Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq249 125 2e-23 seq1488 120 7e-22 seq80 116 9e-21 seq48 104 5e-17 >seq249 Length=855460 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 104381 TTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGT 104440 || |||||||| || || || ||||| || || || |||||||| || |||||||| Sbjct 398376 TTGTAGTCAGAGAGGGTGTGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGC 398317 Query 104441 TGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCG 104500 || ||||| || || ||||| |||||||| || || || || | || || | ||| || Sbjct 398316 TGGTCAGGGGGGATGCCTTCCTTATCCTGGATTTTGGCCTTCAAGTTCTCAATGGTGTCA 398257 Query 104501 CTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| || || || ||||||||||| || || || ||||| |||||||| Sbjct 398256 CTGGGCTCAACCTCCAGAGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 398198 >seq1488 Length=10769 Score = 120 bits (132), Expect = 7e-22 Identities = 229/335 (68%), Gaps = 2/335 (1%) Strand=Plus/Minus Query 165102 AGGATGAATGGAATACTTGGAATAAAATACACGATCCTGTTTTACATATAGAGCTAAGAA 165161 ||||||||||| | ||||| | | | || ||||| |||| || |||||||| Sbjct 8939 AGGATGAATGGGAGCTGTGGAAACAGAGATCTGACCCTGTGCTACACATTGAGCTAAGGC 8880 Query 165162 GATGGGCAGATATGATGTTGATAGCACC-CTTAACAGCAAACAGTTTAGCGAAGATAGCT 165220 | |||| |||| | | | || || || ||| | || |||||| | | ||||| ||| Sbjct 8879 GTTGGGAAGATCTACTTGTCATTGCCCCTCTTGAT-GCCAACAGTCTTGGAAAGATTGCT 8821 Query 165221 AACGGTATCTGTAATAACTTGTTAACGTGTATAGTTAGAGCGTGGAATATTAATAAACCT 165280 | ||||| ||| |||| || | |||||| | || ||||| ||| ||| | | ||| Sbjct 8820 AGTGGTATTTGTGATAATCTGCTGACGTGTGTGGTAAGAGCCTGGGATACCAGTCGTCCT 8761 Query 165281 TTACTTTTCTGTCCAGCTATGAATACACTTATGTGGGAACATCCTATTACTGAGCAGCAT 165340 | || ||||| || || ||||| ||| ||||||| ||||||||||| | ||||| Sbjct 8760 CTTCTCTTCTGCCCTGCAATGAACACAGCTATGTGGCTGCATCCTATTACAGCCCAGCAG 8701 Query 165341 ATAGAAACTCTTAAGCATATGGGGTACATAGAAGTTGAGTGTATTGAGAAAAAGCTAGCT 165400 || | || || | | || || | ||| | || ||| |||||||||| Sbjct 8700 GTATCCAGACTGAAAGAGTTTGGATATGTGGAAATCCCCTGCGTTGCCAAAAAGCTAGTG 8641 Query 165401 TGTGGTGATATTGGAAAAGGTGCCATGGCAGAAGT 165435 ||||| ||| || |||||||||||||||||||| Sbjct 8640 TGTGGAGATGAAGGTAAAGGTGCCATGGCAGAAGT 8606 >seq80 Length=2822622 Score = 116 bits (128), Expect = 9e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || || ||||| || |||||||| || ||||| || || || || |||||||| Sbjct 742253 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGG 742312 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || || || ||||| || | ||| || || || || ||||| || || || |||||| Sbjct 742313 ATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGAGTGATGGTCTTA 742372 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || ||||| ||||| |||||||| || Sbjct 742373 CCAGTTAGGGTTTTCACAAAGATCTGCATGTT 742404 >seq48 Length=3648740 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || ||||||||||| || || || ||||| ||||| || || ||||| ||||| ||| Sbjct 3225379 GTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCCGCCATCTTCTGG 3225438 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| |||||||| ||||| || | || ||||| ||||| | || ||||| ||| Sbjct 3225439 CTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGAC 3225498 Query 269258 GA 269259 || Sbjct 3225499 GA 3225500 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || ||||||||||| || || || ||||| ||||| || || ||||| ||||| ||| Sbjct 3235851 GTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCCGCCATCTTCTGG 3235792 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| |||||||| ||||| || | || ||||| ||||| | || ||||| ||| Sbjct 3235791 CTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGAC 3235732 Query 269258 GA 269259 || Sbjct 3235731 GA 3235730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151291652415088