Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pundamilia_20nyererei_20[refseq_20GCF_5F000239375.1_202011-12-22] 7,236 sequences; 830,133,247 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq50 147 3e-30 seq127 118 2e-21 seq2 113 6e-20 >seq50 Length=3533640 Score = 147 bits (162), Expect = 3e-30 Identities = 132/166 (80%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 9605 TTGTTTCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTG 9664 |||| | ||||| | |||||| || | |||||| || ||| ||||||| ||| | || Sbjct 1494037 TTGTCTTACCGATTAGGATGAGCCGTGCGGTCTGGAAGAGTCTTTCGTCATCCCAGTATG 1493978 Query 9665 GATGTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGT 9724 | || | |||||| ||||||||||| | ||||||||| | ||||||||| || |||| Sbjct 1493977 GGTGGACCTCTTTCAGCACATCGCACACACGGTTGTGTTCGCGGAGCCAGATGGTGGCGT 1493918 Query 9725 ACATCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGC 9770 ||||||| |||||||| ||||||||||| ||||| || |||||||| Sbjct 1493917 ACATCATCAGACCAGGGACCAGGCCAAATGCCTCGTGGCCGACAGC 1493872 Score = 132 bits (146), Expect = 7e-26 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 || |||||||||||||| |||||||| |||||||||||||| || | || ||||| Sbjct 1495701 CCTCCGAAGGTGCTGGGCTTCCAGTACTCCGGGGAGCAGATGGGATTTCCGATTAGGCCC 1495642 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 |||||||| || |||||||||| ||| | || | || || |||||| |||| | | | Sbjct 1495641 TTGAGGGAGAAAGGAGCCCCCATCTCCACCATTGTTTCCCCAAAGATGCCGTTATGTCTG 1495582 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCC 8944 ||||| ||||||| | || | ||| | ||||||||| |||| || ||||| || || Sbjct 1495581 GGCTTCTCCACCAGCAGGCCCGGGTAGAGCTCCACAGCATCGACGTGCCCGTACAGCTCC 1495522 Query 8945 CTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || | || || ||||| || || |||| Sbjct 1495521 TCCAGCACCGCGGCCATTTCTTTCTCCCCTG 1495491 >seq127 Length=1908066 Score = 118 bits (130), Expect = 2e-21 Identities = 175/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 ||||||| |||| |||| ||| || || | | ||| || |||||||||| | Sbjct 1792489 GGACACCATTTGCTGTTGAGACACACCAGTTTTTTCAGAGTGGCTGTCTTGACGATATTA 1792548 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || || ||||| || ||||||||||| |||||||| | || |||||||| ||| Sbjct 1792549 AAGCCGGTTTCTCCTCCAAAGGTGCTGGGCTTCCAGTATTCAGGCGAGCAGATTGGGTTT 1792608 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | |||||||| || ||||| ||||| |||| ||| | |||||||| || || ||| Sbjct 1792609 CCAAGCAGGCCTTTCAGTGAAAAGGGAGCACCCATCTCCACCATGCTCTCTCCAAAAATG 1792668 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 || || |||||| || || | || | || | ||| ||||||| || || ||||| Sbjct 1792669 GCTTTAGGACGGATTTTCTCAAGCATTATGCCTGGGTAAAACTCCAGGGCGTCTATGTCA 1792728 Query 8933 CCGTAAAG 8940 || || || Sbjct 1792729 CCATAGAG 1792736 Score = 109 bits (120), Expect = 8e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || ||||||||||||| | ||||| || || || || ||| ||| |||||| Sbjct 1797256 TCACCAATAATGATGAGTCTGGCTGTCTGGAAAAGCTGCTCATCATCCCAGGTGGGATGT 1797315 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 ||| || || | || || |||||||| ||||||| ||||| || || || ||||| Sbjct 1797316 TCTGCCTTTAGGATGTCACAGACTCTGTTATGTTCCCGCAGCCATATGGTGGCATACATG 1797375 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 | ||||| |||| | |||||| |||| ||||||| ||||||||| | | | | || Sbjct 1797376 GTTAGACCCGGCAGGATGCCAAATACCTCCTGACCGATGGCCAGACGCTTGTCTGCTGGG 1797435 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATC 9824 | | |||||| | ||||||||| |||| || Sbjct 1797436 ATGTTTTCAGGATACACCATGTGCACTGGGACCTC 1797470 >seq2 Length=10686569 Score = 113 bits (124), Expect = 6e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| ||||| | ||| || ||||||||||| |||||||| |||| ||||| || || Sbjct 6168559 CAAAGCCCACCTTTCCTCCAAAGGTGCTGGGCTTCCAGTATTCCGGAGAGCATATAGGGT 6168618 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | ||| ||||||||| ||||| || || || |||| ||| | ||||| ||||| || | Sbjct 6168619 TTCCCAGGAGGCCTTTAAGGGAGAAGGGGGCACCCATCTCCACCATGCTTTCACCAAATA 6168678 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 |||| | || | || |||| ||| || |||| ||| || |||| || || |||| Sbjct 6168679 TGGCCCCCGCTCGTGTTTTCTCCAACAACAAGCCGGGGTAAAATTCCAGTGCGTCAATGT 6168738 Query 8931 CTCCGTAAAG 8940 | |||| || Sbjct 6168739 CATCGTAGAG 6168748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708460713931840