ||||| || || || | Sbjct 878494 CGTCTCTTTGTGCAAGTTAGAGACGGCGATGCGTGCTGCGAGGATGGCGTAGTCGGGGTA 878553 Query 72837 TTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTAC 72896 | || || |||||| || || || || ||||| ||||| | || || || || || Sbjct 878554 CTTGGTTGTGAGAGTGGCAGCGATCTCCGCCGCCAGCGTGTCGAGCTCCACAGTGGTGAC 878613 Query 72897 TCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGT 72956 || | || | || ||||| |||||||| | || | || || | | || | Sbjct 878614 GCCGCTGTACAAACCCTGGATGACCTTCATCGTGATCTGGGCTGGGTCCACAAACTCCAT 878673 Query 72957 GTTTAAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATAAC 73010 ||| | || || || || |||| || ||||| |||||||| || ||||| || Sbjct 878674 GTTGAGTCCGTAGCA-AAGCTTCTGGATGCGAGATGTGATTTTGTCGAACATGAC 878727 >seq64 Length=3290765 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 71752 ATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 71811 || || ||||| ||||| || | |||||||| || | ||||| |||||||||||| || Sbjct 2550731 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTTTGCTGATTACTCTTTCTG 2550672 Query 71812 TTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 71871 || || |||||||| |||| || | || ||||||||||| |||| || || || || Sbjct 2550671 TTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGCGACTCAATGATG 2550612 Query 71872 GCTTTCCA 71879 || | ||| Sbjct 2550611 GCGTACCA 2550604 >seq48 Length=3648740 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 || || ||||||| || |||||||| ||||| || ||||| || ||||| ||||| || Sbjct 3236161 TACGTGTCGATCAGCAGGCTATACATCTCTGAGTGGATGTTCTCCATGGCGATCTGGAAA 3236220 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 ||||||||||| | |||||| || ||||| ||||| Sbjct 3236221 CCGTAGAAACACCGGGCCTCCGTTACCTGCACTTC 3236255 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 || || ||||||| || || ||||| ||||| || ||||| || ||||| ||||| || Sbjct 3225069 TACGTGTCGATCAGCAGGCTGTACATCTCTGAGTGGATGTTCTCCATGGCGATCTGGAAA 3225010 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 ||||||||||| | |||||| || ||||| ||||| Sbjct 3225009 CCGTAGAAACACCGGGCCTCCGTTACCTGCACTTC 3224975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671078495459360